| 1. |
- Tabiri, S, et al.
(author)
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- 2021
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swepub:Mat__t
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| 2. |
- Bravo, L, et al.
(author)
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- 2021
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swepub:Mat__t
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| 3. |
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| 4. |
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| 5. |
- Muscarella, Robert, et al.
(author)
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The global abundance of tree palms
- 2020
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In: Global Ecology and Biogeography. - : Wiley. - 1466-822X .- 1466-8238. ; 29:9, s. 1495-1514
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Journal article (peer-reviewed)abstract
- AimPalms are an iconic, diverse and often abundant component of tropical ecosystems that provide many ecosystem services. Being monocots, tree palms are evolutionarily, morphologically and physiologically distinct from other trees, and these differences have important consequences for ecosystem services (e.g., carbon sequestration and storage) and in terms of responses to climate change. We quantified global patterns of tree palm relative abundance to help improve understanding of tropical forests and reduce uncertainty about these ecosystems under climate change.LocationTropical and subtropical moist forests.Time periodCurrent.Major taxa studiedPalms (Arecaceae).MethodsWe assembled a pantropical dataset of 2,548 forest plots (covering 1,191 ha) and quantified tree palm (i.e., ≥10 cm diameter at breast height) abundance relative to co‐occurring non‐palm trees. We compared the relative abundance of tree palms across biogeographical realms and tested for associations with palaeoclimate stability, current climate, edaphic conditions and metrics of forest structure.ResultsOn average, the relative abundance of tree palms was more than five times larger between Neotropical locations and other biogeographical realms. Tree palms were absent in most locations outside the Neotropics but present in >80% of Neotropical locations. The relative abundance of tree palms was more strongly associated with local conditions (e.g., higher mean annual precipitation, lower soil fertility, shallower water table and lower plot mean wood density) than metrics of long‐term climate stability. Life‐form diversity also influenced the patterns; palm assemblages outside the Neotropics comprise many non‐tree (e.g., climbing) palms. Finally, we show that tree palms can influence estimates of above‐ground biomass, but the magnitude and direction of the effect require additional work.ConclusionsTree palms are not only quintessentially tropical, but they are also overwhelmingly Neotropical. Future work to understand the contributions of tree palms to biomass estimates and carbon cycling will be particularly crucial in Neotropical forests.
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| 6. |
- Sumaila, U. Rashid, et al.
(author)
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WTO must ban harmful fisheries subsidies
- 2021
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In: Science. - : American Association for the Advancement of Science (AAAS). - 0036-8075 .- 1095-9203. ; 374:6567, s. 544-544
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Journal article (other academic/artistic)
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| 7. |
- Birney, Ewan, et al.
(author)
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Prepublication data sharing
- 2009
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In: Nature. - : Springer Science and Business Media LLC. - 0028-0836 .- 1476-4687. ; 461:7261, s. 168-170
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Journal article (peer-reviewed)abstract
- Rapid release of prepublication data has served the field of genomics well. Attendees at a workshop in Toronto recommend extending the practice to other biological data sets.
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| 8. |
- Block, Keith I., et al.
