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1.
  • Abraham, Vojtech, et al. (author)
  • Patterns in recent and Holocene pollen accumulation rates across Europe - the Pollen Monitoring Programme Database as a tool for vegetation reconstruction
  • 2021
  • In: Biogeosciences. - : Copernicus GmbH. - 1726-4170 .- 1726-4189. ; 18:15, s. 4511-4534
  • Journal article (peer-reviewed)abstract
    • The collection of modern, spatially extensive pollen data is important for the interpretation of fossil pollen assemblages and the reconstruction of past vegetation communities in space and time. Modern datasets are readily available for percentage data but lacking for pollen accumulation rates (PARs). Filling this gap has been the motivation of the pollen monitoring network, whose contributors monitored pollen deposition in modified Tauber traps for several years or decades across Europe. Here we present this monitoring dataset consisting of 351 trap locations with a total of 2742 annual samples covering the period from 1981 to 2017. This dataset shows that total PAR is influenced by forest cover and climate parameters, which determine pollen productivity and correlate with latitude. Treeless vegetation produced PAR values of at least 140 grains cm(-2) yr(-1). Tree PAR increased by at least 400 grains cm(-2) yr(-1) with each 10% increase in forest cover. Pollen traps situated beyond 200 km of the distribution of a given tree species still collect occasional pollen grains of that species. The threshold of this long-distance transport differs for individual species and is generally below 60 grains cm(-2) yr(-1). Comparisons between modern and fossil PAR from the same regions show similar values. For temperate taxa, modern analogues for fossil PARs are generally found downslope or southward of the fossil sites. While we do not find modern situations comparable to fossil PAR values of some taxa (e.g. Corylus), CO2 fertilization and land use may cause high modern PARs that are not documented in the fossil record. The modern data are now publicly available in the Neotoma Paleoecology Database and aid interpretations of fossil PAR data.
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2.
  • Akselsson, Cecilia, et al. (author)
  • Weathering rates in Swedish forest soils
  • 2019
  • In: Biogeosciences. - : Copernicus GmbH. - 1726-4170 .- 1726-4189. ; 16:22, s. 4429-4450
  • Research review (peer-reviewed)abstract
    • Soil and water acidification was internationally recognised as a severe environmental problem in the late 1960s. The interest in establishing “critical loads” led to a peak in weathering research in the 1980s and 1990s, since base cation weathering is the long-term counterbalance to acidification pressure. Assessments of weathering rates and associated uncertainties have recently become an area of renewed research interest, this time due to demand for forest residues to provide renewable bioenergy. Increased demand for forest fuels increases the risk of depleting the soils of base cations produced in situ by weathering. This is the background to the research programme Quantifying Weathering Rates for Sustainable Forestry (QWARTS), which ran from 2012 to 2019. The programme involved research groups working at different scales, from laboratory experiments to modelling. The aims of this study were to (1) investigate the variation in published weathering rates of base cations from different approaches in Sweden, with consideration of the key uncertainties for each method; (2) assess the robustness of the results in relation to sustainable forestry; and (3) discuss the results in relation to new insights from the QWARTS programme and propose ways to further reduce uncertainties. In the study we found that the variation in estimated weathering rates at single-site level was large, but still most sites could be placed reliably in broader classes of weathering rates. At the regional level, the results from the different approaches were in general agreement. Comparisons with base cation losses after stem-only and whole-tree harvesting showed sites where whole-tree harvesting was clearly not sustainable and other sites where variation in weathering rates from different approaches obscured the overall balance. Clear imbalances appeared mainly after whole-tree harvesting in spruce forests in southern and central Sweden. Based on the research findings in the QWARTS programme, it was concluded that the PROFILE/ForSAFE family of models provides the most important fundamental understanding of the contribution of weathering to long-term availability of base cations to support forest growth. However, these approaches should be continually assessed against other approaches. Uncertainties in the model approaches can be further reduced, mainly by finding ways to reduce uncertainties in input data on soil texture and associated hydrological parameters but also by developing the models, e.g. to better represent biological feedbacks under the influence of climate change.
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3.
  • Alewell, C, et al. (author)
  • Stable carbon isotopes as indicators for environmental change inpalsa peats
  • 2011
  • In: Biogeosciences. - Kaltenburg-Lindau : European Geosciences Union. - 1726-4170 .- 1726-4189. ; 8, s. 1769-1778
  • Journal article (peer-reviewed)abstract
    • Palsa peats are unique northern ecosystems formed under an arctic climate and characterized by a high biodiversity and sensitive ecology. The stability of the palsas are seriously threatened by climate warming which will change the permafrost dynamic and induce a degradation of the mires.We used stable carbon isotope depth profiles in two palsa mires of Northern Sweden to track environmental change during the formation of the mires. Soils dominated by aerobic degradation can be expected to have a clear increase of carbon isotopes (δ13C) with depth, due to preferential release of 12C during aerobic mineralization. In soils with suppressed degradation due to anoxic conditions, stable carbon isotope depth profiles are either more or less uniform indicating no or very low degradation or depth profiles turn to lighter values due to an enrichment of recalcitrant organic substances during anaerobic mineralisation which are depleted in 13C.The isotope depth profile of the peat in the water saturated depressions (hollows) at the yet undisturbed mire Storflaket indicated very low to no degradation but increased rates of anaerobic degradation at the Stordalen site. The latter might be induced by degradation of the permafrost cores in the uplifted areas (hummocks) and subsequent breaking and submerging of the hummock peat into the hollows due to climate warming. Carbon isotope depth profiles of hummocks indicated a turn from aerobic mineralisation to anaerobic degradation at a peat depth between 4 and 25 cm. The age of these turning points was 14C dated between 150 and 670 yr and could thus not be caused by anthropogenically induced climate change. We found the uplifting of the hummocks due to permafrost heave the most likely explanation for our findings. We thus concluded that differences in carbon isotope profiles of the hollows might point to the disturbance of the mires due to climate warming or due to differences in hydrology. The characteristic profiles of the hummocks are indicators for micro-geomorphic change during permafrost up heaving.
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4.
