| 1. |
- Lindström, Sara, et al.
(author)
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Systematic replication study of reported genetic associations in prostate cancer : Strong support for genetic variation in the androgen pathway
- 2006
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In: The Prostate. - Karolinska Inst, Dept Med Epidemiol & Biostat, SE-17177 Stockholm, Sweden. Umea Univ, Dept Radiat Sci Oncol, Umea, Sweden. Wake Forest Univ, Sch Med, Ctr Human Genome, Winston Salem, NC USA. Karolinska Inst, Ctr Genome & Bioinformat, Stockholm, Sweden. Univ Leicester, Dept Genet, Leicester, Leics, England. Johns Hopkins Med Inst, Dept Urol, Baltimore, MD USA. Karolinska Inst, CLINTEC, Ctr Oncol, Stockholm, Sweden. : WILEY-LISS. - 0270-4137 .- 1097-0045. ; 66:16, s. 1729-1743
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Research review (peer-reviewed)abstract
- BACKGROUND. Association studies have become a common and popular method to identify genetic variants predisposing to complex diseases. Despite considerable efforts and initial promising findings, the field of prostate cancer genetics is characterized by inconclusive reports and no prostate cancer gene has yet been established. METHODS. We performed a literature review and identified 79 different polymorphisms reported to influence prostate cancer risk. Of these, 46 were selected and tested for association in a large Swedish population-based case-control prostate cancer population. RESULTS. We observed significant (P < 0.05) confirmation for six polymorphisms located in five different genes. Three of them coded for key enzymes in the androgen biosynthesis and response pathway; the CAG repeat in the androgen receptor (AR) gene (P = 0.03), one SNP in the CYP17 gene (P = 0.04), two SNPs in the SRD5A2 gene (P = 0.02 and 0.02, respectively), a deletion of the GSTT1. gene (P = 0.006), and one SNP in the MSR1 gene, IVS5-59C > A, (P = 0.009). CONCLUSIONS. Notwithstanding the difficulties to replicate findings in genetic association studies, our results strongly support the importance of androgen pathway genes in prostate cancer etiology.
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| 2. |
- McKay, James D., et al.
(author)
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Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes
- 2017
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In: Nature Genetics. - : Nature Publishing Group. - 1061-4036 .- 1546-1718. ; 49:7, s. 1126-1132
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Journal article (peer-reviewed)abstract
- Although several lung cancer susceptibility loci have been identified, much of the heritability for lung cancer remains unexplained. Here 14,803 cases and 12,262 controls of European descent were genotyped on the OncoArray and combined with existing data for an aggregated genomewide association study (GWAS) analysis of lung cancer in 29,266 cases and 56,450 controls. We identified 18 susceptibility loci achieving genome-wide significance, including 10 new loci. The new loci highlight the striking heterogeneity in genetic susceptibility across the histological subtypes of lung cancer, with four loci associated with lung cancer overall and six loci associated with lung adenocarcinoma. Gene expression quantitative trait locus (eQTL) analysis in 1,425 normal lung tissue samples highlights RNASET2, SECISBP2L and NRG1 as candidate genes. Other loci include genes such as a cholinergic nicotinic receptor, CHRNA2, and the telomere-related genes OFBC1 and RTEL1. Further exploration of the target genes will continue to provide new insights into the etiology of lung cancer.
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| 3. |
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| 4. |
- Acevedo Gomez, Yasna
(author)
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On Gas Contaminants, and Bipolar Plates in Proton Exchange Membrane Fuel Cells
- 2019
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Doctoral thesis (other academic/artistic)abstract
- The proton exchange membrane (PEM) fuel cell is an electrochemical device that converts chemical energy into electrical energy through two electrocatalytic reactions. The most common catalyst used is platinum on carbon (Pt/C), which has shown the best performance in the fuel cell until now. However, the drawback of this catalyst is that it does not tolerate impurities, and both hydrogen and oxygen may carry small amounts of impurities depending on the production sources. The purpose of this thesis is to understand the effect of two impurities that are less investigated, i.e., ammonia, which may accompany the hydrogen rich reformates from renewable sources, and nitrogen dioxide, which may come from air pollution. The mechanism of contamination and an adequate recovery method for the respective contaminant are studied. Additionally, electroplated bipolar plates with Ni-Mo and Ni-Mo-P coatings were tested as alternatives to stainless steel and carbon materials.The results show that ammonia not only provokes changes in the polymer membrane but also in the oxygen reduction reaction (ORR), hydrogen oxidation reaction (HOR) and catalyst ionomer in both electrodes. The extent of performance recovery after the contamination depends on the concentration used and the exposure time. In contrast, nitrogen dioxide affects the catalyst in the electrode directly; the contamination is related to side reactions that are produced on the catalyst’s surface. However, NO2 is not attached strongly to the catalyst and it is possible to restore the performance by using clean air. The time the recovery process takes depends on the potential applied and the air flow.Finally, the evaluation of electroplated Ni-Mo and Ni-Mo-P on stainless steel by ex situ and in situ studies shows that these coatings reduce the internal contact resistance (ICR) and the corrosion rate of the stainless steel considerably. However, the in situ experiments show that phosphorus addition to the coating does not improve the fuel cell performance; thus, the Ni-Mo alloy is found to be a promising choice for electroplating stainless steel bipolar plates.
