| 1. |
- Hardisty, Alex R., et al.
(author)
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BioVeL: A virtual laboratory for data analysis and modelling in biodiversity science and ecology
- 2016
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In: BMC Ecology. - : Springer Science and Business Media LLC. - 1472-6785. ; 16
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Journal article (peer-reviewed)abstract
- © 2016 The Author(s).Background: Making forecasts about biodiversity and giving support to policy relies increasingly on large collections of data held electronically, and on substantial computational capability and capacity to analyse, model, simulate and predict using such data. However, the physically distributed nature of data resources and of expertise in advanced analytical tools creates many challenges for the modern scientist. Across the wider biological sciences, presenting such capabilities on the Internet (as "Web services") and using scientific workflow systems to compose them for particular tasks is a practical way to carry out robust "in silico" science. However, use of this approach in biodiversity science and ecology has thus far been quite limited. Results: BioVeL is a virtual laboratory for data analysis and modelling in biodiversity science and ecology, freely accessible via the Internet. BioVeL includes functions for accessing and analysing data through curated Web services; for performing complex in silico analysis through exposure of R programs, workflows, and batch processing functions; for on-line collaboration through sharing of workflows and workflow runs; for experiment documentation through reproducibility and repeatability; and for computational support via seamless connections to supporting computing infrastructures. We developed and improved more than 60 Web services with significant potential in many different kinds of data analysis and modelling tasks. We composed reusable workflows using these Web services, also incorporating R programs. Deploying these tools into an easy-to-use and accessible 'virtual laboratory', free via the Internet, we applied the workflows in several diverse case studies. We opened the virtual laboratory for public use and through a programme of external engagement we actively encouraged scientists and third party application and tool developers to try out the services and contribute to the activity. Conclusions: Our work shows we can deliver an operational, scalable and flexible Internet-based virtual laboratory to meet new demands for data processing and analysis in biodiversity science and ecology. In particular, we have successfully integrated existing and popular tools and practices from different scientific disciplines to be used in biodiversity and ecological research.
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| 2. |
- Lyytikäinen-Saarenmaa, Päivi, et al.
(author)
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Monitoring European pine sawfly population densities with pheromone traps in young pine plantations
- 1999
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In: Forest Ecology and Management. - 0378-1127. ; 124:2-3, s. 113-121
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Journal article (peer-reviewed)abstract
- Field trials utilizing pheromone traps were evaluated to develop a population monitoring and predicting system for the European pine sawfly (Neodiprion sertifer). Larval density was censused in a transect across each study site. Three traps per site were baited with 100μg of (2S,3S,7S)-3,7-dimethyl-2-pentadecyl (diprionyl) acetate. During a two-year period traps loaded with 1, 10 and 100 μg of diprionyl acetate were compared. Correlations and coefficients of determination between numbers of captured males and larvae of the same or successive generations were seldom high. Between-generation relationships were significant, when population density was increasing. Having years with increasing densities in a row, the present monitoring method might provide warning of an outbreak.
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| 3. |
- Lyytikäinen-Saarenmaa, Päivi, et al.
(author)
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Predicting pine sawfly population densities and subsequent defoliation with pheromone traps
- 2001
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In: INTEGRATED MANAGEMENT AND DYNAMICS OF FOREST DEFOILIATING INSECTS, PROCEEDINGS. ; 277, s. 108-116
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Conference paper (other academic/artistic)abstract
- Field in Finland to develop a monitoring and prediction trials were conducted from 1989 to 1993 method using pheromone traps for European pine sawfly (Neadiprion sertifer Geoffr.) population densities and needle defoliation. Three traps per site were baited with 100 mug of(2S,3S,7S) - 3,7 - dimethyl - 2 - pentadecyl acetate (diprionyl) at sites representing advanced pine stands. The number of overwintering eggs per sample branch was used to evaluate the effectiveness of using pheromone traps to estimate sawfly populations. The relationships between the number of males in traps, the number of eggs per branch in the subsequent generation, and the number of needle-year classes after the subsequent growing season were highly correlated. The risk threshold for moderate to heavy defoliation was around 1,000 males/trap. Our results suggest that after some minor improvements, a pheromone-based monitoring system for the European pine sawfly would provide an effective tool for integrated pest management programs and successful forest management in coniferous pine-dominated forests.
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| 4. |
- Manninen, AM, et al.
(author)
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The role of low-level ozone exposure and mycorrhizas in chemical quality and insect herbivore performance on Scots pine seedlings
- 2001
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In: Global Change Biology. - : Wiley. - 1354-1013. ; 6:1, s. 111-121
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Journal article (peer-reviewed)abstract
- The effects of low-level ozone exposure and suppression of natural mycorrhizas on the above-ground chemical quality of Scots pine (Pinus sylvestris L.) needles and insect herbivore performance were studied in a two-year field experiment. Seedlings were fumigated with the ozone doses 1.5–1.7 times the ambient, and natural mycorrhizal infection level was about 35% reduced in roots with fungicide propiconazole. On ozone-exposed seedlings the mean relative growth rate (MRGR) of Lygus rugulipennis Popp. nymphs was lower than on ambient ozone seedlings, but Gilpinia pallida Klug sawfly larvae grew better on elevated ozone seedlings than on ambient ozone seedlings. MRGR of Schizolachnus pineti Fabr. and Cinara pinea L. aphid nymphs or Neodiprion sertifer Geoffr. sawfly larvae or the oviposition of L. rugulipennis and N. sertifer were not affected by ozone exposure. Although ozone exposure did not affect total phenolics, total terpene, total or individual resin acid, total free amino acid, nutrient or sugar concentrations in needles, MRGR of L. rugulipennis positively correlated with total terpenes and MRGR of G. pallida positively with total amino acids. In addition, ozone exposure increased serine and proline concentration and marginally also starch concentration in needles. When mycorrhizas were reduced with fungicide, only MRGR of L. rugulipennis nymphs increased, but performance of other insect herbivores studied was not changed. However, number of L. rugulipennis eggs correlated positively with mycorrhizal infection level and also with total sugars. Reduction of mycorrhizas did not strongly affect the concentrations of analysed compounds in needles, because only phosphorus and potassium and some individual resin acids were reduced by fungicide treatment. These results suggest that low-level ozone exposure and moderately declined mycorrhizal infection do not drastically affect either the above-ground chemical quality of Scots pine seedlings or performance of studied insect herbivores.
