| 1. |
- Davies, Thomas G., et al.
(author)
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Open data and digital morphology.
- 2017
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In: Proceedings of the Royal Society of London. Biological Sciences. - : The Royal Society. - 0962-8452 .- 1471-2954. ; 284:1852, s. 1-10
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Journal article (peer-reviewed)abstract
- Over the past two decades, the development of methods for visualizing and analysing specimens digitally, in three and even four dimensions, has transformed the study of living and fossil organisms. However, the initial promise that the widespread application of such methods would facilitate access to the underlying digital data has not been fully achieved. The underlying datasets for many published studies are not readily or freely available, introducing a barrier to verification and reproducibility, and the reuse of data. There is no current agreement or policy on the amount and type of data that should be made available alongside studies that use, and in some cases are wholly reliant on, digital morphology. Here, we propose a set of recommendations for minimum standards and additional best practice for three-dimensional digital data publication, and review the issues around data storage, management and accessibility.
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| 2. |
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| 3. |
- Brodowski, W, et al.
(author)
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Exclusive measurement of pp -> pp pi(+)pi(-) at CELSIUS
- 2000
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In: ACTA PHYSICA POLONICA B. - : ACTA PHYSICA POLONICA B, JAGELLONIAN UNIV, INST PHYSICS. - 0587-4254. ; 31:10-11, s. 2295-2298
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Journal article (peer-reviewed)abstract
- With the PROMICE/WASA detector setup at CELSIUS the reaction pp --> NN pi pi has been measured in the energy range from 650 to 775 MeV. These data constitute the first exclusive high-statistics measurements on a pure hydrogen target, supplying both differ
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| 4. |
- Calen, H, et al.
(author)
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Threshold structure of the quasifree p+n -> d+eta reaction
- 1998
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In: PHYSICAL REVIEW LETTERS. - : AMERICAN PHYSICAL SOC. - 0031-9007. ; 80:10, s. 2069-2072
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Journal article (peer-reviewed)abstract
- The quasifree p + n --> d + eta reaction cross section has been measured at the threshold using 1295 MeV protons in the CELSIUS storage ring and an internal cluster-jet deuterium target. The kinematics is chosen such that the target proton can be assumed
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| 5. |
- Greiff, J, et al.
(author)
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Pion production in dp -> dN pi reactions with deuteron projectiles - art. no. 064002
- 2000
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In: PHYSICAL REVIEW C. - : AMERICAN PHYSICAL SOC. - 0556-2813. ; 6206:6, s. 4002-
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Journal article (peer-reviewed)abstract
- Kinematically complete events have been studied for the reactions dp-->dp pi (0) and dp-->dn pi (+) at projectile energies between 437 and 559 MeV. The measurement covers a range of pion momenta eta =p(pi ,c.m.)(max)/m(pi)c from near the production thresh
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| 6. |
- Thunes, KH, et al.
(author)
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The arthropod community of Scots pine (Pinus sylvestris L.) canopies in Norway
- 2004
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In: Entomologica Fennica. - 0785-8760. ; 15:2, s. 65-90
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Research review (peer-reviewed)abstract
- We summarise the findings of arthropods collected by fogging the canopy of 24 pine trees in two sites in Eastern and Western Norway. From the samples, taken in 1998 and in 1999, almost 30,000 specimens were determined to 512 species, with Diptera being most species rich (210 species), followed by Coleoptera (76 species) and Araneae (49 species). Of the 96 new species records, nine were new to science (5 Diptera and 4 Oribatida), two were new to the European, three to the Scandinavian and 82 to the Norwegian faunas. The paper demonstrates the need for detailed faunistical inventories of European forests.
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| 7. |
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| 8. |
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| 9. |
- Bilger, R, et al.
(author)
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2 pi production in pp collisions close to threshold
- 2000
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In: NUCLEAR PHYSICS A. - : ELSEVIER SCIENCE BV. ; , s. 469C-472C
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Conference paper (peer-reviewed)abstract
- The reaction pp --> NN pi pi has been measured close to threshold in the energy range from 650 to 775 MeV using the PROMICE/WASA setup at CELSIUS. These data constitute the first exclusive high-statistics measurements of this reaction on a pure hydrogen t
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| 10. |
- Bilger, R, et al.
(author)
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Cross sections of the pp -> pp pi(0) reaction between 310 and 425 MeV
- 2001
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In: NUCLEAR PHYSICS A. - : ELSEVIER SCIENCE BV. - 0375-9474. ; 693:3-4, s. 633-662
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Journal article (peer-reviewed)abstract
- Extensive kinematically complete measurements of the pp --> pp pi (0) reaction have been made at six beam energies: 310, 320, 340, 360, 400, and 425 MeV. Angles and energies of both final-state protons are extracted from the forward detector system of the
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| 11. |
- Bilger, R, et al.
