SwePub - search: WFRF:(Hall Per 1954)

Enumeration	Reference	Cover	Find
1.	Berndt, Sonja I., et al. (author) Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture 2013 In: Nature Genetics. - : Springer Science and Business Media LLC. - 1061-4036 .- 1546-1718. ; 45:5, s. 501-U69 Journal article (peer-reviewed)abstract Approaches exploiting trait distribution extremes may be used to identify loci associated with common traits, but it is unknown whether these loci are generalizable to the broader population. In a genome-wide search for loci associated with the upper versus the lower 5th percentiles of body mass index, height and waist-to-hip ratio, as well as clinical classes of obesity, including up to 263,407 individuals of European ancestry, we identified 4 new loci (IGFBP4, H6PD, RSRC1 and PPP2R2A) influencing height detected in the distribution tails and 7 new loci (HNF4G, RPTOR, GNAT2, MRPS33P4, ADCY9, HS6ST3 and ZZZ3) for clinical classes of obesity. Further, we find a large overlap in genetic structure and the distribution of variants between traits based on extremes and the general population and little etiological heterogeneity between obesity subgroups.
2.	Bonaglia, Stefano, et al. (author) The fate of fixed nitrogen in marine sediments with low organic loading : an in situ study 2017 In: Biogeosciences. - : Copernicus GmbH. - 1726-4170 .- 1726-4189. ; 14:2, s. 285-300 Journal article (peer-reviewed)abstract Over the last decades, the impact of human activities on the global nitrogen (N) cycle has drastically increased. Consequently, benthic N cycling has mainly been studied in anthropogenically impacted estuaries and coasts, while in oligotrophic systems its understanding is still scarce. Here we report on benthic solute fluxes and on rates of denitrification, anammox, and dissimilatory nitrate reduction to ammonium (DNRA) studied by in situ incubations with benthic chamber landers during two cruises to the Gulf of Bothnia (GOB), a cold, oligotrophic basin located in the northern part of the Baltic Sea. Rates of N burial were also inferred to investigate the fate of fixed N in these sediments. Most of the total dissolved fixed nitrogen (TDN) diffusing to the water column was composed of organic N. Average rates of dinitrogen (N-2) production by denitrification and anammox (range: 53-360 mu mol Nm(-2) day(-1)) were comparable to those from Arctic and subarctic sediments worldwide (range: 34-344 mu mol Nm(-2) day(-1)). Anammox accounted for 18-26% of the total N2 production. Absence of free hydrogen sulfide and low concentrations of dissolved iron in sediment pore water suggested that denitrification and DNRA were driven by organic matter oxidation rather than chemolithotrophy. DNRA was as important as denitrification at a shallow, coastal station situated in the northern Bothnian Bay. At this pristine and fully oxygenated site, ammonium regeneration through DNRA contributed more than one-third to the TDN efflux and accounted, on average, for 45% of total nitrate reduction. At the offshore stations, the proportion of DNRA in relation to denitrification was lower (0-16% of total nitrate reduction). Median value and range of benthic DNRA rates from the GOB were comparable to those from the southern and central eutrophic Baltic Sea and other temperate estuaries and coasts in Europe. Therefore, our results contrast with the view that DNRA is negligible in cold and well-oxygenated sediments with low organic carbon loading. However, the mechanisms behind the variability in DNRA rates between our sites were not resolved. The GOB sediments were a major source (237 kt yr(-1), which corresponds to 184% of the external N load) of fixed N to the water column through recycling mechanisms. To our knowledge, our study is the first to document the simultaneous contribution of denitrification, DNRA, anammox, and TDN recycling combined with in situ measurements.
3.	Hall, Marcus, et al. (author) Reproductive homing and fine-scaled genetic structuring of anadromous Baltic Sea perch (Perca fluviatilis) 2022 In: Fisheries Management and Ecology. - : John Wiley & Sons. - 0969-997X .- 1365-2400. ; 29:5, s. 586-596 Journal article (peer-reviewed)abstract To investigate the population dynamics of anadromous Baltic Sea perch Perca fluviatilis (Linnaeus), we studied the migratory behaviour (arrival to spawning location) and population structure (genetic structure and differentiation) of three closely located (<50 km) populations. Spawning migration lasted for 32-80 days, and passive integrated transponder tag (PIT-tag) data indicated that anadromous perch displayed reproductive homing. Populations were differentiated, despite low levels of gene flow (3%-5%), and differentiation increased with increasing geographic distance. This fine-scaled spatial structuring was likely, at least partly, explained by homing behaviour. Analyses of temporal within-stream substructuring yielded inconclusive results, so further studies are required to evaluate this. Taken together, our findings highlight the potential for fine-scaled genetic structuring in anadromous perch and indicate that multiple mechanisms, such as isolation by distance, homing, and reproductive timing could contribute to this pattern. This illustrates the importance of considering cryptic barriers to accurately identify reproductive units, and points to the need for local management of anadromous perch.
