| 1. |
- Hillier, Ladeana W, et al.
(author)
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Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
- 2004
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In: Nature. - 0028-0836 .- 1476-4687. ; 432:7018, s. 695-716
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Journal article (peer-reviewed)abstract
- We present here a draft genome sequence of the red jungle fowl, Gallus gallus. Because the chicken is a modern descendant of the dinosaurs and the first non-mammalian amniote to have its genome sequenced, the draft sequence of its genome--composed of approximately one billion base pairs of sequence and an estimated 20,000-23,000 genes--provides a new perspective on vertebrate genome evolution, while also improving the annotation of mammalian genomes. For example, the evolutionary distance between chicken and human provides high specificity in detecting functional elements, both non-coding and coding. Notably, many conserved non-coding sequences are far from genes and cannot be assigned to defined functional classes. In coding regions the evolutionary dynamics of protein domains and orthologous groups illustrate processes that distinguish the lineages leading to birds and mammals. The distinctive properties of avian microchromosomes, together with the inferred patterns of conserved synteny, provide additional insights into vertebrate chromosome architecture.
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| 2. |
- Björkman, Anne, 1981, et al.
(author)
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Plant functional trait change across a warming tundra biome
- 2018
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In: Nature. - : Springer Science and Business Media LLC. - 0028-0836 .- 1476-4687. ; 562:7725, s. 57-62
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Journal article (peer-reviewed)abstract
- The tundra is warming more rapidly than any other biome on Earth, and the potential ramifications are far-reaching because of global feedback effects between vegetation and climate. A better understanding of how environmental factors shape plant structure and function is crucial for predicting the consequences of environmental change for ecosystem functioning. Here we explore the biome-wide relationships between temperature, moisture and seven key plant functional traits both across space and over three decades of warming at 117 tundra locations. Spatial temperature–trait relationships were generally strong but soil moisture had a marked influence on the strength and direction of these relationships, highlighting the potentially important influence of changes in water availability on future trait shifts in tundra plant communities. Community height increased with warming across all sites over the past three decades, but other traits lagged far behind predicted rates of change. Our findings highlight the challenge of using space-for-time substitution to predict the functional consequences of future warming and suggest that functions that are tied closely to plant height will experience the most rapid change. They also reveal the strength with which environmental factors shape biotic communities at the coldest extremes of the planet and will help to improve projections of functional changes in tundra ecosystems with climate warming.
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| 3. |
- Björkman, Anne, 1981, et al.
(author)
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Tundra Trait Team: A database of plant traits spanning the tundra biome
- 2018
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In: Global Ecology and Biogeography. - : Wiley. - 1466-822X .- 1466-8238. ; 27:12, s. 1402-1411
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Journal article (peer-reviewed)abstract
- © 2018 The Authors Global Ecology and Biogeography Published by John Wiley & Sons Ltd Motivation: The Tundra Trait Team (TTT) database includes field-based measurements of key traits related to plant form and function at multiple sites across the tundra biome. This dataset can be used to address theoretical questions about plant strategy and trade-offs, trait–environment relationships and environmental filtering, and trait variation across spatial scales, to validate satellite data, and to inform Earth system model parameters. Main types of variable contained: The database contains 91,970 measurements of 18 plant traits. The most frequently measured traits (>1,000 observations each) include plant height, leaf area, specific leaf area, leaf fresh and dry mass, leaf dry matter content, leaf nitrogen, carbon and phosphorus content, leaf C:N and N:P, seed mass, and stem specific density. Spatial location and grain: Measurements were collected in tundra habitats in both the Northern and Southern Hemispheres, including Arctic sites in Alaska, Canada, Greenland, Fennoscandia and Siberia, alpine sites in the European Alps, Colorado Rockies, Caucasus, Ural Mountains, Pyrenees, Australian Alps, and Central Otago Mountains (New Zealand), and sub-Antarctic Marion Island. More than 99% of observations are georeferenced. Time period and grain: All data were collected between 1964 and 2018. A small number of sites have repeated trait measurements at two or more time periods. Major taxa and level of measurement: Trait measurements were made on 978 terrestrial vascular plant species growing in tundra habitats. Most observations are on individuals (86%), while the remainder represent plot or site means or maximums per species. Software format: csv file and GitHub repository with data cleaning scripts in R; contribution to TRY plant trait database (www.try-db.org) to be included in the next version release.