(author)
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Spectator tagging in quasi-free pn-reactions on deuterium at PROMICE/WASA, CELSIUS
- 2000
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In: Nuclear Physics A. - : Elsevier Science B.V. Holland. ; , s. 1053c-1056c
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Conference paper (peer-reviewed)abstract
- A set of silicon detectors has been added to the PROMICE/WASA (P/W) experiment at CELSIUS. These detectors have been used for spectator-proton tagging in proton deuteron collisions to investigate proton-neutron reactions at intermediate energies. The perf
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| 12. |
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| 13. |
- Bilger, R, et al.
(author)
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Two-pion production in proton-proton collisions near threshold at Celsius
- 1998
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In: ACTA PHYSICA POLONICA B. - : ACTA PHYSICA POLONICA B, JAGELLONIAN UNIV, INST PHYSICS. ; , s. 2987-2991
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Conference paper (peer-reviewed)abstract
- Two-pion production reactions in proton-proton collisions near threshold are measured using an internal cluster-jet hydrogen target and the WASA/PROMICE detector at the CELSIUS storage ring. Four out of the five possible two-pion production reactions are
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| 14. |
- Bonaca, M. P., et al.
(author)
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Reduction in subtypes and sizes of myocardial infarction with ticagrelor in PEGASUS-TIMI 54
- 2018
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In: Journal of the American Heart Association. - 2047-9980. ; 7:22
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Journal article (peer-reviewed)abstract
- Background-—Ticagrelor reduced cardiovascular death, myocardial infarction (MI), or stroke in patients with prior MI in PEGASUSTIMI 54 (Prevention of Cardiovascular Events [eg, Death From Heart or Vascular Disease, Heart Attack, or Stroke] in Patients With Prior Heart Attack Using Ticagrelor Compared to Placebo on a Background of Aspirin). MI can occur in diverse settings and with varying severity; therefore, understanding the types and sizes of MI events prevented is of clinical importance. Methods and Results-—MIs were adjudicated by a blinded clinical events committee and categorized by subtype and fold elevation of peak cardiac troponin over the upper limit of normal. A total of 1042 MIs occurred in 898 of the 21 162 randomized patients over a median follow-up of 33 months. The majority of the MIs (76%) were spontaneous (Type 1), with demand MI (Type 2) and stent thrombosis (Type 4b) accounting for 13% and 9%, respectively; sudden death (Type 3), percutaneous coronary intervention–related (Type 4a) and coronary artery bypass graft–related (Type 5) each accounted for <1%. Half of MIs (520, 50%) had a peak troponin ≥10x upper limit of normal and 21% of MIs (220) had a peak troponin ≥1009 upper limit of normal. A total of 21% (224) were ST-segment–elevation MI STEMI. Overall ticagrelor reduced MI (4.47% versus 5.25%, hazard ratio 0.83, 95% confidence interval 0.72–0.95, P=0.0055). The benefit was consistent among the subtypes, including a 31% reduction in MIs with a peak troponin ≥1009 upper limit of normal (hazard ratio 0.69, 95% confidence interval 0.53–0.92, P=0.0096) and a 40% reduction in ST-segment elevation MI (hazard ratio 0.60, 95% confidence interval 0.46–0.78, P=0.0002). Conclusions-—In stable outpatients with prior MI, the majority of recurrent MIs are spontaneous and associated with a high biomarker elevation. Ticagrelor reduces the MI consistently among subtypes and sizes including large MIs and ST-segment elevation MI. Clinical Trial Registration-URL: https://www.clinicaltrials.gov. Unique identifier: NCT01225562. © 2018 The Authors.
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| 15. |
- Olson, Nathan D., et al.
(author)
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precisionFDA Truth Challenge V2: Calling variants from short- and long-reads in difficult-to-map regions
- 2020
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Other publication (other academic/artistic)abstract
- The precisionFDA Truth Challenge V2 aimed to assess the state-of-the-art of variant calling in difficult-to-map regions and the Major Histocompatibility Complex (MHC). Starting with FASTQ files, 20 challenge participants applied their variant calling pipelines and submitted 64 variant callsets for one or more sequencing technologies (~35X Illumina, ~35X PacBio HiFi, and ~50X Oxford Nanopore Technologies). Submissions were evaluated following best practices for benchmarking small variants with the new GIAB benchmark sets and genome stratifications. Challenge submissions included a number of innovative methods for all three technologies, with graph-based and machine-learning methods scoring best for short-read and long-read datasets, respectively. New methods out-performed the 2016 Truth Challenge winners, and new machine-learning approaches combining multiple sequencing technologies performed particularly well. Recent developments in sequencing and variant calling have enabled benchmarking variants in challenging genomic regions, paving the way for the identification of previously unknown clinically relevant variants.