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| 5. |
- Olsson, Per-Ola, et al.
(author)
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Development of a method for monitoring of insect induced forest defoliation – limitation of MODIS data in Fennoscandian forest landscapes
- 2016
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In: Silva Fennica. - : Finnish Society of Forest Science. - 2242-4075. ; 50:2
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Journal article (peer-reviewed)abstract
- We investigated if coarse-resolution satellite data from the MODIS sensor can be used for regional monitoring of insect disturbances in Fennoscandia. A damage detection method based on z-scores of seasonal maximums of the 2-band Enhanced Vegetation Index (EVI2) was developed. Time-series smoothing was applied and Receiver Operating Characteristics graphs were used for optimisation. The method was developed in fragmented and heavily managed forests in eastern Finland dominated by Scots pine (Pinus sylvestris L.) (pinaceae) and with defoliation of European pine sawfly (Neodiprion sertifer Geoffr.) (Hymenoptera: Diprionidae) and common pine sawfly (Diprion pini L.) (Hymenoptera: Diprionidae). The method was also applied to subalpine mountain birch (Betula pubescens ssp. Czerepanovii N.I. Orlova) forests in northern Sweden, infested by autumnal moth (Epirrita autumnata Borkhausen) and winter moth (Operophtera brumata L.). In Finland, detection accuracies were fairly low with 50% of the damaged stands detected, and a misclassification of healthy stands of 22%. In areas with long outbreak histories the method resulted in extensive misclassification. In northern Sweden accuracies were higher, with 75% of the damage detected and a misclassification of healthy samples of 19%. Our results indicate that MODIS data may fail to detect damage in fragmented forests, particularly when the damage history is long. Therefore, regional studies based on these data may underestimate defoliation. However, the method yielded accurate results in homogeneous forest ecosystems and when long-enough periods without damage could be identified. Furthermore, the method is likely to be useful for insect disturbance detection using future medium-resolution data, e.g. from Sentinel‑2.
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| 6. |
- Tikkanen, OP, et al.
(author)
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Adaptation of a generalist moth, Operophtera brumata, to variable budburst phenology of host plants
- 2002
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In: Entomologia Experimentalis et Applicata. - 1570-7458. ; 103:2, s. 123-133
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Journal article (peer-reviewed)abstract
- The adaptation of three allopatric populations of a generalist moth, Operophtera brumata (L.), on two tree species, Prunus padus (L.) and Quercus robur (L.) which represent the extremes of the timing of budburst in spring, was studied in Finland and Sweden. The synchrony of the hatching and budbursting was monitored, and its importance to dispersal and growth of larvae was assessed by rearing cohorts of larvae, whose hatching dates were manipulated, on both hosts. In addition, the realised heritability of the hatching time was estimated. Experimental populations hatched in approximate synchrony with the budburst of their original host species. As a result of the manipulation of the hatching dates of larvae, the growth rates of larvae decreased and the dispersal rates increased on both hosts in relation to the ageing of foliage. The realised heritability of hatching times was rather high (0.63). There were fewer differences in the host use efficiency and behaviour of the experimental populations than in the hatching phenology. The synchrony of hatching with the budburst of the local dominant host plant is probably a result of stabilising selection.
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| 7. |
- Östrand, Fredrik, et al.
(author)
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Capture rates of the European pine sawfly, Neodiprion sertifer , in pheromone traps, with special regard to effects of wind speed
- 2001
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In: Journal of Chemical Ecology. - 1573-1561. ; 27:8, s. 1561-1574
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Journal article (peer-reviewed)abstract
- Males of the European pine sawfly, Neodiprion sertifer Geoffr., were marked and released downwind from pheromone traps, baited with 100 mug of the sex pheromone (2S,3S,7S)-3,7-dimethyl-2-pentadecyl acetate. Males were released 5 m downwind from one trap, or downwind from five traps, 50 m or 200 m away. The average capture rates after 24 hr were 21.5%, 17.7% and 3.8%, respectively. The capture rate was highest at moderate wind speeds (1-2 m/sec) in the 50 m experiments, whereas it decreased above wind speeds of 1.5 m/sec in the 200 m experiments. With no precipitation and > 13.5 degreesC during overcast, wind speed is presumably the most important climatic factor for N. sertifer males flying upwind to a pheromone source. Travel time, the elapsed time form take-off to landing on the trap, varied considerably, and the shortest recorded travel times were 1, 6 and 45 min for the 5, 50, and 200 m experiments, respectively. The trap efficiency i.e., number of captured males per number of males that landed on the trap, was estimated at 52% in the 5 m experiments. The sampling range after 24 hr was calculated at approximately 400 m by regression analysis. The combination of the males' flight ability during upwind progress and their longevity (12 days), suggests a potentially large seasonal sampling range of the traps used in this study.
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