4.	Nilsson, Madeleine, et al. (author) Particle shuttling and oxidation capacity of sedimentary organic carbon on the Baltic Sea system scale 2021 In: Marine Chemistry. - : Elsevier BV. - 0304-4203. ; 232 Journal article (peer-reviewed)abstract Continental margin sediments receive most of the particulate organic carbon (POC) deposited on the global seafloor, making them crucial locations in the carbon cycle. However, the complex environments in coastal oceans make it challenging to predict the fate of sedimentary organic carbon (OC) in these areas. Here we use data from 21 sites in the Baltic Sea, representing different biological and physiochemical regimes, to explore controls on sedimentary OC cycling. To this end, we combine in situ measured benthic fluxes of dissolved inorganic carbon (DIC; proxy for OC oxidation) with data on sediment properties. In the Gulf of Bothnia, low sedimentary OC oxidation capacities (yearly DIC flux divided by sedimentary POC inventory) were likely caused by a large fraction of terrestrial material in the POC pool, indicated by low sedimentary chlorophyll a content and high (> 10) carbon:nitrogen ratios. The highest OC oxidation capacities were measured at shallow, permanently oxic sites in the Baltic Proper, where bioturbation likely stimulates OC oxidation. The other sites in the Baltic Proper and all stations in the Gulf of Finland displayed increasing OC oxidation capacities with increasing normalised water depth (station depth divided by maximal depth in the basin). This pattern suggests that substantial quantities of POC are shuttled, through repeated cycles of resuspension-redeposition, from shallow erosion-transport (ET) areas to deep accumulation (A) areas. This interpretation was supported by decreasing sediment age and increasing sedimentary inventories of POC and chlorophyll a with normalised water depth. Our calculations indicate that particle shuttling redistributes almost half of the deposited export production from ET areas to A areas in the Baltic Proper, and that substantial amounts of terrestrial organic material are transported through particle shuttling to the deeper parts of the Gulf of Finland and Gulf of Bothnia. Depositional setting and POC origin can thus be central factors in predicting the distribution and fate of OC in coastal and shelf sediments.
5.	Speliotes, Elizabeth K., et al. (author) Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index 2010 In: Nature Genetics. - : Springer Science and Business Media LLC. - 1061-4036 .- 1546-1718. ; 42:11, s. 937-948 Journal article (peer-reviewed)abstract Obesity is globally prevalent and highly heritable, but its underlying genetic factors remain largely elusive. To identify genetic loci for obesity susceptibility, we examined associations between body mass index and ~2.8 million SNPs in up to 123,865 individuals with targeted follow up of 42 SNPs in up to 125,931 additional individuals. We confirmed 14 known obesity susceptibility loci and identified 18 new loci associated with body mass index (P < 5 × 10−8), one of which includes a copy number variant near GPRC5B. Some loci (at MC4R, POMC, SH2B1 and BDNF) map near key hypothalamic regulators of energy balance, and one of these loci is near GIPR, an incretin receptor. Furthermore, genes in other newly associated loci may provide new insights into human body weight regulation.
6.	Ståhl, H., et al. (author) Factors influencing organic carbon recycling and burial in Skagerrak sediments 2004 In: Journal of Marine Research. - : Journal of Marine Research/Yale. - 0022-2402 .- 1543-9542. ; 62:6, s. 867-907 Journal article (peer-reviewed)abstract Different factors influencing recycling and burial rates of organic carbon (OC) were investigated in the continental margin sediments of the Skagerrak (NE North Sea). Two different areas, one in the southern and one in the northeastern part of the Skagerrak were visited shortly after a spring bloom (March 1999) and in late summer (August 2000). Results suggested that: (1) Organic carbon oxidation rates (C-ox) (2.2-18 mmol Cm-2 d(-1)) were generally larger than the O-2 uptake rates (1.9-25 mmol m(-2) d(-1)). Both rates were measured in situ using a benthic lander. A mean apparent respiration ratio (C-ox:O-2corr) of 1.3 +/- 0.5 was found, indicating some long-term burial of reduced inorganic substances in these sediments. Measured O-2, fluxes increased linearly with increasing C-ox rates during the late summer cruise but not on the, early spring cruise, indicating a temporal uncoupling of anaerobic mineralization and reoxidation of reduced substances. (2) Dissolved organic carbon (DOC) fluxes (0.2-1.0 mmol Cm-2 d(-1)) constituted 3-10% of the C-ox rates and were positively correlated with the latter, implying that net DOC production rates were proportional to the overall sediment OC remineralization rates. (3) Chlorophyll a (Chl-a) concentrations in the sediment were significantly higher in early spring compared to late summer. The measured C-ox rates, but not O-2 fluxes, showed a strong positive correlation with the Chl-a inventories in the top 3 cm of the sediment. (4) Although no relationship was found between the benthic fluxes and the macrofaunal biomass in the chambers, total in situ measured dissolved inorganic carbon (C-T) fluxes were 1-5.4 times higher than diffusive mediated C-T fluxes, indicating that macrofauna have a significant impact on benthic exchange rates of OC remineralization products in Skagerrak sediments. (5) OC burial fluxes were generally higher in northeastern Skagerrak than in the southern part. The same pattern was observed for burial efficiencies, with annual means of similar to62% and similar to43% for the two areas respectively. (6) On a basin-wide scale, there was a significant positive linear correlation between the burial efficiencies and sediment accumulation rates. (7) The calculated particulate organic carbon (POC) deposition, from benthic flux and burial measurements, was only 24-78% of the sediment trap measured POC deposition, indicating a strong near-bottom lateral transport and resuspension of POC. (8) A larger fraction of the laterally advected material of lower quality seemed to settle in the northeastern Skagerrak rather than in the southern Skagerrak. (9) Skagerrak sediments, especially in the northeastern part, act as an efficient net sink for organic carbon, even in a global continental margin context.