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| 5. |
- Bruzzi, M, et al.
(author)
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Radiation-hard semiconductor detectors for SuperLHC
- 2005
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In: Nuclear Instruments & Methods in Physics Research. Section A: Accelerators, Spectrometers, Detectors, and Associated Equipment. - : Elsevier BV. - 0167-5087 .- 0168-9002. ; 541:1-2, s. 189-201
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Journal article (peer-reviewed)abstract
- An option of increasing the luminosity of the Large Hadron Collider (LHC) at CERN to 1035 cm-2 s-1 has been envisaged to extend the physics reach of the machine. An efficient tracking down to a few centimetres from the interaction point will be required to exploit the physics potential of the upgraded LHC. As a consequence, the semiconductor detectors close to the interaction region will receive severe doses of fast hadron irradiation and the inner tracker detectors will need to survive fast hadron fluences of up to above 1016cm-2. The CERN-RD50 project "Development of Radiation Hard Semiconductor Devices for Very High Luminosity Colliders" has been established in 2002 to explore detector materials and technologies that will allow to operate devices up to, or beyond, this limit. The strategies followed by RD50 to enhance the radiation tolerance include the development of new or defect engineered detector materials (SiC, GaN, Czochralski and epitaxial silicon, oxygen enriched Float Zone silicon), the improvement of present detector designs and the understanding of the microscopic defects causing the degradation of the irradiated detectors. The latest advancements within the RD50 collaboration on radiation hard semiconductor detectors will be reviewed and discussed in this work.
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| 6. |
- Cedres, Nira, et al.
(author)
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Subjective Impairments in Olfaction and Cognition Predict Dissociated Behavioral Outcomes
- 2022
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In: The journals of gerontology. Series B, Psychological sciences and social sciences. - : Oxford University Press (OUP). - 1079-5014 .- 1758-5368. ; 78:1, s. 1-9
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Journal article (peer-reviewed)abstract
- Background: Self-rated subjective cognitive decline (SCD) and subjective olfactory impairment (SOI) are associated with objective cognitive decline and dementia. However, their relationship and co-occurrence is unknown. We aimed to (a) describe the occurrence of SOI, SCD and their overlap in the general population; (b) compare SOI and SCD in terms of longitudinal associations with corresponding objective olfactory and cognitive measures; and (c) describe how SOI and SCD may lead to distinct sensory and cognitive outcomes.Methods: Cognitively unimpaired individuals from the third wave of the Swedish population-based Betula study (n = 784, aged 35–90 years; 51% females) were split into self-rated SOI, SCD, overlapping SCD + SOI, and controls. Between-subject and within-subject repeated-measures MANCOVA were used to compare the groups regarding odor identification, cognition, age, sex, and education. Spearman correlation was used to assess the different patterns of association between olfaction and cognition across groups.Results: SOI was present in 21.1%, whereas SCD was present in 9.9% of participants. According to a chi-square analysis, the SCD + SOI overlap (2.7%) is on a level that could be expected if the phenomena were independent. Odor identification in SOI showed decline at the 10-year follow-up (n = 284) and was positively associated with cognition. The SOI and SCD groups showed distinct cognitive-olfactory profiles at follow-up.Conclusions: SOI occur independently of SCD in the population, and these risk factors are associated with different cognitive and olfactory outcomes. The biological causes underlying SOI and SCD, as well as the risk for future cognitive impairment, need further investigation.
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| 7. |
- Chen, Hongjie, et al.