(author)
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Designing a broad-spectrum integrative approach for cancer prevention and treatment
- 2015
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In: Seminars in Cancer Biology. - : Academic Press. - 1044-579X .- 1096-3650. ; 35, s. S276-S304
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Research review (peer-reviewed)abstract
- Targeted therapies and the consequent adoption of "personalized" oncology have achieved notable successes in some cancers; however, significant problems remain with this approach. Many targeted therapies are highly toxic, costs are extremely high, and most patients experience relapse after a few disease-free months. Relapses arise from genetic heterogeneity in tumors, which harbor therapy-resistant immortalized cells that have adopted alternate and compensatory pathways (i.e., pathways that are not reliant upon the same mechanisms as those which have been targeted). To address these limitations, an international task force of 180 scientists was assembled to explore the concept of a low-toxicity "broadspectrum" therapeutic approach that could simultaneously target many key pathways and mechanisms. Using cancer hallmark phenotypes and the tumor microenvironment to account for the various aspects of relevant cancer biology, interdisciplinary teams reviewed each hallmark area and nominated a wide range of high-priority targets (74 in total) that could be modified to improve patient outcomes. For these targets, corresponding low-toxicity therapeutic approaches were then suggested, many of which were phytochemicals. Proposed actions on each target and all of the approaches were further reviewed for known effects on other hallmark areas and the tumor microenvironment Potential contrary or procarcinogenic effects were found for 3.9% of the relationships between targets and hallmarks, and mixed evidence of complementary and contrary relationships was found for 7.1%. Approximately 67% of the relationships revealed potentially complementary effects, and the remainder had no known relationship. Among the approaches, 1.1% had contrary, 2.8% had mixed and 62.1% had complementary relationships. These results suggest that a broad-spectrum approach should be feasible from a safety standpoint. This novel approach has potential to be relatively inexpensive, it should help us address stages and types of cancer that lack conventional treatment, and it may reduce relapse risks. A proposed agenda for future research is offered. (C) 2015 The Authors. Published by Elsevier Ltd.
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| 9. |
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| 10. |
- Eddy, Tyler D., et al.
(author)
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Energy Flow Through Marine Ecosystems : Confronting Transfer Efficiency
- 2021
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In: Trends in Ecology & Evolution. - : Elsevier BV. - 0169-5347 .- 1872-8383. ; 36:1, s. 76-86
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Research review (peer-reviewed)abstract
- Transfer efficiency is the proportion of energy passed between nodes in food webs. It is an emergent, unitless property that is difficult to measure, and responds dynamically to environmental and ecosystem changes. Because the consequences of changes in transfer efficiency compound through ecosystems, slight variations can have large effects on food availability for top predators. Here, we review the processes controlling transfer efficiency, approaches to estimate it, and known variations across ocean biomes. Both process-level analysis and observed macro-scale variations suggest that ecosystem-scale transfer efficiency is highly variable, impacted by fishing, and will decline with climate change. It is important that we more fully resolve the processes controlling transfer efficiency in models to effectively anticipate changes in marine ecosystems and fisheries resources.
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| 11. |
- El-Gebali, Sara, et al.
(author)
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The Pfam protein families database in 2019
- 2019
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In: Nucleic Acids Research. - : Oxford University Press (OUP). - 0305-1048 .- 1362-4962. ; 47:D1, s. D427-D432
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Journal article (peer-reviewed)abstract
- The last few years have witnessed significant changes in Pfam (https://pfam.xfam.org). The number of families has grown substantially to a total of 17,929 in release 32.0. New additions have been coupled with efforts to improve existing families, including refinement of domain boundaries, their classification into Pfam clans, as well as their functional annotation. We recently began to collaborate with the RepeatsDB resource to improve the definition of tandem repeat families within Pfam. We carried out a significant comparison to the structural classification database, namely the Evolutionary Classification of Protein Domains (ECOD) that led to the creation of 825 new families based on their set of uncharacterized families(EUFs). Furthermore, we also connected Pfam entries to the Sequence Ontology (SO) through mapping of the Pfam type definitions to SO terms. Since Pfam has many community contributors, we recently enabled the linking between authorship of all Pfam entries with the corresponding authors' ORCID identifiers. This effectively permits authors to claim credit for their Pfam curation and link them to their ORCID record.
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| 12. |
- Kim, HyeJin, et al.