7.	Viktorsson, Lena, 1980, et al. (author) Recycling and burial of phosphorus in sediments of an anoxic fjord - The By Fjord, western Sweden 2013 In: Journal of Marine Research. - : Journal of Marine Research/Yale. - 0022-2402 .- 1543-9542. ; 71:5, s. 351-374 Journal article (peer-reviewed)abstract Recycling and burial of sediment phosphorus were studied in the By Fjord, western Sweden, during the years 2009 to 2010 using autonomous benthic landers and sediment sampling. The By Fjord is a small fjord with a shallow sill at its narrow mouth, which limits water exchange of the fjord’s basin water. The water in the basin is exchanged only every 3 to 5 years and the water below sill level is anoxic or sulfidic between water renewals. Five sites were examined in the By Fjord; three shallow sites above the sill level with oxic bottom waters and two deeper sites with anoxic bottom waters. Contents of sediment organic carbon and total nitrogen were higher at deep stations when compared to shallow stations, whereas the contents of sediment inorganic P was higher, and sediment organic P generally lower, at shallow than at deep stations both in surficial and buried sediment. One shallow oxic site and one deep anoxic site were also examined in the adjacent Koljo Fjord having similar characteristics as the By Fjord. In situ measurements of benthic fluxes of dissolved inorganic phosphorus (DIP) showed that the fluxes from sediments with oxic overlying water (0.05–0.23 mmol m−2 d−1) were much lower than fluxes from sediments with anoxic overlying water (1.25–2.26 mmol m−2 d−1). The DIP flux increased with increasing flux of dissolved inorganic carbon (DIC) not only at anoxic but also at oxic bottoms, which is different from observations in brackish water environments. The average ratio between the DIC and DIP fluxes at oxic bottoms was almost 10 times higher than the Redfield C:P ratio indicating partial immobilization of P in oxic sediments. In contrast, the C:P ratio in fluxes was on average 1.5 times lower than Redfield at the anoxic bottoms. The benthic fluxes from anoxic bottoms were P rich not only in relation to C, but also to N. The low C:P flux ratio at anoxic sites coincided with a ≈ 2.5 times higher than Redfield C:P ratio of organic matter in the sediment solid phase clearly suggesting preferential regeneration of P at anoxic bottoms. Burial of inorganic P was higher than organic P burial at both anoxic and oxic sites; the former made up 59 to 60% of the total P burial at the deep anoxic stations, and 80% at the main shallow oxic station. The burial efficiency for organic P at anoxic bottoms was estimated to be only 1 to 3%, which indicates extremely efficient recycling of deposited organic P under anoxic conditions in this fjord environment.
8.	Al-Saffar, Anas K., 1969-, et al. (author) Small intestinal lactulose and sucralose hyper-permeability in inflammatory bowel disease 2018 In: Journal of Crohn's & Colitis. - : OXFORD UNIV PRESS. - 1873-9946 .- 1876-4479. ; 12, s. S124-S124 Journal article (other academic/artistic)
9.	Al-Saffar, Anas, 1969-, et al. (author) Parallel Changes in Harvey-Bradshaw Index, TNFα, and Intestinal Fatty Acid Binding Protein in Response to Infliximab in Crohn’s Disease 2017 In: Gastroenterology Research and Practice. - Egypt : Hindawi Publishing Corporation. - 1687-6121 .- 1687-630X. ; , s. 1-8 Journal article (peer-reviewed)abstract Intestinal fatty acid binding protein (I-FABP) indicates barrier integrity. Aims: determine if I-FABP is elevated in active Crohn's disease (CD) and if I-FABP parallels anti-TNF alpha antibody (infliximab) induced lowering of TNF alpha and Harvey-Bradshaw Index (HBI) as potential indicator of mucosal healing. I-FABP distribution along human gut was determined. Serum from 10 CD patients collected during first three consecutive infliximab treatments with matched pretreatment and follow-up samples one week after each treatment and corresponding HBI data were analyzed. I-FABP reference interval was established from 31 healthy subjects with normal gut permeability. I-FABP and TNF alpha were measured by ELISA; CRP was measured by nephelometry. Healthy tissue was used for I-FABP immunohistochemistry. Pretreatment CD patient TNF alpha was 1.6-fold higher than in-house reference interval, while I-FABP was 2.5-fold higher, which lowered at follow-ups. Combining all 30 infusion/follow-up pairs also revealed changes in I-FABP. HBI followed this pattern; CRP declined gradually. I-FABP was expressed in epithelium of stomach, jejunum, ileum, and colon, with the highest expression in jejunum and ileum. I-FABP is elevated in active CD with a magnitude comparable to TNF alpha. Parallel infliximab effects on TNF alpha, HBI, and I-FABP were found. I-FABP may be useful as an intestine selective prognostic marker in CD.