  • Almeida, Juan Pablo, et al. (author)
  • Nitrophobic ectomycorrhizal fungi are associated with enhanced hydrophobicity of soil organic matter in a Norway spruce forest
  • 2022
  • In: Biogeosciences. - : Copernicus GmbH. - 1726-4170 .- 1726-4189. ; 19:15, s. 3713-3726
  • Journal article (peer-reviewed)abstract
    • In boreal forests an important part of the photo assimilates are allocated belowground to support symbiosis of ectomycorrhizal fungi (EMF). The production of EMF extramatrical mycelium can contribute to carbon (C) sequestration in soils, but the extent of this contribution depends on the composition of the EMF community. Some species can decrease soil C stocks by degrading soil organic matter (SOM), and certain species may enhance soil C stocks by producing hydrophobic mycelia which can reduce the rate of SOM decomposition. To test how EMF communities contribute to the development of hydrophobicity in SOM, we incubated sand-filled fungal-ingrowth mesh bags amended with maize compost for one, two or three growing seasons in non-fertilized and fertilized plots in a young Norway spruce (Picea abies) forest. We measured hydrophobicity as determined by the contact angle and the C/N ratios in the mesh bags contents along with the amount of new C entering the mesh bags from outside (determined by C3 input to C4 substrate), and related that to the fungal community composition. The proportion of EMF species increased over time to become the dominant fungal guild after three growing seasons. Fertilization significantly reduced fungal growth and altered EMF communities. In the control plots the most abundant EMF species was Piloderma olivaceum, which was absent in the fertilized plots. The hydrophobicity of the mesh bag contents reached the highest values after three growing seasons only in the unfertilized controls plots and was positively related to the abundance of P. olivaceum, the C/N ratios of the mesh bag contents and the amount of new C in the mesh bags. These results suggest that some EMF species are associated with higher hydrophobicity of SOM and that EMF community shifts induced by fertilization may result in reduced hydrophobicity of soil organic matter, which in turn may reduce C sequestration rates.
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5.
  • Almeida, Juan Pablo, et al. (author)
  • Phosphorus regulates ectomycorrhizal fungi biomass production in a Norway spruce forest
  • 2023
  • In: Biogeosciences. - : Copernicus Publications. - 1726-4170 .- 1726-4189. ; 20:7, s. 1443-1458
  • Journal article (peer-reviewed)abstract
    • Ectomycorrhizal fungi (EMF) are important components of soil microbial communities, and EMF biomass can potentially increase carbon (C) stocks by accumulating in the soils as necromass and producing recalcitrant structures. EMF growth depends on the C allocated belowground by the host trees, and the nutrient limitation on tree growth is expected to influence this allocation. Therefore, studying EMF production and understanding the factors that regulates it in natural soils are important to understand C cycling in forests.Fungal mycelium collected from ingrowth mesh bags is commonly used to estimate EMF biomass, but these measurements might not reflect the total EMF production since turnover rates of the hyphae are not considered. Here we estimated EMF production and turnover in response to P fertilization (applied as superphosphate) in a Norway spruce forest where nitrogen (N) deposition has resulted in phosphorus (P) limitation of plant production by using a combination of mesh bags with different incubation periods and with Bayesian inferences. To test how localized patches of N and P influence EMF production and turnover we amended some bags with a nitrogen source (methylene urea) or P source (apatite). Additionally, the Bayesian model tested the effect of seasonality (time of mesh-bag harvesting) on EMF production and turnover.We found that turnover of EMF was not affected by P fertilization or mesh-bag amendment. P fertilization had a negative effect on EMF production in all the mesh-bag amendments, suggesting a reduced belowground C allocation to the EMF when P limitation is alleviated. Apatite amendment significantly increased EMF biomass production in comparison with the pure quartz bags in the control plots but not in the P-fertilized plots. This indicates that P-rich patches enhance EMF production in P-limited forests, but not when P is not limiting. Urea amendment had a generally positive effect on EMF production, but this was significantly reduced by P fertilization, suggesting that a decrease in EMF production due to the alleviated P limitation will affect N foraging. Seasonality had a significant effect on EMF production, and the differences registered between the treatments were higher during the warmer months and disappeared at the end of the growing season.Many studies highlight the importance of N for regulating belowground C allocation to EMF in northern coniferous forests, but here we show that the P status of the forest can be equally important for belowground carbon allocation to EMF production in areas with high N deposition.
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6.
  • Almén, Anna-Karin, et al. (author)
  • Negligible effects of ocean acidification on Eurytemora affinis (Copepoda) offspring production
  • 2016
  • In: Biogeosciences. - : Copernicus GmbH. - 1726-4170 .- 1726-4189. ; 13:4, s. 1037-1048
  • Journal article (peer-reviewed)abstract
    • Ocean acidification is caused by increasing amounts of carbon dioxide dissolving in the oceans leading to lower seawater pH. We studied the effects of lowered pH on the calanoid copepod Eurytemora affinis during a mesocosm experiment conducted in a coastal area of the Baltic Sea. We measured copepod reproductive success as a function of pH, chlorophyll a concentration, diatom and dinoflagellate biomass, carbon to nitrogen (C : N) ratio of suspended particulate organic matter, as well as copepod fatty acid composition. The laboratory-based experiment was repeated four times during 4 consecutive weeks, with water and copepods sampled from pelagic mesocosms enriched with different CO2 concentrations. In addition, oxygen radical absorbance capacity (ORAC) of animals from the mesocosms was measured weekly to test whether the copepod's defence against oxidative stress was affected by pH. We found no effect of pH on offspring production. Phytoplankton biomass, as indicated by chlorophyll a concentration and dinoflagellate biomass, had a positive effect. The concentration of polyunsaturated fatty acids in the females was reflected in the eggs and had a positive effect on offspring production, whereas monounsaturated fatty acids of the females were reflected in their eggs but had no significant effect. ORAC was not affected by pH. From these experiments we conclude that E. affinis seems robust against direct exposure to ocean acidification on a physiological level, for the variables covered in the study. E. affinis may not have faced acute pH stress in the treatments as the species naturally face large pH fluctuations.
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7.
  • Anderson, Leif G, 1951, et al. (author)
  • Export of calcium carbonate corrosive waters from the East Siberian Sea
  • 2017
  • In: Biogeosciences. - : Copernicus GmbH. - 1726-4170 .- 1726-4189. ; 14:7, s. 1811-1823
  • Journal article (peer-reviewed)abstract
    • The Siberian shelf seas are areas of extensive biogeochemical transformation of organic matter, both of marine and terrestrial origin. This in combination with brine production from sea ice formation results in a cold bottom water of relative high salinity and partial pressure of carbon dioxide (pCO(2)). Data from the SWERUS-C3 expedition compiled on the icebreaker Oden in July to September 2014 show the distribution of such waters at the outer shelf, as well as their export into the deep central Arctic basins. Very high pCO(2) water, up to similar to 1000 mu atm, was observed associated with high nutrients and low oxygen concentrations. Consequently, this water had low saturation state with respect to calcium carbonate down to less than 0.8 for calcite and 0.5 for aragonite. Waters undersaturated in aragonite were also observed in the surface in waters at equilibrium with atmospheric CO2; however, at these conditions the cause of undersaturation was low salinity from river runoff and/or sea ice melt. The calcium carbonate corrosive water was observed all along the continental margin and well out into the deep Makarov and Canada basins at a depth from about 50 m depth in the west to about 150 m in the east. These waters of low aragonite saturation state are traced in historic data to the Canada Basin and in the waters flowing out of the Arctic Ocean north of Greenland and in the western Fram Strait, thus potentially impacting the marine life in the North Atlantic Ocean.