(author)
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Towards a better future for biodiversity and people : Modelling Nature Futures
- 2023
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In: Global Environmental Change. - 0959-3780 .- 1872-9495. ; 82
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Journal article (peer-reviewed)abstract
- The Nature Futures Framework (NFF) is a heuristic tool for co-creating positive futures for nature and people. It seeks to open up a diversity of futures through mainly three value perspectives on nature - Nature for Nature, Nature for Society, and Nature as Culture. This paper describes how the NFF can be applied in modelling to support decision-making. First, we describe key considerations for the NFF in developing qualitative and quantitative scenarios: i) multiple value perspectives on nature as a state space where pathways improving nature toward a frontier can be represented, ii) mutually reinforcing key feedbacks of social-ecological systems that are important for nature conservation and human wellbeing, iii) indicators of multiple knowledge systems describing the evolution of complex social-ecological dynamics. We then present three approaches to modelling Nature Futures scenarios in the review, screening, and design phases of policy processes. This paper seeks to facilitate the integration of relational values of nature in models and strengthen modelled linkages across biodiversity, nature's contributions to people, and quality of life.
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| 13. |
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| 14. |
- Kuehne, P, et al.
(author)
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Polarization Selection Rules for Inter-Landau-Level Transitions in Epitaxial Graphene Revealed by the Infrared Optical Hall Effect
- 2013
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In: Physical Review Letters. - : American Physical Society. - 0031-9007 .- 1079-7114. ; 111:7, s. e077402-
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Journal article (peer-reviewed)abstract
- We report on the polarization selection rules of inter-Landau-level transitions using reflection-type optical Hall effect measurements from 600 to 4000 cm-1 on epitaxial graphene grown by thermal decomposition of silicon carbide. We observe symmetric and antisymmetric signatures in our data due to polarization preserving and polarization mixing inter-Landau-level transitions, respectively. From field-dependent measurements, we identify that transitions in coupled graphene monolayers are governed by polarization mixing selection rules, whereas transitions in decoupled graphene monolayers are governed by polarization preserving selection rules. The selection rules may find explanation by different coupling mechanisms of inter-Landau-level transitions with free charge carrier magneto-optic plasma oscillations.
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| 15. |
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| 16. |
- Yi, Chuixiang, et al.
(author)
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Climate control of terrestrial carbon exchange across biomes and continents
- 2010
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In: Environmental Research Letters. - : IOP Publishing. - 1748-9326. ; 5:3
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Journal article (peer-reviewed)abstract
- Understanding the relationships between climate and carbon exchange by terrestrial ecosystems is critical to predict future levels of atmospheric carbon dioxide because of the potential accelerating effects of positive climate-carbon cycle feedbacks. However, directly observed relationships between climate and terrestrial CO2 exchange with the atmosphere across biomes and continents are lacking. Here we present data describing the relationships between net ecosystem exchange of carbon (NEE) and climate factors as measured using the eddy covariance method at 125 unique sites in various ecosystems over six continents with a total of 559 site-years. We find that NEE observed at eddy covariance sites is (1) a strong function of mean annual temperature at mid-and high-latitudes, (2) a strong function of dryness at mid-and low-latitudes, and (3) a function of both temperature and dryness around the mid-latitudinal belt (45 degrees N). The sensitivity of NEE to mean annual temperature breaks down at similar to 16 degrees C (a threshold value of mean annual temperature), above which no further increase of CO2 uptake with temperature was observed and dryness influence overrules temperature influence.
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| 17. |
- Zammit, Mark C., et al.
(author)
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Laser-driven production of the antihydrogen molecular ion
- 2019
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In: Physical Review A: covering atomic, molecular, and optical physics and quantum information. - 2469-9926 .- 2469-9934. ; 100:4
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Journal article (peer-reviewed)abstract
- The feasibility of producing the molecular antihydrogen anion (H) over bar (-)(2) in the laboratory is investigated. Utilizing reaction rates calculated here involving the interaction of laser excited-state antihydrogen atoms held in magnetic minimum traps, key processes are identified that could lead to anion production, as well as competing effects leading to anti-atom loss. These are discussed in the context of present-day and near-future experimental capabilities.
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| 18. |
- Ardonne, Eddy, et al.