10.	Almroth, Elin, 1977, et al. (author) Effects of resuspension on benthic fluxes of oxygen, nutrients, dissolved inorganic carbon, iron and manganese in the Gulf of Finland, Baltic Sea 2009 In: Continental Shelf Research. - : Elsevier BV. - 0278-4343. ; 29, s. 807-818 Journal article (peer-reviewed)abstract The effect of resuspension on benthic fluxes of oxygen (O2), ammonium (NH4+), nitrate (NO3−), phosphate (PO43−), silicate (Si(OH)4), dissolved inorganic carbon (DIC), total dissolved iron (Fe) and total dissolved manganese (Mn) was studied at three different stations in the Gulf of Finland (GoF), Baltic Sea during three cruises in June–July 2003, September 2004 and May 2005. The stations were situated on different bottom types in the western, central and eastern part, respectively, of the open GoF. The fluxes were measured in-situ using the autonomous Göteborg benthic lander. To simulate resuspension events, the stirring speed was increased in two of the four chambers of the lander after approximately half of the incubation time. The other two chambers were used as control chambers. Clear effects of resuspension were observed on the oxygen fluxes where an increase of the consumption was observed in 88% of the cases and on average with 59% (stdev=53). The NH4+ fluxes were affected in 50% of the cases (4 out of 8 incubations) at stations with low bottom water oxygen concentrations, but in no cases where the bottom water was oxygenated (0 out of 9 incubations). The NH4+ fluxes decreased by 26±27% in 2005 and by 114±19% in 2003. There was no clear effect of resuspension on the fluxes of any of the other solutes in this study. Thus, resuspension events did not play a significant role in release/uptake of NO3−, PO43−, Si(OH)4, DIC, Fe and Mn in GoF sediments. However, increased oxygen consumption as a result of resuspension may lead to spreading of anoxic/suboxic bottom water conditions, and thus indirectly to increased benthic release of phosphate, ammonium and iron.
11.	Almroth Rosell, Elin, 1977, et al. (author) A new approach to model oxygen dependent benthic phosphate fluxes in the Baltic Sea 2015 In: Journal of Marine Systems. - : Elsevier BV. - 0924-7963 .- 1879-1573. ; 144, s. 127-141 Journal article (peer-reviewed)abstract The new approach to model the oxygen dependent phosphate release by implementing formulations of the oxygen penetration depths (OPD) and mineral bound inorganic phosphorus pools to the Swedish Coastal and Ocean Biogeochemical model (SCOBI) is described. The phosphorus dynamics and the oxygen concentrations in the Baltic proper sediment are studied during the period 1980-2008 using SCOBI coupled to the 3D-Rossby Centre Ocean model. Model data are compared to observations from monitoring stations and experiments. The impact from oxygen consumption on the determination of the OPD is found to be largest in the coastal zones where also the largest OPD are found. In the deep water the low oxygen concentrations mainly determine the OPD. Highest modelled release rate of phosphate from the sediment is about 59 x 10(3) t P year(-1) and is found on anoxic sediment at depths between 60-150 m, corresponding to 17% of the Baltic proper total area. The deposition of organic and inorganic phosphorus on sediments with oxic bottom water is larger than the release of phosphorus, about 43 x 10(3) t P year(-1). For anoxic bottoms the release of total phosphorus during the investigated period is larger than the deposition, about 19 x 10(3) t P year(-1). In total the net Baltic proper sediment sink is about 23.7 x 10(3) t P year(-1). The estimated phosphorus sink efficiency of the entire Baltic Sea is on average about 83% during the period.
12.	Almroth Rosell, Elin, 1977, et al. (author) Effects of simulated natural and massive resuspension on benthic oxygen, nutrient and dissolved inorganic carbon fluxes in Loch Creran, Scotland 2012 In: Journal of Sea Research. - : Elsevier BV. - 1385-1101. ; 72, s. 38-48 Journal article (peer-reviewed)abstract The effect of repeated natural resuspension on benthic oxygen consumption and the effect of natural and massive resuspension on oxygen consumption and fluxes of phosphate, silicate, ammonium and dissolved inorganic carbon (DIC) were studied at two stations (S1 and S2) in a Scottish sea loch. Station S11 had organically enriched sediment and station S1 had lower organic content in the sediment. The fluxes were measured in situ using the Göteborg benthic lander. Natural resuspension, simulating resuspension events due to strong wind, waves or currents, and massive resuspension, simulating resuspension due to e.g. trawling or dredging, were created inside the incubation chambers by regulating the stirring of the incubated overlying water or by retracting and shaking the incubated sediment. Natural resuspension showed clear effects on the oxygen consumption at station S11, where it increased with an average of 12.8 (standard error (s.e.) 0.17) and 7.7 (s.e. 0.12) mmol m− 2 d− 1 during the first and second incubations, respectively. At station S1 there was no clear effect of natural resuspension on the oxygen consumption. Massive resuspension increased the oxygen consumption on S1 with an average of 608 (standard deviation (sd) 366) mmol m− 2 d− 1 and on S11 with an average of 2396 (sd 2265) mmol m− 2 d− 1. The fluxes of ammonium, phosphate and silicate were affected by the massive resuspension in 50, 14 and 33% of the chambers, respectively, on station S11. However, in the majority of the cases there were no effects on the nutrient and DIC fluxes of massive resuspension. The absolute concentrations of DIC, ammonium and silicate did however instantly increase with an average of 419 (sd 297), 48 (sd 27) and 6.9 (sd 3.7) μM, respectively, at S11 upon massive resuspension. The concentrations of phosphate decreased instantly with an average of 0.2 (sd 0.1) μM. On station S1 there were effects only on the ammonium and silicate concentrations, which increased with 0.8 (sd 0.3) and 1.13 (sd 0.36) μM, respectively. The large increase in oxygen consumption due to massive resuspension indicates that activities like e.g. trawling and dredging that take place in areas where water exchange occurs infrequently may lead to oxygen depletion in bottom water, which in turn might affect the ecological balance. Silicate, ammonium and DIC can be released due to massive resuspension and contribute to increased algal blooms in surface waters.