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8.
  • Arevalo-Martinez, D. L., et al. (author)
  • Ideas and perspectives: Land-ocean connectivity through groundwater
  • 2023
  • In: Biogeosciences. - : Copernicus GmbH. - 1726-4170 .- 1726-4189. ; 20:3, s. 647-662
  • Journal article (peer-reviewed)abstract
    • For millennia, humans have gravitated towards coastlines for theirresource potential and as geopolitical centres for global trade. A basicrequirement ensuring water security for coastal communities relies on adelicate balance between the supply and demand of potable water. Theinteraction between freshwater and saltwater in coastal settings is,therefore, complicated by both natural and human-driven environmentalchanges at the land-sea interface. In particular, ongoing sea-level rise,warming and deoxygenation might exacerbate such perturbations. In thiscontext, an improved understanding of the nature and variability ofgroundwater fluxes across the land-sea continuum is timely yet remains outof reach. The flow of terrestrial groundwater across the coastal transitionzone and the extent of freshened groundwater below the present-dayseafloor are receiving increased attention in marine and coastal sciencesbecause they likely represent a significant yet highly uncertain componentof (bio)geochemical budgets and because of the emerging interest in thepotential use of offshore freshened groundwater as a resource. At the sametime, "reverse" groundwater flux from offshore to onshore is of prevalentsocio-economic interest, as terrestrial groundwater resources arecontinuously pressured by over-pumping and seawater intrusion in many coastalregions worldwide. An accurate assessment of the land-ocean connectivitythrough groundwater and its potential responses to future anthropogenicactivities and climate change will require a multidisciplinary approachcombining the expertise of geophysicists, hydrogeologists, (bio)geochemistsand modellers. Such joint activities will lay the scientific basis forbetter understanding the role of groundwater in societally relevant issuessuch as climate change, pollution and the environmental status of thecoastal oceans within the framework of the United Nations SustainableDevelopment Goals. Here, we present our perspectives on future researchdirections to better understand land-ocean connectivity through groundwater,including the spatial distributions of the essential hydrogeologicalparameters, highlighting technical and scientific developments and brieflydiscussing the societal relevance of that connectivity in rapidly changing coastal oceans.
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9.
  • Arnqvist, Johan, 1985-, et al. (author)
  • Robust processing of airborne laser scans to plant area density profiles
  • 2020
  • In: Biogeosciences. - : Copernicus GmbH. - 1726-4170 .- 1726-4189. ; 17:23, s. 5939-5952
  • Journal article (peer-reviewed)abstract
    • We present a new algorithm for the estimation of the plant area density (PAD) profiles and plant area index (PAI) for forested areas based on data from airborne lidar. The new element in the algorithm is to scale and average returned lidar intensities for each lidar pulse, whereas other methods do not use the intensity information at all, use only average intensity values, or do not scale the intensity information, which can cause problems for heterogeneous vegetation. We compare the performance of the new algorithm to three previously published algorithms over two contrasting types of forest: a boreal coniferous forest with a relatively open structure and a dense beech forest. For the beech forest site, both summer (full-leaf) and winter (bare-tree) scans are analyzed, thereby testing the algorithm over a wide spectrum of PAIs. Whereas all tested algorithms give qualitatively similar results, absolute differences are large (up to 400 % for the average PAI at one site). A comparison with ground-based estimates shows that the new algorithm performs well for the tested sites. Specific weak points regarding the estimation of the PAD from airborne lidar data are addressed including the influence of ground reflections and the effect of small-scale heterogeneity, and we show how the effect of these points is reduced in the new algorithm, by combining benefits of earlier algorithms. We further show that low-resolution gridding of the PAD will lead to a negative bias in the resulting estimate according to Jensen's inequality for convex functions and that the severity of this bias is method dependent. As a result, the PAI magnitude as well as heterogeneity scales should be carefully considered when setting the resolution for the PAD gridding of airborne lidar scans.
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10.
  • Baltar, Federico, et al. (author)
  • Cell-free extracellular enzymatic activity is linked to seasonal temperature changes : a case study in the Baltic Sea
  • 2016
  • In: Biogeosciences. - : Copernicus GmbH. - 1726-4170 .- 1726-4189. ; 13:9, s. 2815-2821
  • Journal article (peer-reviewed)abstract
    • Extracellular enzymatic activities (EEA) are a crucial step on the degradation of organic matter. Dissolved (cell-free) extracellular enzymes in seawater can make up a significant contribution of the bulk EEA. However, the factors controlling the proportion of dissolved EEA in the marine environment remain unknown. Here we studied the seasonal changes in the proportion of dissolved relative to total EEA (of alkaline phosphatase [APase], β-glucosidase, [BGase], and leucine aminopeptidase, [LAPase]), in the Baltic Sea for 18 months. The proportio n of dissolved EEA ranged between 37-100%, 0-100%, 34-100% for APase, BGase and LAPase, respectively. A consistent seasonal pattern in the proportion of dissolved EEA was found among all the studied enzymes, with values up to 100% during winter and <40% du ring summer. A significant negative relation was found between the 21proportion of dissolved EEA and temperature, indicating that temperature might be a critical factor controlling the proportion of dissolved relative to total EEA in marine environments. Our results suggest a strong decoupling of hydrolysis rates from mi crobial dynamics in cold waters. This implies that under cold conditions, cell-free enzymes can contribute to substrate availability at large distances from the producing cell, increasing the dissociation between the hydrolysis of organic compounds and the actual microbes producing the enzymes. This also indicates that global warming could come to affect the hydrolysis of organic matter by reducing the hydrolytic activity of cell-free enzymes.
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11.
  • Balzer, Laura, et al. (author)
  • Role of formation and decay of seston organic matter in the fate of methylmercury within the water column of a eutrophic lake
  • 2023
  • In: Biogeosciences. - 1726-4170 .- 1726-4189. ; 20:7, s. 1459-1472
  • Journal article (peer-reviewed)abstract
    • Anoxic microniches in sinking particles in lakes have been identified as important water phase production zones of monomethylmercury (MeHg). However, the production and decay of MeHg during organic matter (OM) decomposition in the water column and its relation to the total Hg concentration in seston are poorly understood. We investigated total Hg and MeHg in relation to chemical changes in sinking seston and hydrochemical settings in a small and shallow (12 m deep) eutrophic lake during phytoplankton blooms from April to November 2019. The results show that MeHg proportions reach up to 22 % in seston in oxygen super saturation at the water surface and highest values (up to 26 %) at the oxic–suboxic redox boundary. MeHg concentrations were highest in May and November when algal biomass production was low and seston were dominated by zooplankton. Biodilution of MeHg concentrations could not be observed in the months of the highest algal biomass production; instead, MeHg and THg concentrations in seston were comparatively high. During suboxic OM decomposition and with decreasing redox potential (Mn and nitrate reduction), the concentration and proportion of MeHg in seston strongly decreased (<0.5 %), whereas total Hg concentrations show a 3.8- to 26-fold increase with water depth. Here, it remains unclear to which extent biodilution on the one hand and OM decomposition on the other alter the MeHg and THg concentration in seston. Changes in OM quality were most intense within or slightly below the redox transition zone (RTZ). The concentrations of MeHg and THg in seston from the RTZ were comparable to those found in the sediment trap material which integrated the changes in seston composition during the entire sampling period, suggesting that changes in the MeHg and THg content in the hypolimnion below the RTZ are comparatively small. Our study suggests that, in shallow eutrophic lakes, the water phase formation and decomposition of MeHg is intense and controlled by the decomposition of algal biomass and is, assumedly, largely disconnected from Hg methylation in sediments, similar to what has been observed in deep oligotrophic lakes.