(author)
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Classification of metaplectic modular categories
- 2016
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In: Journal of Algebra. - : Elsevier BV. - 0021-8693 .- 1090-266X. ; 466, s. 141-146
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Journal article (peer-reviewed)abstract
- We obtain a classification of metaplectic modular categories: every metaplectic modular category is a gauging of the particle hole symmetry of a cyclic modular category. Our classification suggests a conjecture that every weakly-integral modular category can be obtained by gauging a symmetry (including the fermion parity) of a pointed (super-)modular category.
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| 19. |
- Bateman, A, et al.
(author)
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The Pfam protein families database
- 2004
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In: Nucleic acids research. - : Oxford University Press (OUP). - 1362-4962. ; 32:Database issue, s. D138-D141
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Journal article (peer-reviewed)
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| 20. |
- Bellm, Eric C., et al.
(author)
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An Optically Discovered Outburst from XTE J1859+226
- 2023
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In: Astrophysical Journal. - 0004-637X .- 1538-4357. ; 956:1
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Journal article (peer-reviewed)abstract
- Using the Zwicky Transient Facility, in 2021 February we identified the first known outburst of the black hole X-ray transient XTE J1859+226 since its discovery in 1999. The outburst was visible at X-ray, UV, and optical wavelengths for less than 20 days, substantially shorter than its full outburst of 320 days in 1999, and the observed peak luminosity was 2 orders of magnitude lower. Its peak bolometric luminosity was only 2 × 1035 erg s−1, implying an Eddington fraction of about 3 × 10−4. The source remained in the hard spectral state throughout the outburst. From optical spectroscopy measurements we estimate an outer disk radius of 1011 cm. The low observed X-ray luminosity is not sufficient to irradiate the entire disk, but we observe a surprising exponential decline in the X-ray light curve. These observations highlight the potential of optical and infrared synoptic surveys to discover low-luminosity activity from X-ray transients.
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| 21. |
- Bhatt, Uma S., et al.
(author)
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Implications of Arctic Sea Ice Decline for the Earth System
- 2014
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In: Annual Review of Environment and Resources. - : Annual Reviews. - 1545-2050 .- 1543-5938. ; 39, s. 57-57
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Research review (peer-reviewed)abstract
- Arctic sea ice decline has led to an amplification of surface warming and is projected to continue to decline from anthropogenic forcing, although the exact timing of ice-free summers is uncertain owing to large natural variability. Sea ice reductions affect surface heating patterns and the atmospheric pressure distribution, which may alter midlatitude extreme weather patterns. Increased light penetration and nutrient availability during spring from earlier ice breakup enhances primary production in the Arctic Ocean and its adjacent shelf seas. Ice-obligate marine mammals may be losers, whereas seasonally migrant species may be winners from rapid sea ice decline. Tundra greening is occurring across most of the Arctic, driven primarily by warming temperatures, and is displaying complex spatial patterns that are likely tied to other factors. Sea ice changes are affecting greenhouse gas exchanges as well as halogen chemistry in the Arctic. This review highlights the heterogeneous nature of Arctic change, which is vital for researchers to better understand.
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| 22. |
- Davenport, Simon C., et al.
(author)
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Spin-singlet Gaffnian wave function for fractional quantum Hall systems
- 2013
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In: Physical Review B. Condensed Matter and Materials Physics. - 1098-0121 .- 1550-235X. ; 87:4, s. 045310-
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Journal article (peer-reviewed)abstract
- We characterize in detail a wave function conceivable in fractional quantum Hall systems where a spin or equivalent degree of freedom is present. This wave function combines the properties of two previously proposed quantum Hall wave functions, namely the non-Abelian spin-singlet state and the nonunitary Gaffnian wave function. This is a spin-singlet generalization of the spin-polarized Gaffnian, which we call the "spin-singlet Gaffnian" (SSG). In this paper we present evidence demonstrating that the SSG corresponds to the ground state of a certain local Hamiltonian, which we explicitly construct, and, further, we provide a relatively simple analytic expression for the unique ground-state wave functions, which we define as the zero energy eigenstates of that local Hamiltonian. In addition, we have determined a certain nonunitary, rational conformal field theory which provides an underlying description of the SSG and we thus conclude that the SSG is ungapped in the thermodynamic limit. In order to verify our construction, we implement two recently proposed techniques for the analysis of fractional quantum Hall trial states: The "spin dressed squeezing algorithm," and the "generalized Pauli principle."