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| 4. |
- Hudson, Thomas J., et al.
(author)
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International network of cancer genome projects
- 2010
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In: Nature. - : Springer Science and Business Media LLC. - 0028-0836 .- 1476-4687. ; 464:7291, s. 993-998
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Journal article (peer-reviewed)abstract
- The International Cancer Genome Consortium (ICGC) was launched to coordinate large-scale cancer genome studies in tumours from 50 different cancer types and/or subtypes that are of clinical and societal importance across the globe. Systematic studies of more than 25,000 cancer genomes at the genomic, epigenomic and transcriptomic levels will reveal the repertoire of oncogenic mutations, uncover traces of the mutagenic influences, define clinically relevant subtypes for prognosis and therapeutic management, and enable the development of new cancer therapies.
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| 5. |
- Awuah, Joana, et al.
(author)
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Can seasonal fire management reduce the risk of carbon loss from wildfires in a protected Guinea savanna?
- 2022
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In: Ecosphere. - : Wiley. - 2150-8925 .- 2150-8925. ; 13:11
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Journal article (peer-reviewed)abstract
- Fire is fundamental to the functioning of tropical savannas and routinely used as a management tool. Shifting prescribed burning from later to earlier in the growing season has the potential to reduce greenhouse gas emissions. However, large uncertainties surround the impact of seasonal burning on longer term plant and soil carbon sequestration. In this study, we quantify ecosystem carbon storage across burn seasons and histories in a wet-to-mesic Guinea tropical savanna in Mole National Park, Ghana. Aboveground (plant and litter) and belowground (soil plus roots) carbon storage was quantified across four burning seasons and histories: recent (<3 years) early-season burns, recent late-season burns, old (>4 years) late-season burns, and long-unburned (>15 years) sites. We found that recent late-season burns significantly lowered belowground carbon storage to a depth of 17 cm compared with all other burn seasons and histories. Belowground carbon was 1.2 kg C m−2, or 27% lower, for recent late-season burns compared with prescribed early-season burns. However, in older late-season burns sites, belowground carbon “recovered” after 4–13 burn years to comparable storage as long-unburned and early-season burn sites. For most aboveground carbon pools, there was no significant difference in carbon storage across burn seasons and histories, except higher aboveground tree carbon in long-unburned sites. We suggest that observed changes in belowground carbon are likely due to the turnover and production of root carbon. Prescribed early-season burning is promoted to reduce greenhouse gas emissions and our findings affirm that early-season burning has limited impact on plant and soil carbon stocks compared with long-unburned sites. While early-season burning regimes will have some patches that become late-season wildfires, our results suggest on balance early-season burning regimes are a low-risk land management practice in reducing plant and soil carbon storage losses and sustaining a patch-mosaicked landscape with multiple other ecosystem service benefits for savannas.
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| 6. |
- Barbero-Palacios, Laura, et al.
(author)
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Herbivore diversity effects on Arctic tundra ecosystems : a systematic review
- 2024
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In: Environmental Evidence. - : BioMed Central (BMC). - 2047-2382. ; 13:1
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Research review (peer-reviewed)abstract
- Background: Northern ecosystems are strongly influenced by herbivores that differ in their impacts on the ecosystem. Yet the role of herbivore diversity in shaping the structure and functioning of tundra ecosystems has been overlooked. With climate and land-use changes causing rapid shifts in Arctic species assemblages, a better understanding of the consequences of herbivore diversity changes for tundra ecosystem functioning is urgently needed. This systematic review synthesizes available evidence on the effects of herbivore diversity on different processes, functions, and properties of tundra ecosystems.Methods: Following a published protocol, our systematic review combined primary field studies retrieved from bibliographic databases, search engines and specialist websites that compared tundra ecosystem responses to different levels of vertebrate and invertebrate herbivore diversity. We used the number of functional groups of herbivores (i.e., functional group richness) as a measure of the diversity of the herbivore assemblage. We screened titles, abstracts, and full texts of studies using pre-defined eligibility criteria. We critically appraised the validity of the studies, tested the influence of different moderators, and conducted sensitivity analyses. Quantitative synthesis (i.e., calculation of effect sizes) was performed for ecosystem responses reported by at least five articles