13.	Almroth Rosell, Elin, 1977, et al. (author) Transport of fresh and resuspended particulate organic material in the Baltic Sea — a model study 2011 In: Journal of Marine Systems. - : Elsevier BV. - 0924-7963. ; 87:1, s. 1-12 Journal article (peer-reviewed)abstract A fully coupled high-resolution 3-dimensional biogeochemical–physical ocean model including an empirical wave model was used to investigate the long-term average (1970–2007) distributions and transports of resuspended matter and other types of suspended organic matter in the Baltic Sea. Modelled bottom types were compared to observations and the results showed that the model successfully managed to capture the horizontal, as well as the vertical, distribution of the different bottom types: accumulation, transport and erosion bottoms. The model also captured well the nutrient element contents in the sediments. On average the largest contribution of resuspended organic carbon to the transport of total organic carbon is found at erosion and transport bottoms. Although the relative transport of resuspended organic carbon at deeper accumulation bottoms in general is low (< 10% of total), the central parts of the sub-basins act on average as sinks that import organic matter while the more shallow areas and the coastal regions acts as sources of organic carbon in the water column. This indicates that the particulate organic matter produced in erosion and transport areas might be kept in suspension long enough to be transported and settle in less energetic areas, i.e. on accumulation bottoms.
14.	Atamanchuk, Dariia, 1987, et al. (author) Continuous long-term observations of the carbonate system dynamics in the water column of a temperate fjord 2015 In: Journal of Marine Systems. - : Elsevier BV. - 0924-7963. ; 148, s. 272-284 Journal article (peer-reviewed)abstract A cabled underwater observatory with more than 30 sensors delivering data in real-time was used to study the dynamics of the upper pelagic carbonate system of the Koljo Fjord, western Sweden, from September to April during two consecutive years (2011-2012 and 2012-2013). In the dynamic upper ca 15 m of the water column, salinity and temperature varied by up to 10 and 20 degrees C throughout the recorded periods, respectively. Partial pressure of CO2 (pCO(2)), measured with newly developed optical sensors (optodes) at three water depths (5, 9.6 and 12.6 m), varied between 210-940 mu atm, while O-2 varied between 80-470 mu mol/L. Redfield scaled graphs (Delta O-2:Delta DIC = -1.30), in which DIC was derived from pH or pCO(2) and salinity-derived alkalinity (A(Tsal)), and oxygen was measured by the sensors, were used as a tool to assess timing and occurrence of different processes influencing the dynamics of these parameters. Distinctive short-term variations of pCO(2) and O-2 were induced by either tidal oscillations, wind-driven water mass transport in the mixed layer or occasional transport of deep-basin water from below the thermo/halodine to the surface layer. Intensified air-sea gas exchange during short storm events was usually followed by stabilization of gas-related parameters in the water column, such as O-2 concentration and pCO(2), on longer time-scales characteristic for each parameter. Biological processes including organic matter degradation in late summer/autumn and primary production in early spring were responsible for slower and gradual seasonal changes of pCO(2) and O-2. Net primary production (NPP) rates in the Koljo Fjord were quantified to be 1.79 and 2.10 g C m(-2) during the spring bloom periods in 2012 and 2013, respectively, and ratios of 02 production:DIC consumption during the same periods were estimated to be -1.21 +/- 0.02 (at 5 m depth in 2013), -1.51 +/- 0.02 (at 12.6 m in 2012) and -1.95 +/- 0.05 (at 9.6 m in 2013). These ratios are discussed and compared to previously reported 02:C ratios during primary production. (C) 2015 Elsevier B.V. All rights reserved.
15.	Atamanchuk, Dariia, 1987, et al. (author) Detection of CO2 leakage from a simulated sub-seabed storage site using three different types of pCO2 sensors 2015 In: International Journal of Greenhouse Gas Control. - : Elsevier BV. - 1750-5836. ; 38, s. 121-134 Journal article (peer-reviewed)abstract This work is focused on results from a recent controlled sub-seabed in situ carbon dioxide (CO2) releaseexperiment carried out during May–October 2012 in Ardmucknish Bay on the Scottish west coast. Threetypes of pCO2sensors (fluorescence, NDIR and ISFET-based technologies) were used in combination withmultiparameter instruments measuring oxygen, temperature, salinity and currents in the water columnat the epicentre of release and further away. It was shown that distribution of seafloor CO2 emissionsfeatures high spatial and temporal heterogeneity. The highest pCO2values (∼1250 atm) were detectedat low tide around a bubble stream and within centimetres distance from the seafloor. Further up in thewater column, 30–100 cm above the seabed, the gradients decreased, but continued to indicate elevatedpCO2at the epicentre of release throughout the injection campaign with the peak values between 400and 740atm. High-frequency parallel measurements from two instruments placed within 1 m fromeach other, relocation of one of the instruments at the release site and 2D horizontal mapping of therelease and control sites confirmed a localized impact from CO2emissions. Observed effects on the watercolumn were temporary and post-injection recovery took <7 days.A multivariate statistical approach was used to recognize the periods when the system was dominatedby natural forcing with strong correlation between variation in pCO2and O2, and when it was influencedby purposefully released CO2.Use of a hydrodynamic circulation model, calibrated with in situ data, was crucial to establishingbackground conditions in this complex and dynamic shallow water system.