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| 23. |
- Dengler, Juergen, et al.
(author)
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GrassPlot - a database of multi-scale plant diversity in Palaearctic grasslands
- 2018
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In: Phytocoenologia. - : Schweizerbart. - 0340-269X. ; 48:3, s. 331-347
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Journal article (peer-reviewed)abstract
- GrassPlot is a collaborative vegetation-plot database organised by the Eurasian Dry Grassland Group (EDGG) and listed in the Global Index of Vegetation-Plot Databases (GIVD ID EU-00-003). GrassPlot collects plot records (releves) from grasslands and other open habitats of the Palaearctic biogeographic realm. It focuses on precisely delimited plots of eight standard grain sizes (0.0001; 0.001;... 1,000 m(2)) and on nested-plot series with at least four different grain sizes. The usage of GrassPlot is regulated through Bylaws that intend to balance the interests of data contributors and data users. The current version (v. 1.00) contains data for approximately 170,000 plots of different sizes and 2,800 nested-plot series. The key components are richness data and metadata. However, most included datasets also encompass compositional data. About 14,000 plots have near-complete records of terricolous bryophytes and lichens in addition to vascular plants. At present, GrassPlot contains data from 36 countries throughout the Palaearctic, spread across elevational gradients and major grassland types. GrassPlot with its multi-scale and multi-taxon focus complements the larger international vegetationplot databases, such as the European Vegetation Archive (EVA) and the global database " sPlot". Its main aim is to facilitate studies on the scale-and taxon-dependency of biodiversity patterns and drivers along macroecological gradients. GrassPlot is a dynamic database and will expand through new data collection coordinated by the elected Governing Board. We invite researchers with suitable data to join GrassPlot. Researchers with project ideas addressable with GrassPlot data are welcome to submit proposals to the Governing Board.
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| 24. |
- Gils, C., et al.
(author)
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Anyonic quantum spin chains : Spin-1 generalizations and topological stability
- 2013
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In: Physical Review B. Condensed Matter and Materials Physics. - : American Physical Society. - 1098-0121 .- 1550-235X. ; 87:23, s. 235120-
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Journal article (peer-reviewed)abstract
- There are many interesting parallels between systems of interacting non-Abelian anyons and quantum magnetism occurring in ordinary SU(2) quantum magnets. Here we consider theories of so-called SU(2)(k) anyons, well-known deformations of SU(2), in which only the first k + 1 angular momenta of SU(2) occur. In this paper, we discuss in particular anyonic generalizations of ordinary SU(2) spin chains with an emphasis on anyonic spin S = 1 chains. We find that the overall phase diagrams for these anyonic spin-1 chains closely mirror the phase diagram of the ordinary bilinear-biquadratic spin-1 chain including anyonic generalizations of the Haldane phase, the AKLT construction, and supersymmetric quantum critical points. A novel feature of the anyonic spin-1 chains is an additional topological symmetry that protects the gapless phases. Distinctions further arise in the form of an even/odd effect in the deformation parameter k when considering su(2)(k) anyonic theories with k >= 5, as well as for the special case of the su(2)(4) theory for which the spin-1 representation plays a special role. We also address anyonic generalizations of spin-1/2 chains with a focus on the topological protection provided for their gapless ground states. Finally, we put our results into the context of earlier generalizations of SU(2) quantum spin chains, in particular so-called (fused) Temperley-Lieb chains.
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| 25. |
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