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12.
  • Bartsch, Annett, et al. (author)
  • Can C-band synthetic aperture radar be used to estimate soil organic carbon storage in tundra?
  • 2016
  • In: Biogeosciences. - : Copernicus GmbH. - 1726-4170 .- 1726-4189. ; 13:19, s. 5453-5470
  • Journal article (peer-reviewed)abstract
    • A new approach for the estimation of soil organic carbon (SOC) pools north of the tree line has been developed based on synthetic aperture radar (SAR; ENVISAT Advanced SAR Global Monitoring mode) data. SOC values are directly determined from backscatter values instead of upscaling using land cover or soil classes. The multi-mode capability of SAR allows application across scales. It can be shown that measurements in C band under frozen conditions represent vegetation and surface structure properties which relate to soil properties, specifically SOC. It is estimated that at least 29 Pg C is stored in the upper 30 cm of soils north of the tree line. This is approximately 25% less than stocks derived from the soil-map-based Northern Circumpolar Soil Carbon Database (NCSCD). The total stored carbon is underestimated since the established empirical relationship is not valid for peatlands or strongly cryoturbated soils. The approach does, however, provide the first spatially consistent account of soil organic carbon across the Arctic. Furthermore, it could be shown that values obtained from 1 km resolution SAR correspond to accounts based on a high spatial resolution (2 m) land cover map over a study area of about 7 x 7 km in NE Siberia. The approach can be also potentially transferred to medium-resolution C-band SAR data such as ENVISAT ASAR Wide Swath with similar to 120m resolution but it is in general limited to regions without woody vegetation. Global Monitoring-mode-derived SOC increases with unfrozen period length. This indicates the importance of this parameter for modelling of the spatial distribution of soil organic carbon storage.
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13.
  • Bastviken, David, et al. (author)
  • Technical Note: Cost-efficient approaches to measure carbon dioxide (CO2) fluxes and concentrations in terrestrial and aquatic environments using mini loggers
  • 2015
  • In: Biogeosciences. - : European Geosciences Union (EGU) / Copernicus Publications. - 1726-4170 .- 1726-4189. ; 12:12, s. 3849-3859
  • Journal article (peer-reviewed)abstract
    • Fluxes of CO2 are important for our understanding of the global carbon cycle and greenhouse gas balances. Several significant CO2 fluxes in nature may still be unknown as illustrated by recent findings of high CO2 emissions from aquatic environments, previously not recognized in global carbon balances. Therefore, it is important to develop convenient and affordable ways to measure CO2 in many types of environments. At present, direct measurements of CO2 fluxes from soil or water, or CO2 concentrations in surface water, are typically labor intensive or require costly equipment. We here present an approach with measurement units based on small inexpensive CO2 loggers, originally made for indoor air quality monitoring, that were tested and adapted for field use. Measurements of soil-atmosphere and lake-atmosphere fluxes, as well as of spatiotemporal dynamics of water CO2 concentrations (expressed as the equivalent partial pressure, pCO(2aq)) in lakes and a stream network are provided as examples. Results from all these examples indicate that this approach can provide a cost- and labor-efficient alternative for direct measurements and monitoring of CO2 flux and pCO(2aq) in terrestrial and aquatic environments.
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14.
  • Bastviken, David, et al. (author)
  • Technical note: Facilitating the use of low-cost methane (CH4) sensors in flux chambers - calibration, data processing, and an open-source make-it-yourself logger
  • 2020
  • In: Biogeosciences. - : COPERNICUS GESELLSCHAFT MBH. - 1726-4170 .- 1726-4189. ; 17:13, s. 3659-3667
  • Journal article (peer-reviewed)abstract
    • A major bottleneck regarding the efforts to better quantify greenhouse gas fluxes, map sources and sinks, and understand flux regulation is the shortage of low-cost and accurate-enough measurement methods. The studies of methane (CH4) - a long-lived greenhouse gas increasing rapidly but irregularly in the atmosphere for unclear reasons, and with poorly understood source-sink attribution - suffer from such method limitations. This study presents new calibration and data processing approaches for use of a low-cost CH4 sensor in flux chambers. Results show that the change in relative CH4 levels can be determined at rather high accuracy in the 2-700 ppm mole fraction range, with modest efforts of collecting reference samples in situ and without continuous access to expensive reference instruments. This opens possibilities for more affordable and time-effective measurements of CH4 in flux chambers. To facilitate such measurements, we also provide a description for building and using an Arduino logger for CH4, carbon dioxide (CO2), relative humidity, and temperature.
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15.
  • Bauwens, Maite, et al. (author)
  • Recent past (1979-2014) and future (2070-2099) isoprene fluxes over Europe simulated with the MEGAN-MOHYCAN model
  • 2018
  • In: Biogeosciences. - : Copernicus GmbH. - 1726-4170 .- 1726-4189. ; 15:12, s. 3673-3690
  • Journal article (peer-reviewed)abstract
    • Isoprene is a highly reactive volatile organic compound emitted by vegetation, known to be a precursor of secondary organic aerosols and to enhance tropospheric ozone formation under polluted conditions. Isoprene emissions respond strongly to changes in meteorological parameters such as temperature and solar radiation. In addition, the increasing CO2 concentration has a dual effect, as it causes both a direct emission inhibition as well as an increase in biomass through fertilization. In this study we used the MEGAN (Model of Emissions of Gases and Aerosols from Nature) emission model coupled with the MOHYCAN (Model of HYdrocarbon emissions by the CANopy) canopy model to calculate the isoprene fluxes emitted by vegetation in the recent past (1979-2014) and in the future (2070-2099) over Europe at a resolution of 0.1° × 0.1°. As a result of the changing climate, modeled isoprene fluxes increased by 1.1%yr-1 on average in Europe over 1979-2014, with the strongest trends found over eastern Europe and European Russia, whereas accounting for the CO2 inhibition effect led to reduced emission trends (0.76%yr-1). Comparisons with field campaign measurements at seven European sites suggest that the MEGAN-MOHYCAN model provides a reliable representation of the temporal variability of the isoprene fluxes over timescales between 1h and several months. For the 1979-2014 period the model was driven by the ECMWF ERA-Interim reanalysis fields, whereas for the comparison of current with projected future emissions, we used meteorology simulated with the ALARO regional climate model. Depending on the representative concentration pathway (RCP) scenarios for greenhouse gas concentration trajectories driving the climate projections, isoprene emissions were found to increase by +7% (RCP2.6), +33% (RCP4.5), and +83% (RCP8.5), compared to the control simulation, and even stronger increases were found when considering the potential impact of CO2 fertilization: +15% (RCP2.6), +52% (RCP4.5), and +141% (RCP8.5). However, the inhibitory CO2 effect goes a long way towards canceling these increases. Based on two distinct parameterizations, representing strong or moderate inhibition, the projected emissions accounting for all effects were estimated to be 0-17% (strong inhibition) and 11-65% (moderate inhibition) higher than in the control simulation. The difference obtained using the two CO2 parameterizations underscores the large uncertainty associated to this effect.