16.	Atamanchuk, Dariia, 1987, et al. (author) Performance of a lifetime-based optode for measuring partial pressure of carbon dioxide in natural waters 2014 In: Limnology and Oceanography : Methods. - : Wiley. - 1541-5856. ; 12, s. 63-73 Journal article (peer-reviewed)abstract This article reports the performance of an improved, newly developed, compact, low power, lifetime-based optical sensor (optode) for measuring partial pressure of dissolved CO2 gas (pCO2) in natural waters. The results suggest that after preconditioning, these sensors are stable in water for time periods longer than 7 months. The wide dynamic range of about 0-50000 μatm opens possibilities for numerous applications of which some are presented. In normal marine environments with pCO2 levels of 200-1000 μatm, the best-obtained precision was about ±2 μatm, and the absolute accuracy was between 2-75 μatm, depending on the deployment and the quality of the collected reference water samples. One limitation is that these sensors will become irreversibly poisoned by H2S and should thus not be deployed in sulphidic environments.
17.	Best, Mairi, et al. (author) EMSO: A distributed infrastructure for addressing geohazards and global ocean change 2014 In: Oceanography. - : The Oceanography Society. - 1042-8275. ; 27:2, s. 167-169 Journal article (peer-reviewed)abstract The European Multidisciplinary Seafloor and water-column Observatory (EMSO; http://www.emso-eu.org) is addressing the next challenge in Earth-ocean science: how to coordinate data acquisition, analysis, archiving, access, and response to geohazards across provincial, national, regional, and international boundaries. Such coordination is needed to optimize the use of current and planned ocean observatory systems to (1) address national and regional public safety concerns about geohazards (e.g., earthquakes, submarine landslides, tsunamis) and (2) permit broadening of their scope toward monitoring environmental change on global ocean scales.
18.	Best, Mairi M. R., et al. (author) The EMSO-ERIC Pan-European Consortium: Data Benefits and Lessons Learned as the Legal Entity Forms 2016 In: Marine Technology Society journal. - 0025-3324. ; 50:3, s. 8-15 Journal article (peer-reviewed)abstract The European Multidisciplinary Seafloor and water-column Observatory (EMSO) European Research Infrastructure Consortium (ERIC) provides power, communications, sensors, and data infrastructure for continuous, high-resolution, (near-)real-time, interactive ocean observations across a multidisciplinary and interdisciplinary range of research areas including biology, geology, chemistry, physics, engineering, and computer science, from polar to subtropical environments, through the water column down to the abyss. Eleven deep-sea and four shallow nodes span from the Arctic through the Atlantic and Mediterranean, to the Black Sea. Coordination among the consortium nodes is being strengthened through the EMSOdev project (H2020), which will produce the EMSO Generic Instrument Module (EGIM). Early installations are now being upgraded, for example, at the Ligurian, Ionian, Azores, and Porcupine Abyssal Plain (PAP) nodes. Significant findings have been flowing in over the years; for example, high-frequency surface and subsurface water-column measurements of the PAP node show an increase in seawater pCO2 (from 339 μatm in 2003 to 353 μatm in 2011) with little variability in the mean air-sea CO2 flux. In the Central Eastern Atlantic, the Oceanic Platform of the Canary Islands open-ocean canary node (aka ESTOC station) has a long-standing time series on water column physical, biogeochemical, and acidification processes that have contributed to the assessment efforts of the Intergovernmental Panel on Climate Change (IPCC). EMSO not only brings together countries and disciplines but also allows the pooling of resources and coordination to assemble harmonized data into a comprehensive regional ocean picture, which will then be made available to researchers and stakeholders worldwide on an open and interoperable access basis.
19.	Blomqvist, Sven, et al. (author) Long overdue improvement of box corer sampling 2015 In: Marine Ecology Progress Series. - : Inter-Research Science Center. - 0171-8630 .- 1616-1599. ; 538, s. 13-21 Journal article (peer-reviewed)abstract An improved, large double-jawed box corer, intended primarily for sampling of soft sediments on continental margins and in large lakes, is described. The device performs reliably when entering the sediment and enclosing the sample, during withdrawal and hoisting on board the ship and also when detaching the collected sediment sample. It offers the following advantages: (1) robust design, (2) minimally impeded flow of water through the box chamber during lowering and (3) an efficient closure mechanism. It is furnished with a supporting stand, a transparent liner and an accessory anti-slosh baffle for insertion in the liner as the corer is set down on the ship's deck. In situ video records and turbidity measurements from field trials, as well as visual inspection of the core and supernatant water after retrieval, show that the device collects minimally disturbed sediment when properly and carefully operated. This contrasts with the bulky United States Naval Electronics Laboratory (USNEL) Spade Corer in which water flow through the box chamber during lowering is impeded, causing a bow-wave ahead of the corer that displaces surficial sediment. In addition, the USNEL's single-spade closing mechanism deforms the sediment sample severely and can even cause loss of sediment. Our new box corer performs much better, making it suitable for quantitative benthic sampling.