(author)
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Large-scale cross-cancer fine-mapping of the 5p15.33 region reveals multiple independent signals
- 2021
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In: Human Genetics and Genomics Advances. - : Cell Press. - 2666-2477. ; 2:3
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Journal article (peer-reviewed)abstract
- Genome-wide association studies (GWASs) have identified thousands of cancer risk loci revealing many risk regions shared across multiple cancers. Characterizing the cross-cancer shared genetic basis can increase our understanding of global mechanisms of cancer development. In this study, we collected GWAS summary statistics based on up to 375,468 cancer cases and 530,521 controls for fourteen types of cancer, including breast (overall, estrogen receptor [ER]-positive, and ER-negative), colorectal, endometrial, esophageal, glioma, head/neck, lung, melanoma, ovarian, pancreatic, prostate, and renal cancer, to characterize the shared genetic basis of cancer risk. We identified thirteen pairs of cancers with statistically significant local genetic correlations across eight distinct genomic regions. Specifically, the 5p15.33 region, harboring the TERT and CLPTM1L genes, showed statistically significant local genetic correlations for multiple cancer pairs. We conducted a cross-cancer fine-mapping of the 5p15.33 region based on eight cancers that showed genome-wide significant associations in this region (ER-negative breast, colorectal, glioma, lung, melanoma, ovarian, pancreatic, and prostate cancer). We used an iterative analysis pipeline implementing a subset-based meta-analysis approach based on cancer-specific conditional analyses and identified ten independent cross-cancer associations within this region. For each signal, we conducted cross-cancer fine-mapping to prioritize the most plausible causal variants. Our findings provide a more in-depth understanding of the shared inherited basis across human cancers and expand our knowledge of the 5p15.33 region in carcinogenesis.
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| 8. |
- Claesson, Alexander, et al.
(author)
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Laboratory fire experiments with a 1/3 train carriage mockup
- 2012
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Reports (other academic/artistic)abstract
- A total of six fire tests were conducted in a mock-up of a subway carriage that is about 1/3 of a full wagon length. They were carried out under a large scale calorimeter in a laboratory environment. The aim of the tests was to investigate the initial fire growth in a corner scenario using different types of ignition sources that could lead to a flashover situation. The ignition sources used were either a wood crib placed on a corner seat or one liter of petrol poured on the corner seat and the neighboring floor together with a backpack. The amount of luggage and wood cribs in the neighborhood of the ignition source was continuously increased in order to identify the limits for flashover in the test-setup. The tests showed that the combustible boards on parts of the walls had a significant effect on the fire spread. In the cases where the initial fire did not exceed a range of 400 – 600 kW no flashover was observed. If the initial fire grew up to 700 – 900 kW a flashover was observed. The maximum heat release rate during a short flashover period for this test set-up was about 3.5 MW. The time to reach flashover was highly dependent on the ignition type, wood cribs or backpack and petrol.
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| 9. |
- Corvaisier, Matthieu, et al.
(author)
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The γ-tubulin meshwork assists in the recruitment of PCNA to chromatin in mammalian cells
- 2021
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In: Communications biology. - : Springer Science and Business Media LLC. - 2399-3642. ; 4:1, s. 767-
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Journal article (peer-reviewed)abstract
- Changes in the location of γ-tubulin ensure cell survival and preserve genome integrity. We investigated whether the nuclear accumulation of γ-tubulin facilitates the transport of proliferating cell nuclear antigen (PCNA) between the cytosolic and the nuclear compartment in mammalian cells. We found that the γ-tubulin meshwork assists in the recruitment of PCNA to chromatin. Also, decreased levels of γ-tubulin reduce the nuclear pool of PCNA. In addition, the γ-tubulin C terminus encodes a PCNA-interacting peptide (PIP) motif, and a γ-tubulin–PIP-mutant affects the nuclear accumulation of PCNA. In a cell-free system, PCNA and γ-tubulin formed a complex. In tumors, there is a significant positive correlation between TUBG1 and PCNA expression. Thus, we report a novel mechanism that constitutes the basis for tumor growth by which the γ-tubulin meshwork maintains indefinite proliferation by acting as an opportune scaffold for the transport of PCNA from the cytosol to the chromatin.
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| 10. |
- Domellöf, Fatima Pedrosa, et al.
(author)
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Desmin in extraocular muscles
- 2015
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In: Investigative Ophthalmology and Visual Science. - : ASSOC RESEARCH VISION OPHTHALMOLOGY. - 0146-0404 .- 1552-5783. ; 56:7
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Journal article (other academic/artistic)
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