and meta-regressions including the effects of potential modifiers for those reported by at least 10 articles.Review findings: The literature searches retrieved 5944 articles. After screening titles, abstracts, and full texts, 201 articles including 3713 studies (i.e., individual comparisons) were deemed relevant for the systematic review, with 2844 of these studies included in quantitative syntheses. The available evidence base on the effects of herbivore diversity on tundra ecosystems is concentrated around well-established research locations and focuses mainly on the impacts of vertebrate herbivores on vegetation. Overall, greater herbivore diversity led to increased abundance of feeding marks by herbivores and soil temperature, and to reduced total abundance of plants, graminoids, forbs, and litter, plant leaf size, plant height, and moss depth, but the effects of herbivore diversity were difficult to tease apart from those of excluding vertebrate herbivores. The effects of different functional groups of herbivores on graminoid and lichen abundance compensated each other, leading to no net effects when herbivore effects were combined. In turn, smaller herbivores and large-bodied herbivores only reduced plant height when occurring together but not when occurring separately. Greater herbivore diversity increased plant diversity in graminoid tundra but not in other habitat types.Conclusions: This systematic review underscores the importance of herbivore diversity in shaping the structure and function of Arctic ecosystems, with different functional groups of herbivores exerting additive or compensatory effects that can be modulated by environmental conditions. Still, many challenges remain to fully understand the complex impacts of herbivore diversity on tundra ecosystems. Future studies should explicitly address the role of herbivore diversity beyond presence-absence, targeting a broader range of ecosystem responses and explicitly including invertebrate herbivores. A better understanding of the role of herbivore diversity will enhance our ability to predict whether and where shifts in herbivore assemblages might mitigate or further amplify the impacts of environmental change on Arctic ecosystems.
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| 7. |
- Barrio, Isabel C., et al.
(author)
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Background invertebrate herbivory on dwarf birch (Betula glandulosa-nana complex) increases with temperature and precipitation across the tundra biome
- 2017
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In: Polar Biology. - : Springer. - 0722-4060 .- 1432-2056. ; 40:11, s. 2265-2278
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Journal article (peer-reviewed)abstract
- Chronic, low intensity herbivory by invertebrates, termed background herbivory, has been understudied in tundra, yet its impacts are likely to increase in a warmer Arctic. The magnitude of these changes is however hard to predict as we know little about the drivers of current levels of invertebrate herbivory in tundra. We assessed the intensity of invertebrate herbivory on a common tundra plant, the dwarf birch (Betula glandulosa-nana complex), and investigated its relationship to latitude and climate across the tundra biome. Leaf damage by defoliating, mining and gall-forming invertebrates was measured in samples collected from 192 sites at 56 locations. Our results indicate that invertebrate herbivory is nearly ubiquitous across the tundra biome but occurs at low intensity. On average, invertebrates damaged 11.2% of the leaves and removed 1.4% of total leaf area. The damage was mainly caused by external leaf feeders, and most damaged leaves were only slightly affected (12% leaf area lost). Foliar damage was consistently positively correlated with mid-summer (July) temperature and, to a lesser extent, precipitation in the year of data collection, irrespective of latitude. Our models predict that, on average, foliar losses to invertebrates on dwarf birch are likely to increase by 6-7% over the current levels with a 1 degrees C increase in summer temperatures. Our results show that invertebrate herbivory on dwarf birch is small in magnitude but given its prevalence and dependence on climatic variables, background invertebrate herbivory should be included in predictions of climate change impacts on tundra ecosystems.
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| 8. |
- Barrio, Isabel C., et al.
(author)
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Publisher Correction to : Background invertebrate herbivory on dwarf birch (Betula glandulosa-nana complex) increases with temperature and precipitation across the tundra biome (vol 40, pg 2265, 2017)
- 2018
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In: Polar Biology. - : Springer. - 0722-4060 .- 1432-2056. ; 41:8, s. 1653-1654
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Journal article (peer-reviewed)abstract
- The above mentioned article was originally scheduled for publication in the special issue on Ecology of Tundra Arthropods with guest editors Toke T. Hoye . Lauren E. Culler. Erroneously, the article was published in Polar Biology, Volume 40, Issue 11, November, 2017. The publisher sincerely apologizes to the guest editors and the authors for the inconvenience caused.
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| 9. |
- Bernes, Claes, et al.