20.	Bonaglia, Stefano, 1983, et al. (author) High methane emissions from an anoxic fjord driven by mixing and oxygenation : High methane emissions from fjords 2022 In: Limnology and Oceanography Letters. - : Wiley. - 2378-2242. ; 7:5, s. 392-400 Journal article (peer-reviewed)abstract Oceanic methane (CH4) budgets lack data from high-latitude fjords that often behave as intermittently anoxic ecosystems with potentially high methane emissions. We conducted 15 expeditions and 49 in situ lander deployments in an anoxic Scandinavian fjord between 2009 and 2021. Benthic fluxes were highest at the deepest anoxic site (average 516μmol CH4 m−2 d−1), supporting bottom water methane exceeding 5000nM. Natural and engineered mixing events displaced methane-rich bottom waters, enhancing upper water concentrations and driving high sea–air flux reaching 641μmol CH4 m−2 d−1. Mixing also reduced pelagic methane oxidation from 70% to 20% of all methane sources into the fjord. Upscaling of literature fluxes combined with our results suggests that fjords globally emit 1.0±0.8 Tg CH4 yr−1. Despite their small global area, fjords are hotspots of methane release. We suggest that ongoing deoxygenation and global change will enhance methane emissions from fjords.
21.	Bonaglia, Stefano, et al. (author) Sulfide oxidation in deep Baltic Sea sediments upon oxygenation and colonization by macrofauna 2019 In: Marine Biology. - : Springer Science and Business Media LLC. - 0025-3162 .- 1432-1793. ; 166 Journal article (peer-reviewed)abstract Coastal and shelf sediments affected by transient or long-term bottom water anoxia and sulfidic conditions undergo drastic changes in macrofauna communities and abundances. This study investigates how early colonization by two macrofaunal functional traits (epifauna vs. infauna) affects oxygen, sulfide, and pH dynamics in anoxic sediment upon recent bottom water oxygenation. Large mesocosms (area 900 cm(2)) with 150-m-deep Baltic Sea soft sediments were exposed to three treatments: (1) no animals; (2) addition of 170 polychaetes (Marenzelleria arctia); (3) addition of 181 amphipods (Monoporeia affinis). Porewater chemistry was investigated repeatedly by microsensor profiling over a period of 65 days. Colonization by macrofauna did not significantly deepen penetration of oxygen compared to the animal-free sediment. Bioturbation by M. affinis increased the volume of the oxidized, sulfide-free sediment by 66% compared to the animal-free control already after 13 days of incubation. By the end of the experiment M. affinis and M. arctia increased the oxidized sediment volume by 87 and 35%, respectively. Higher efficiency of epifaunal amphipods in removing hydrogen sulfide than deep-burrowing polychaetes is likely due to more substantial re-oxidation of manganese and/or nitrogen compounds associated with amphipod mixing activity. Our results thus indicate that early colonization of different functional groups might have important implications for the later colonization by benthic macrofauna, meiofauna and microbial communities that benefit from oxidized and sulfide-free sediments.
22.	Broman, Elias, 1985-, et al. (author) Cyanophage Diversity and Community Structure in Dead Zone Sediments 2021 In: mSphere. - : American Society for Microbiology. - 2379-5042. ; 6:2 Journal article (peer-reviewed)abstract Up to 20% of prokaryotic organisms in the oceans are estimated to die every day due to viral infection and lysis. Viruses can therefore alter microbial diversity, community structure, and biogeochemical processes driven by these organisms. Cyanophages are viruses that infect and lyse cyanobacterial cells, adding bioavailable carbon and nutrients into the environment. Cyanobacteria are photosynthesizing bacteria, with some species capable of N-2 fixation, which are known to form large blooms as well as resistant resting cells known as akinetes. Here, we investigated cyanophage diversity and community structure plus cyanobacteria in dead zone sediments. We sampled surface sediments and sequenced DNA and RNA, along an oxygen gradient-representing oxic, hypoxic, and anoxic conditions-in one of the world's largest dead zones located in the Baltic Sea. Cyanophages were detected at all stations and, based on partial genome contigs, had a higher alpha diversity and different beta diversity in the hypoxic-anoxic sediments, suggesting that cyanobacteria in dead zone sediments and/or environmental conditions select for specific cyanophages. Some of these cyanophages can infect cyanobacteria with potential consequences for gene expression related to their photosystem and phosphate regulation. Top cyanobacterial genera detected in the anoxic sediment included Dolichospermum/Anabaena, Synechococcus, and Cyanobium. RNA transcripts classified to cyanobacteria were associated with numerous pathways, including anaerobic carbon metabolism and N-2 fixation. Cyanobacterial blooms are known to fuel oxygen-depleted ecosystems with phosphorus (so-called internal loading), and our cyanophage data indicate the potential for viral lysis of cyanobacteria which might explain the high nutrient turnover in these environments. IMPORTANCE Cyanophages are viruses that target cyanobacteria and directly control their abundance via viral lysis. Cyanobacteria are known to cause large blooms in water bodies, substantially contributing to oxygen depletion in bottom waters resulting in areas called dead zones. Our knowledge of cyanophages in dead zones is very scarce, and so far, no studies have assembled partial cyanophage genomes and investigated their associated cyanobacteria in these dark and anoxic sediments. Here, we present the first study using DNA and RNA sequencing to investigate in situ diversity of cyanophages and cyanobacteria in dead zones. Our study shows that dead zone sediments contain different cyanophages compared to oxic sediments and suggest that these viruses are able to affect cyanobacterial photosystem and phosphate regulation. Furthermore, cyanophage-controlled lysis of cyanobacteria might also increase the turnover of carbon, phosphorus, and nitrogen in these oxygen-free environments at the bottom of the sea.
