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1.	Aken, Bronwen L., et al. (author) The Ensembl gene annotation system 2016 In: Database. - : Oxford University Press (OUP). - 1758-0463. Journal article (peer-reviewed)abstract The Ensembl gene annotation system has been used to annotate over 70 different vertebrate species across a wide range of genome projects. Furthermore, it generates the automatic alignment-based annotation for the human and mouse GENCODE gene sets. The system is based on the alignment of biological sequences, including cDNAs, proteins and RNA-seq reads, to the target genome in order to construct candidate transcript models. Careful assessment and filtering of these candidate transcripts ultimately leads to the final gene set, which is made available on the Ensembl website. Here, we describe the annotation process in detail.
2.	Schmid, Michael, et al. (author) Third Report on Chicken Genes and Chromosomes 2015 2015 In: Cytogenetic and Genome Research. - : S. Karger AG. - 1424-8581 .- 1424-859X. ; 145:2, s. 78-179 Journal article (peer-reviewed)

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Author/Editor: Flicek, Paul (2); Aken, Bronwen L. (2); Nag, Rishi (2); Schmid, Michael (1); Ellegren, Hans (1); Wang, Ying (1); show more...; Ayling, Sarah (1); Barrell, Daniel (1); Clarke, Laura (1); Curwen, Valery (1); Fairley, Susan (1); Banet, Julio Fernand ... (1); Billis, Konstantinos (1); Giron, Carlos Garcia (1); Hourlier, Thibaut (1); Howe, Kevin (1); Kähäri, Andreas (1); Kokocinski, Felix (1); Martin, Fergal J. (1); Murphy, Daniel N. (1); Ruffier, Magali (1); Schuster, Michael (1); Tang, Y. Amy (1); Vogel, Jan-Hinnerk (1); White, Simon (1); Zadissa, Amonida (1); Searle, Stephen M. J ... (1); Farre, Marta (1); Nitsche, Anne (1); Stadler, Peter F. (1); De Koning, Dirk-Jan (1); Archibald, Alan L. (1); Burgess, Shane C. (1); Cheng, Hans H. (1); Notredame, Cedric (1); Schmidt, Carl J. (1); Zhou, Huaijun (1); Hanotte, Olivier (1); Klopp, Christophe (1); Burt, David W. (1); Griffin, Darren K. (1); Warren, Wesley C. (1); Gardner, Paul P (1); Howe, Kerstin (1); Chow, William (1); O'Connor, Rebecca (1); Hertel, Jana (1); Wang, Qing (1); Fasold, Mario (1); Derrien, Thomas (1); show less...

University: Uppsala University (2); Swedish University of Agricultural Sciences (1)

Research subject (UKÄ/SCB): Natural sciences (1); Medical and Health Sciences (1); Agricultural Sciences (1)

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