(author)
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What are the impacts of reindeer/caribou (Rangifer tarandus L.) on arctic and alpine vegetation? : A systematic review protocol
- 2013
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In: Environmental Evidence. - : BioMed Central (BMC). - 2047-2382. ; 2
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Journal article (peer-reviewed)abstract
- Background: Reindeer and caribou (both belonging to the species Rangifer tarandus L.) are among the most important large herbivores in Eurasia’s and North America’s arctic, alpine and boreal zones. In Sweden, the impact of reindeer grazing on arctic and alpine vegetation has recently been re-evaluated. In the 1990s, records of grazing-related vegetation degradation helped to form a widespread perception that some mountain areas were overgrazed. However, later analyses have shown no evidence of large-scale overutilisation of reindeer ranges in the Swedish mountains.The present-day consensus is that overgrazing has been temporary and local, and that it rarely has caused permanent damage, but it is imperative to examine the scientific support for these views. Moreover, the Swedish Parliament has adopted an environmental quality objective according to which it is essential to preserve ‘a mountain landscape characterised by grazing’. No details have been given on how this goal is to be interpreted, which is another reason why the significance of reindeer grazing for arctic/alpine vegetation needs to be assessed.This protocol presents the methodology that will be used in a systematic review of the impact of reindeer herbivory in arctic and alpine ecosystems. The focus will be on Fennoscandia, but data from other parts of the range of R. tarandus will be used when deemed appropriate.Methods: The review will be based on primary field studies that compare vegetation subject to different degrees of reindeer/caribou herbivory (including grazing and browsing as well as trampling). Such comparisons can be either temporal, spatial or both. The review will cover impacts of herbivory in arctic, subarctic, alpine and subalpine areas (including the forest-tundra ecotone) across the range of R. tarandus, but not in boreal forests. Relevant aspects of vegetation include cover (abundance), biomass, diversity (e.g. species richness), structure, composition (including functional groups) and productivity.
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| 10. |
- Bernes, Claes, et al.
(author)
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What are the impacts of reindeer/caribou (Rangifer tarandus L.) on arctic and alpine vegetation? : A systematic review
- 2015
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In: Environmental Evidence. - : BMC. - 2047-2382. ; 4:4
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Research review (peer-reviewed)abstract
- Background: The reindeer (or caribou, Rangifer tarandus L.) has a natural range extending over much of Eurasia's and North America's arctic, alpine and boreal zones, yet its impact on vegetation is still unclear. This lack of a common understanding hampers both the management of wild and semi-domesticated reindeer populations and the preservation of biodiversity. To achieve a common platform, we have undertaken a systematic review of published studies that compare vegetation at sites with different reindeer densities. Besides biodiversity, we focused on effects on major plant growth forms. Methods: Searches for literature were made using online publication databases, search engines, specialist websites and bibliographies of literature reviews. Search terms were developed in English, Finnish, Norwegian, Russian and Swedish. Identified articles were screened for relevance based on titles, abstracts and full text using inclusion criteria set out in an a priori protocol. Relevant articles were then subject to critical appraisal of susceptibility to bias. Data on outcomes such as abundance, biomass, cover and species richness of vegetation were extracted together with metadata on site properties and other potential effect modifiers. Results: Our searches identified more than 6,000 articles. After screening for relevance, 100 of them remained. Critical appraisal excluded 60 articles, leaving 40 articles with 41 independent studies. Almost two thirds of these studies had been conducted in Fennoscandia. Meta-analysis could be made of data from 31 of the studies. Overall, effects of reindeer on species richness of vascular plants depended on temperature, ranging from negative at low temperature to positive at high temperature. Effects on forbs, graminoids, woody species, and bryophytes were weak or non-significant, whereas the effect on lichens was negative. However, many individual studies showed clear positive or negative effects, but the available information was insufficient to explain this context dependence. Conclusions: We see two pressing matters emerging from our study. First, there is a lack of research with which to build a circumpolar understanding of grazing effects, which calls for more studies using a common protocol to quantify reindeer impacts. Secondly, the highly context-dependent outcomes suggest that research and management have to consider local conditions. For instance, predictions of what a management decision would mean for the effects of reindeer on vegetation will have to take the variation of vegetation types and dominant growth forms, productivity, and grazing history into account. Policy and management have to go hand-in-hand with research in individual cases if the dynamics between plants, animals, and humans are to be sufficiently understood.
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