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| 16. |
- Olson, Nathan D., et al.
(author)
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PrecisionFDA Truth Challenge V2: Calling variants from short and long reads in difficult-to-map regions
- 2022
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In: Cell Genomics. - : Elsevier BV. - 2666-979X. ; 2:5, s. 1-12
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Journal article (peer-reviewed)abstract
- The precisionFDA Truth Challenge V2 aimed to assess the state of the art of variant calling in challenging genomic regions. Starting with FASTQs, 20 challenge participants applied their variant-calling pipelines and submitted 64 variant call sets for one or more sequencing technologies (Illumina, PacBio HiFi, and Oxford Nanopore Technologies). Submissions were evaluated following best practices for benchmarking small variants with updated Genome in a Bottle benchmark sets and genome stratifications. Challenge submissions included numerous innovative methods, with graph-based and machine learning methods scoring best for short-read and long-read datasets, respectively. With machine learning approaches, combining multiple sequencing technologies performed particularly well. Recent developments in sequencing and variant calling have enabled benchmarking variants in challenging genomic regions, paving the way for the identification of previously unknown clinically relevant variants.
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| 17. |
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| 18. |
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| 19. |
- Zlomanczuk, J, et al.
(author)
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Differential cross sections of the pp -> pp pi(0) reaction from 310 to 425 MeV
- 2000
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In: NUCLEAR PHYSICS A. - : ELSEVIER SCIENCE BV. - 0375-9474. ; 663, s. 452C-456C
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Journal article (peer-reviewed)abstract
- Measurements of the differential cross sections of the pp --> pp pi(0) reaction at 310, 320, 340, 360, 400 and 425 MeV have been carried out at the CELSIUS storage ring in Uppsala. An attempt has been made to describe the distributions obtained in terms o
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| 20. |
- Andersson, M, et al.
(author)
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Isospin resolved double pion production in the reaction p+d -> He-3+2 pi
- 2000
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In: PHYSICS LETTERS B. - : ELSEVIER SCIENCE BV. - 0370-2693. ; 485:4, s. 327-333
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Journal article (peer-reviewed)abstract
- Neutral and charged two-pion production in p + d --> He-3 + 2 pi reactions has been studied at CELSIUS at a proton beam energy of 477 MeV. The total cross section for double pion production is 0.22 +/- 0.03 mu b. The ratio of the cross sections for the pr
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| 21. |
- Andersson, M, et al.
(author)
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The exclusive p plus d -> He-3+2 pi reaction at CELSIUS
- 2000
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In: ACTA PHYSICA POLONICA B. - : ACTA PHYSICA POLONICA B, JAGELLONIAN UNIV, INST PHYSICS. ; , s. 2123-2126
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Conference paper (peer-reviewed)abstract
- Neutral and charged two-pion production in p + d --> He-3 --> 2 pi reactions has been studied at a proton beam energy of 477 MeV. The total cross section for double pion production is 0.22 +/- 0.03 mub. The ratio of the cross sections for the production o
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| 22. |
- Betsch, A, et al.
(author)
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Observation of strong final-state effects in pi(+) production in pp collisions at 400 MeV
- 1999
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In: PHYSICS LETTERS B. - : ELSEVIER SCIENCE BV. - 0370-2693. ; 446:2, s. 179-184
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Journal article (peer-reviewed)abstract
- Differential cross sections of the reactions pp --> d pi(+) and pp --> pn pi(+) have been measured at T-p = 400 MeV by detecting the charged ejectiles in the angular range 4 degrees less than or equal to Theta(Lab) less than or equal to 21 degrees. The de
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| 23. |
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| 24. |
- Bilger, R, et al.
(author)
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Threshold eta production in pN reactions at Celsius
- 1998
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In: ACTA PHYSICA POLONICA B. - : ACTA PHYSICA POLONICA B, JAGELLONIAN UNIV, INST PHYSICS. ; , s. 2981-2985
-
Conference paper (peer-reviewed)abstract
- The quasi-free p+n-->d+eta reaction cross section has been measured at threshold using 1295 MeV protons in the CELSIUS storage ring and an internal cluster-jet deuterium target [1]. Excess energies from threshold to 10 MeV in the center of mass of the fin
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| 25. |
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