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16.
  • Beckebanze, Lutz, et al. (author)
  • Lateral carbon export has low impact on the net ecosystem carbon balance of a polygonal tundra catchment
  • 2022
  • In: Biogeosciences. - : Copernicus Publications. - 1726-4170 .- 1726-4189. ; 19:16, s. 3863-3876
  • Journal article (peer-reviewed)abstract
    • Permafrost-affected soils contain large quantities of soil organic carbon (SOC). Changes in the SOC pool of a particular ecosystem can be related to its net ecosystem carbon balance (NECB) in which the balance of carbon (C) influxes and effluxes is expressed. For polygonal tundra landscapes, accounts of ecosystem carbon balances in the literature are often solely based on estimates of vertical carbon fluxes. To fill this gap, we present data regarding the lateral export rates of dissolved inorganic carbon (DIC) and dissolved organic carbon (DOC) from a polygonal tundra site in the north Siberian Lena River delta, Russia. We use water discharge observations in combination with concentration measurements of waterborne carbon to derive the lateral carbon fluxes from one growing season (2 June–8 September 2014 for DOC, 8 June–8 September 2014 for DIC). To put the lateral C fluxes into context, we furthermore present the surface–atmosphere eddy covariance fluxes of carbon dioxide (CO2) and methane (CH4) from this study site. The results show cumulative lateral DIC and DOC fluxes of 0.31–0.38 and 0.06–0.08 g m−2, respectively, during the 93 d observation period (8 June–8 September 2014). Vertical turbulent fluxes of CO2-C and CH4-C accumulated to −19.0 ± 1.2 and 1.0 ± 0.02 g m−2 in the same period. Thus, the lateral C export represented about 2 % of the net ecosystem exchange of (NEE) CO2. However, the relationship between lateral and surface–atmosphere fluxes changed over the observation period. At the beginning of the growing season (early June), the lateral C flux outpaced the surface-directed net vertical turbulent CO2 flux, causing the polygonal tundra landscape to be a net carbon source during this time of the year. Later in the growing season, the vertical turbulent CO2 flux dominated the NECB.
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17.
  • Berggren, Martin, et al. (author)
  • Quality transformation of dissolved organic carbon during water transit through lakes : contrasting controls by photochemical and biological processes
  • 2018
  • In: Biogeosciences. - : European Geosciences Union (EGU). - 1726-4170 .- 1726-4189. ; 15:2, s. 457-470
  • Journal article (peer-reviewed)abstract
    • Dissolved organic carbon (DOC) may be removed, transformed, or added during water transit through lakes, resulting in changes in DOC composition and pigmentation (color). However, the process-based understanding of these changes is incomplete, especially for headwater lakes. We hypothesized that because heterotrophic bacteria preferentially consume noncolored DOC, while photochemical processing removes colored fractions, the overall changes in DOC color upon water passage through a lake depend on the relative importance of these two processes, accordingly. To test this hypothesis we combined laboratory experiments with field studies in nine boreal lakes, assessing both the relative importance of different DOC decay processes (biological or photochemical) and the loss of color during water transit time (WTT) through the lakes. We found that influence from photo-decay dominated changes in DOC quality in the epilimnia of relatively clear headwater lakes, resulting in systematic and selective net losses of colored DOC. However, in highly pigmented brown-water lakes (absorbance at 420 nm > 7 m(-1)) biological processes dominated, and there was no systematic relationship between color loss and WTT. Moreover, in situ data and dark experiments supported our hypothesis on the selective microbial removal of nonpigmented DOC, mainly of low molecular weight, leading to persistent water color in these highly colored lakes. Our study shows that brown headwater lakes may not conform to the commonly reported pattern of the selective removal of colored constituents in freshwaters, as DOC can show a sustained degree of pigmentation upon transit through these lakes.
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18.
  • Bermudez, Rafael, et al. (author)
  • Effect of ocean acidification on the structure and fatty acid composition of a natural plankton community in the Baltic Sea
  • 2016
  • In: Biogeosciences. - : Copernicus GmbH. - 1726-4170 .- 1726-4189. ; 13:24, s. 6625-6635
  • Journal article (peer-reviewed)abstract
    • Increasing atmospheric carbon dioxide (CO2) is changing seawater chemistry towards reduced pH, which affects various properties of marine organisms. Coastal and brackish water communities are expected to be less affected by ocean acidification (OA) as these communities are typically adapted to high fluctuations in CO2 and pH. Here we investigate the response of a coastal brackish water plankton community to increasing CO2 levels as projected for the coming decades and the end of this century in terms of community and biochemical fatty acid (FA) composition. A Baltic Sea plankton community was enclosed in a set of offshore mesocosms and subjected to a CO2 gradient ranging from natural concentrations (similar to 347 mu atm fCO(2)) up to values projected for the year 2100 (similar to 1333 mu atm fCO(2)). We show that the phytoplankton community composition was resilient to CO2 and did not diverge between the treatments. Seston FA composition was influenced by community composition, which in turn was driven by silicate and phosphate limitation in the mesocosms and showed no difference between the CO2 treatments. These results suggest that CO2 effects are dampened in coastal communities that already experience high natural fluctuations in pCO(2). Although this coastal plankton community was tolerant of high pCO(2) levels, hypoxia and CO2 uptake by the sea can aggravate acidification and may lead to pH changes outside the currently experienced range for coastal organisms.
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19.
