| 1. |
- Beal, Jacob, et al.
(författare)
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Robust estimation of bacterial cell count from optical density
- 2020
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Ingår i: Communications Biology. - : Springer Science and Business Media LLC. - 2399-3642. ; 3:1
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Tidskriftsartikel (refereegranskat)abstract
- Optical density (OD) is widely used to estimate the density of cells in liquid culture, but cannot be compared between instruments without a standardized calibration protocol and is challenging to relate to actual cell count. We address this with an interlaboratory study comparing three simple, low-cost, and highly accessible OD calibration protocols across 244 laboratories, applied to eight strains of constitutive GFP-expressing E. coli. Based on our results, we recommend calibrating OD to estimated cell count using serial dilution of silica microspheres, which produces highly precise calibration (95.5% of residuals <1.2-fold), is easily assessed for quality control, also assesses instrument effective linear range, and can be combined with fluorescence calibration to obtain units of Molecules of Equivalent Fluorescein (MEFL) per cell, allowing direct comparison and data fusion with flow cytometry measurements: in our study, fluorescence per cell measurements showed only a 1.07-fold mean difference between plate reader and flow cytometry data.
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| 2. |
- Hylén, Astrid, 1991, et al.
(författare)
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Deep-water inflow event increases sedimentary phosphorus release on a multi-year scale
- 2021
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Ingår i: Biogeosciences. - : Copernicus GmbH. - 1726-4170 .- 1726-4189. ; 18, s. 2981-3004
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Tidskriftsartikel (refereegranskat)abstract
- Phosphorus fertilisation (eutrophication) is expanding oxygen depletion in coastal systems worldwide. Under low-oxygen bottom water conditions, phosphorus release from the sediment is elevated, which further stimulates primary production. It is commonly assumed that re-oxygenation could break this “vicious cycle” by increasing the sedimentary phosphorus retention. Recently, a deep-water inflow into the Baltic Sea created a natural in situ experiment that allowed us to investigate if temporary re-oxygenation stimulates sedimentary retention of dissolved inorganic phosphorus (DIP). Surprisingly, during this 3-year study, we observed a transient but considerable increase, rather than a decrease, in the sediment efflux of DIP and other dissolved biogenic compounds. This suggested that the oxygenated inflow elevated the organic matter degradation in the sediment, likely due to an increase in organic matter supply to the deeper basins, potentially combined with a transient stimulation of the mineralisation efficiency. As a result, the net sedimentary DIP release per m2 was 56%–112% higher over the years following the re-oxygenation than before. In contrast to previous assumptions, our results show that inflows of oxygenated water to anoxic bottom waters can increase the sedimentary phosphorus release.
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| 3. |
- Sheng, Renwang, et al.
(författare)
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Material stiffness in cooperation with macrophage paracrine signals determines the tenogenic differentiation of mesenchymal stem cells
- 2023
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Ingår i: Advanced Science. - : John Wiley & Sons. - 2198-3844. ; 10:17
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Tidskriftsartikel (refereegranskat)abstract
- Stiffness is an important physical property of biomaterials that determines stem cell fate. Guiding stem cell differentiation via stiffness modulation has been considered in tissue engineering. However, the mechanism by which material stiffness regulates stem cell differentiation into the tendon lineage remains controversial. Increasing evidence demonstrates that immune cells interact with implanted biomaterials and regulate stem cell behaviors via paracrine signaling; however, the role of this mechanism in tendon differentiation is not clear. In this study, polydimethylsiloxane (PDMS) substrates with different stiffnesses are developed, and the tenogenic differentiation of mesenchymal stem cells (MSCs) exposed to different stiffnesses and macrophage paracrine signals is investigated. The results reveal that lower stiffnesses facilitates tenogenic differentiation of MSCs, while macrophage paracrine signals at these stiffnesses suppress the differentiation. When exposed to these two stimuli, MSCs still exhibit enhanced tendon differentiation, which is further elucidated by global proteomic analysis. Following subcutaneous implantation in rats for 2 weeks, soft biomaterial induces only low inflammation and promotes tendon-like tissue formation. In conclusion, the study demonstrates that soft, rather than stiff, material has a greater potential to guide tenogenic differentiation of stem cells, which provides comprehensive evidence for optimized bioactive scaffold design in tendon tissue engineering.
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