23.	Broman, Elias, et al. (author) Uncovering diversity and metabolic spectrum of animals in dead zone sediments 2020 In: Communications Biology. - : Springer Science and Business Media LLC. - 2399-3642. ; 3, s. 1-12 Journal article (peer-reviewed)abstract Ocean deoxygenation driven by global warming and eutrophication is a primary concern for marine life. Resistant animals may be present in dead zone sediments, however there is lack of information on their diversity and metabolism. Here we combined geochemistry, microscopy, and RNA-seq for estimating taxonomy and functionality of micrometazoans along an oxygen gradient in the largest dead zone in the world. Nematodes are metabolically active at oxygen concentrations below 1.8μmolL−1, and their diversity and community structure are different between low oxygen areas. This is likely due to toxic hydrogen sulfide and its potential to be oxidized by oxygen or nitrate. Zooplankton resting stages dominate the metazoan community, and these populations possibly use cytochrome c oxidase as an oxygen sensor to exit dormancy. Our study sheds light on mechanisms of animal adaptation to extreme environments. These biological resources can be essential for recolonization of dead zones when oxygen conditions improve.
24.	Brunnegård, Jenny, 1973, et al. (author) Nitrogen cycling in deep-sea sediments of the Porcupine Abyssal Plain, NE Atlantic 2004 In: Progress in Oceanography. - : Elsevier BV. - 0079-6611. ; 63:4, s. 159-181 Journal article (peer-reviewed)abstract Rates of transformation, recycling and burial of nitrogen and their temporal and spatial variability were investigated in deep-sea sediments of the Porcupine Abyssal Plain (PAP), NE Atlantic during eight cruises from 1996 to 2000. Benthic fluxes of ammonium (NH4) and nitrate (NO3) were measured in situ using a benthic lander. Fluxes of dissolved organic nitrogen (DON) and denitrification rates were calculated from pore water profiles of DON and NO3, respectively. Burial of nitrogen was calculated from down core profiles of nitrogen in the solid phase together with C-14-based sediment accumulation rates and dry bulk density. Average NH4 and NO3-effluxes were 7.4 +/- 19 mumol m(-2) d(-1) (n = 7) and 52 +/- 30 mumol m(-2) d(-1) (n = 14), respectively, during the period 1996-2000. During the same period, the DON-flux was 11 +/- 5.6 mumol m(-2) d(-1) (n = 5) and the denitrification rate was 5.1 +/- 3.0 mumol m(-2) d(-1) (n = 22). Temporal and spatial variations were only found in the benthic NO3 fluxes. The average burial rate was 4.6 +/- 0.9 mumol m(-2) d(-1). On average over the sampling period, the recycling efficiency of the PON input to the sediment was similar to94% and the burial efficiency hence similar to6%. The DON flux constituted similar to14% of the nitrogen recycled, and it was of similar magnitude as the sum of burial and denitrification. By assuming the PAP is representative of all deep-sea areas, rates of denitrification, burial and DON efflux were extrapolated to the total area of the deep-sea floor (>2000 m) and integrated values of denitrification and burial of 8 +/- 5 and 7 +/- 1 Tg N year(-1), respectively, were obtained. This value of total deep-sea sediment denitrification corresponds to 3-12% of the global ocean benthic denitrification. Burial in deep-sea sediments makes up at least 25% of the global ocean nitrogen burial. The integrated DON flux from the deep-sea floor is comparable in magnitude to a reported global riverine input of DON suggesting that deep-sea sediments constitute an important source of DON to the world ocean. (C) 2004 Elsevier Ltd. All rights reserved.
25.	Capo, Eric, et al. (author) Oxygen-deficient water zones in the Baltic Sea promote uncharacterized Hg methylating microorganisms in underlying sediments 2022 In: Limnology and Oceanography. - : Wiley. - 1939-5590 .- 0024-3590. ; 67:1, s. 135-146 Journal article (peer-reviewed)abstract Human-induced expansion of oxygen-deficient zones can have dramatic impacts on marine systems and its resident biota. One example is the formation of the potent neurotoxic methylmercury (MeHg) that is mediated by microbial methylation of inorganic divalent Hg (HgII) under oxygen-deficient conditions. A negative consequence of the expansion of oxygen-deficient zones could be an increase in MeHg production due to shifts in microbial communities in favor of microorganisms methylating Hg. There is, however, limited knowledge about Hg-methylating microbes, i.e., those carrying hgc genes critical for mediating the process, from marine sediments. Here, we aim to study the presence of hgc genes and transcripts in metagenomes and metatranscriptomes from four surface sediments with contrasting concentrations of oxygen and sulfide in the Baltic Sea. We show that potential Hg methylators differed among sediments depending on redox conditions. Sediments with an oxygenated surface featured hgc-like genes and transcripts predominantly associated with uncultured Desulfobacterota (OalgD group) and Desulfobacterales (including Desulfobacula sp.) while sediments with a hypoxic-anoxic surface included hgc-carrying Verrucomicrobia, unclassified Desulfobacterales, Desulfatiglandales, and uncharacterized microbes. Our data suggest that the expansion of oxygen-deficient zones in marine systems may lead to a compositional change of Hg-methylating microbial groups in the sediments, where Hg methylators whose metabolism and biology have not yet been characterized will be promoted and expand.

Skapa referenser, mejla, bekava och länka

Permalink

Träfflista för sökning "WFRF:(Hall Per 1954) "

Refine your search

Year