  • Bischoff, Juliane, et al. (author)
  • Source, transport and fate of soil organic matter inferred from microbial biomarker lipids on the East Siberian Arctic Shelf
  • 2016
  • In: Biogeosciences. - : Copernicus GmbH. - 1726-4170 .- 1726-4189. ; 13:17, s. 4899-4914
  • Journal article (peer-reviewed)abstract
    • The Siberian Arctic contains a globally significant pool of organic carbon (OC) vulnerable to enhanced warming and subsequent release by both fluvial and coastal erosion processes. However, the rate of release, its behaviour in the Arctic Ocean and vulnerability to remineralisation is poorly understood. Here we combine new measurements of microbial biohopanoids including adenosylhopane, a lipid associated with soil microbial communities, with published glycerol dialkyl glycerol tetraethers (GDGTs) and bulk delta C-13 measurements to improve knowledge of the fate of OC transported to the East Siberian Arctic Shelf (ESAS). The microbial hopanoid-based soil OC proxy R'(soil) ranges from 0.0 to 0.8 across the ESAS, with highest values nearshore and decreases offshore. Across the shelf R'(soil) displays a negative linear correlation with bulk delta C-13 measurements (r(2) = -0.73, p = < 0 : 001). When compared to the GDGT-based OC proxy, the branched and isoprenoid tetraether (BIT) index, a decoupled (non-linear) behaviour on the shelf was observed, particularly in the Buor-Khaya Bay, where the R'(soil) shows limited variation, whereas the BIT index shows a rapid decline moving away from the Lena River outflow channels. This reflects a balance between delivery and removal of OC from different sources. The good correlation between the hopanoid and bulk terrestrial signal suggests a broad range of hopanoid sources, both fluvial and via coastal erosion, whilst GDGTs appear to be primarily sourced via fluvial transport. Analysis of ice complex deposits (ICDs) revealed an average R'(soil) of 0.5 for the Lena Delta, equivalent to that of the Buor-Khaya Bay sediments, whilst ICDs from further east showed higher values (0.6-0.85). Although R'(soil) correlates more closely with bulk OC than the BIT, our understanding of the endmembers of this system is clearly still incomplete, with variations between the different East Siberian Arctic regions potentially reflecting differences in environmental conditions (e.g. temperature, pH), but other physiological controls on microbial bacteriohopanepolyol (BHP) production under psychrophilic conditions are as yet unknown.
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20.
  • Blume-Werry, Gesche, 1985-, et al. (author)
  • Ideas and perspectives : Alleviation of functional limitations by soil organisms is key to climate feedbacks from arctic soils
  • 2023
  • In: Biogeosciences. - : Copernicus Publications. - 1726-4170 .- 1726-4189. ; 20:10, s. 1979-1990
  • Journal article (peer-reviewed)abstract
    • Arctic soils play an important role in Earth's climate system, as they store large amounts of carbon that, if released, could strongly increase greenhouse gas levels in our atmosphere. Most research to date has focused on how the turnover of organic matter in these soils is regulated by abiotic factors, and few studies have considered the potential role of biotic regulation. However, arctic soils are currently missing important groups of soil organisms, and here, we highlight recent empirical evidence that soil organisms' presence or absence is key to understanding and predicting future climate feedbacks from arctic soils. We propose that the arrival of soil organisms into arctic soils may introduce novel functions, resulting in increased rates of, for example, nitrification, methanogenesis, litter fragmentation, or bioturbation, and thereby alleviate functional limitations of the current community. This alleviation can greatly enhance decomposition rates, in parity with effects predicted due to increasing temperatures. We base this argument on a series of emerging experimental evidence suggesting that the dispersal of until-then absent micro-, meso-, and macroorganisms (i.e. from bacteria to earthworms) into new regions and newly thawed soil layers can drastically affect soil functioning. These new observations make us question the current view that neglects organism-driven alleviation effects when predicting future feedbacks between arctic ecosystems and our planet's climate. We therefore advocate for an updated framework in which soil biota and the functions by which they influence ecosystem processes become essential when predicting the fate of soil functions in warming arctic ecosystems.
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21.
  • Bonaglia, Stefano, et al. (author)
  • The fate of fixed nitrogen in marine sediments with low organic loading : an in situ study
  • 2017
  • In: Biogeosciences. - : Copernicus GmbH. - 1726-4170 .- 1726-4189. ; 14:2, s. 285-300
  • Journal article (peer-reviewed)abstract
    • Over the last decades, the impact of human activities on the global nitrogen (N) cycle has drastically increased. Consequently, benthic N cycling has mainly been studied in anthropogenically impacted estuaries and coasts, while in oligotrophic systems its understanding is still scarce. Here we report on benthic solute fluxes and on rates of denitrification, anammox, and dissimilatory nitrate reduction to ammonium (DNRA) studied by in situ incubations with benthic chamber landers during two cruises to the Gulf of Bothnia (GOB), a cold, oligotrophic basin located in the northern part of the Baltic Sea. Rates of N burial were also inferred to investigate the fate of fixed N in these sediments. Most of the total dissolved fixed nitrogen (TDN) diffusing to the water column was composed of organic N. Average rates of dinitrogen (N-2) production by denitrification and anammox (range: 53-360 mu mol Nm(-2) day(-1)) were comparable to those from Arctic and subarctic sediments worldwide (range: 34-344 mu mol Nm(-2) day(-1)). Anammox accounted for 18-26% of the total N2 production. Absence of free hydrogen sulfide and low concentrations of dissolved iron in sediment pore water suggested that denitrification and DNRA were driven by organic matter oxidation rather than chemolithotrophy. DNRA was as important as denitrification at a shallow, coastal station situated in the northern Bothnian Bay. At this pristine and fully oxygenated site, ammonium regeneration through DNRA contributed more than one-third to the TDN efflux and accounted, on average, for 45% of total nitrate reduction. At the offshore stations, the proportion of DNRA in relation to denitrification was lower (0-16% of total nitrate reduction). Median value and range of benthic DNRA rates from the GOB were comparable to those from the southern and central eutrophic Baltic Sea and other temperate estuaries and coasts in Europe. Therefore, our results contrast with the view that DNRA is negligible in cold and well-oxygenated sediments with low organic carbon loading. However, the mechanisms behind the variability in DNRA rates between our sites were not resolved. The GOB sediments were a major source (237 kt yr(-1), which corresponds to 184% of the external N load) of fixed N to the water column through recycling mechanisms. To our knowledge, our study is the first to document the simultaneous contribution of denitrification, DNRA, anammox, and TDN recycling combined with in situ measurements.
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22.
  • Bonnet, Sophie, et al. (author)
  • In-depth characterization of diazotroph activity across the western tropical South Pacific hotspot of N-2 fixation (OUTPACE cruise)
  • 2018
  • In: Biogeosciences. - : Copernicus GmbH. - 1726-4170 .- 1726-4189. ; 15:13, s. 4215-4232
  • Journal article (peer-reviewed)abstract
    • Here we report N-2 fixation rates from a similar to 4000 km transect in the western and central tropical South Pacific, a particularly undersampled region in the world ocean. Water samples were collected in the euphotic layer along a west to east transect from 160 degrees E to 160 degrees W that covered contrasting trophic regimes, from oligotrophy in the Melanesian archipelago (MA) waters to ultraoligotrophy in the South Pacific Gyre (GY) waters. N-2 fixation was detected at all 17 sampled stations with an average depth-integrated rate of 631 +/- 286 mu mol Nm(-2) d(-1) (range 196-1153 mu mol Nm(-2) d(-1)) in MA waters and of 85 +/- 79 mu mol Nm(-2) d(-1) (range 18-172 mu mol Nm(-2) d(-1)) in GY waters. Two cyanobacteria, the larger colonial filamentous Trichodesmium and the smaller UCYN-B, dominated the enumerated diazotroph community (>80 %) and gene expression of the nifH gene (cDNA > 10(5) nifH copies L-1) in MA waters. Single-cell isotopic analyses performed by nanoscale secondary ion mass spectrometry (nanoSIMS) at selected stations revealed that Trichodesmium was always the major contributor to N-2 fixation in MA waters, accounting for 47.1-83.8% of bulk N-2 fixation. The most plausible environmental factors explaining such exceptionally high rates of N-2 fixation in MA waters are discussed in detail, emphasizing the role of macro- and micro-nutrient (e.g., iron) availability, seawater temperature and currents.
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23.
  • Borg, Hans, et al. (author)
  • Long-term trends of water chemistry in mountain streams in Sweden - slow recovery from acidification
  • 2014
  • In: Biogeosciences. - Göttingen : COPERNICUS GESELLSCHAFT MBH. - 1726-4170 .- 1726-4189. ; 11:1, s. 173-184
  • Journal article (peer-reviewed)abstract
    • The water chemistry of streams and precipitation in the province of Jamtland, northern Sweden has been monitored since the 1980s to study long-term trends, occurrence of acid episodes, and effects of liming. The acidity in precipitation increased in the 1970s, followed by a loss of acid neutralizing capacity (ANC) and low pH in the streams. Sulfur deposition began to decrease in the 1980s, until approximately 2000, after which the decrease levelled out. Stream water sulfate concentration followed the precipitation trend but decreased more slowly and since the late 1990s a subtle increase was observed. Sulfate concentrations in the snow typically have been higher than or equal to the stream sulfate levels. However, during the period of rapid deposition decrease and also since 2005 stream sulfate has sometimes exceeded snow sulfate, indicating desorption of stored soil sulfate, possibly because of climate-related changes in runoff routes through the soil profiles, following shorter periods of frost. From 1982 to 2000, total organic carbon (TOC) increased by approximately 0.1 mg L-1 yr(-1). The mean trends in sulfate and TOC from approximately 1990 until today were generally opposite. Acidic episodes with pH 4.0 at flow peaks occurred frequently in the unlimed streams, despite relatively well-buffered waters at baseflow. To evaluate the main causes for the loss of ANC during episodes, the changes in major ion concentrations during high flow episodes were evaluated. The most important factors contributing to ANC loss were dilution of base cations (Na+, K+, Ca2+, Mg2+), enrichment of organic anions and enrichment of sulfate. Wetland liming started in 1985 after which the earlier observed extreme peak values of iron, manganese and aluminium, did not reoccur. The studied area is remote from emission sources in Europe, but the critical load of acidity is still exceeded. The long-term recovery observed in the unlimed streams is thus slow, and severe acidic episodes still occur.
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24.
  • Bouton, Anthony, et al. (author)
  • Linking the distribution of microbial deposits from the Great Salt Lake (Utah, USA) to tectonic and climatic processes
  • 2016
  • In: Biogeosciences. - : Copernicus GmbH. - 1726-4170 .- 1726-4189. ; 13:19, s. 5511-5526
  • Journal article (peer-reviewed)abstract
    • The Great Salt Lake is a modern hypersaline lake, in which an extended modern and ancient microbial sedimentary system has developed. Detailed mapping based on aerial images and field observations can be used to identify non-random distribution patterns of microbial deposits, such as paleoshorelines associated with extensive polygons or fault-parallel alignments. Although it has been inferred that climatic changes controlling the lake level fluctuations explain the distribution of paleoshorelines and polygons, straight microbial deposit alignments may underline a normal fault system parallel to the Wasatch Front. This study is based on observations over a decimetre to kilometre spatial range, resulting in an integrated conceptual model for the controls on the distribution of the microbial deposits. The morphology, size and distribution of these deposits result mainly from environmental changes (i.e. seasonal to long-term water level fluctuations, particular geomorphological heritage, fault-induced processes, groundwater seepage) and have the potential to bring further insights into the reconstruction of paleoenvironments and paleoclimatic changes through time. New ra-diocarbon ages obtained on each microbial macrofabric described in this study improve the chronological framework and question the lake level variations that are commonly assumed.
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25.
  • Brachmann, Cole, 1993, et al. (author)
  • Herbivore-shrub interactions influence ecosystem respiration and biogenic volatile organic compound composition in the subarctic
  • 2023
  • In: Biogeosciences. - 1726-4170 .- 1726-4189. ; 20, s. 4069-4086
  • Journal article (peer-reviewed)abstract
    • Arctic ecosystems are warming nearly 4 times faster than the global average, which is resulting in plant community shifts and subsequent changes in biogeochemical processes such as gaseous fluxes. Additionally, herbivores shape plant communities and thereby may alter the magnitude and composition of ecosystem respiration and biogenic volatile organic compound (BVOC) emissions. Here we determine the effect of large mammalian herbivores on ecosystem respiration and BVOC emissions in two southern and two northern sites in Swedish Scandes, encompassing mountain birch (LOMB) and shrub heath (LORI) communities in the south and low-herb meadow (RIGA) and shrub heath (RIRI) communities in the north. Herbivory significantly altered BVOC composition between sites and decreased ecosystem respiration at RIGA. The difference in graminoid cover was found to have a large effect on ecosystem respiration between sites as RIGA, with the highest cover, had 35 % higher emissions than the next highest-emitting site (LOMB). Additionally, LOMB had the highest emissions of terpenes, with the northern sites having significantly lower emissions. Differences between sites were primarily due to differences in exclosure effects and soil temperature and the prevalence of different shrub growth forms. Our results suggest that herbivory has a significant effect on trace gas fluxes in a productive meadow community and that differences between communities may be driven by differences in shrub composition. Copyright:
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26.
  • Bragée, Petra, et al. (author)
  • Historical TOC concentration minima during peak sulfur deposition in two Swedish lakes
  • 2015
  • In: Biogeosciences. - : Copernicus GmbH. - 1726-4170 .- 1726-4189. ; 12:2, s. 307-322
  • Journal article (peer-reviewed)abstract
    • Decadal-scale variations in total organic carbon (TOC) concentration in lake water since AD1200 in two small lakes in southern Sweden were reconstructed based on visible-near-infrared spectroscopy (VNIRS) of their recent sediment successions. In order to assess the impacts of local land-use changes, regional variations in sulfur, and nitrogen deposition and climate variations on the inferred changes in TOC concentration, the same sediment records were subjected to multi-proxy palaeolimnological analyses. Changes in lake-water pH were inferred from diatom analysis, whereas pollen-based land-use reconstructions (Landscape Reconstruction Algorithm) together with geochemical records provided information on catchment-scale environmental changes, and comparisons were made with available records of climate and population density. Our long-term reconstructions reveal that inferred lake-water TOC concentrations were generally high prior to AD1900, with additional variability coupled mainly to changes in forest cover and agricultural land-use intensity. The last century showed significant changes, and unusually low TOC concentrations were inferred at AD1930-1990, followed by a recent increase, largely consistent with monitoring data. Variations in sulfur emissions, with an increase in the early 1900s to a peak around AD1980 and a subsequent decrease, were identified as an important driver of these dynamics at both sites, while processes related to the introduction of modern forestry and recent increases in precipitation and temperature may have contributed, but the effects differed between the sites. The increase in lake-water TOC concentration from around AD1980 may therefore reflect a recovery process. Given that the effects of sulfur deposition now subside and that the recovery of lake-water TOC concentrations has reached pre-industrial levels, other forcing mechanisms related to land management and climate change may become the main drivers of TOC concentration changes in boreal lake waters in the future.
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27.
  • Breitbarth, Eike, et al. (author)
  • Dissolved iron (II) in the Baltic Sea surface water and implications for cyanobacterial bloom development
  • 2009
  • In: Biogeosciences. - : Copernicus GmbH. - 1726-4170 .- 1726-4189. ; 6:Special issue, s. 2397-2420
  • Journal article (peer-reviewed)abstract
    • Iron chemistry measurements were conducted during summer 2007 at two distinct locations in the Baltic Sea (Gotland Deep and Landsort Deep) to evaluate the role of iron for cyanobacterial bloom development in these estuarine waters. Depth profiles of Fe(II) were measured by chemiluminescent flow injection analysis (CL-FIA). Up to 0.9 nmol Fe(II) L−1 were detected in light penetrated surface waters, which constitutes up to 20% to the dissolved Fe pool. This bioavailable iron source is a major contributor to the Fe requirements of Baltic Sea phytoplankton and apparently plays a major role for cyanobacterial bloom development during our study. Measured Fe(II) half life times in oxygenated water exceed predicted values and indicate organic Fe(II) complexation. Potential sources for Fe(II) ligands, including rainwater, are discussed. Fe(II) concentrations of up to 1.44 nmol L−1 were detected at water depths below the euphotic zone, but above the oxic anoxic interface. Mixed layer depths after strong wind events are not deep enough in summer time to penetrate the oxic-anoxic boundary layer. However, Fe(II) from anoxic bottom water may enter the sub-oxic zone via diapycnal mixing and diffusion.
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28.
  • Breitbarth, E., et al. (author)
  • Iron biogeochemistry across marine systems : progress from the past decade
  • 2010
  • In: Biogeosciences. - : Copernicus GmbH. - 1726-4170 .- 1726-4189. ; 7:3, s. 1075-1097
  • Journal article (peer-reviewed)abstract
    • Based on an international workshop (Gothenburg, 14-16 May 2008), this review article aims to combine interdisciplinary knowledge from coastal and open ocean research on iron biogeochemistry. The major scientific findings of the past decade are structured into sections on natural and artificial iron fertilization, iron inputs into coastal and estuarine systems, colloidal iron and organic matter, and biological processes. Potential effects of global climate change, particularly ocean acidification, on iron biogeochemistry are discussed. The findings are synthesized into recommendations for future research areas
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29.
  • Breitbarth, Eike, et al. (author)
  • Physiological constraints on the global distribution of Trichodesmium – effect of temperature on diazotrophy
  • 2007
  • In: Biogeosciences. - : Copernicus GmbH. - 1726-4170 .- 1726-4189. ; 4:1, s. 53-61
  • Journal article (peer-reviewed)abstract
    • The cyanobacterium Trichodesmium is an important link in the global nitrogen cycle due to its significant input of atmospheric nitrogen to the ocean. Attempts to incorporate Trichodesmium in ocean biogeochemical circulation models have, so far, relied on the observed correlation between temperature and Trichodesmium abundance. This correlation may result in part from a direct effect of temperature on Trichodesmium growth rates through the control of cellular biochemical processes, or indirectly through temperature influence on mixed layer depth, light and nutrient regimes. Here we present results indicating that the observed correlation of Trichodesmium with temperature in the field reflects primarily the direct physiological effects of temperature on diazotrophic growth of Trichodesmium. Trichodesmium IMS-101 (an isolate of T. erythraeum) could acclimate and grow at temperatures ranging from 20 to 34C.Maximum growth rates (μmax=0.25 day-1) and maximum nitrogen fixation rates (0.13 mmol N mol POC-1 h-1) were measured within 24 to 30C. Combining this empirical relationship with global warming scenarios derived from state-of-the-art climate models sets a physiological constraint on the future distribution of Trichodesmium that could significantly affect the future nitrogen input into oligotrophic waters by this diazotroph.
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30.
  • Brinkmann, Inda, et al. (author)
  • Drought recorded by Ba/Ca in coastal benthic foraminifera
  • 2022
  • In: Biogeosciences. - : Copernicus GmbH. - 1726-4170 .- 1726-4189. ; 19:9, s. 2523-2535
  • Journal article (peer-reviewed)abstract
    • Increasing occurrences of extreme weather events, such as the 2018 drought over northern Europe, are a concerning issue under global climate change. High-resolution archives of natural hydroclimate proxies, such as rapidly accumulating sediments containing biogenic carbonates, offer the potential to investigate the frequency and mechanisms of such events in the past. Droughts alter the barium (Ba) concentration of near-continent seawater through the reduction in Ba input from terrestrial runoff, which in turn may be recorded as changes in the chemical composition (Ba/Ca) of foraminiferal calcium carbonates accumulating in sediments. However, so far the use of Ba/Ca as a discharge indicator has been restricted to planktonic foraminifera, despite the high relative abundance of benthic species in coastal, shallow-water sites. Moreover, benthic foraminiferal Ba/Ca has mainly been used in open-ocean records as a proxy for paleo-productivity. Here we report on a new geochemical data set measured from living (CTG-labeled) benthic foraminiferal species to investigate the capability of benthic Ba/Ca to record changes in river runoff over a gradient of contrasting hydroclimatic conditions. Individual foraminifera (Bulimina marginata, Nonionellina labradorica) were analyzed by laser-ablation ICP-MS over a seasonal and spatial gradient within Gullmar Fjord, Swedish west coast, during 2018-2019. The results are compared to an extensive meteorological and hydrological data set, as well as sediment and pore-water geochemistry. Benthic foraminiferal Ba/Ca correlates significantly to riverine runoff; however, the signals contain both spatial trends with distance to Ba source and species-specific influences such as micro-habitat preferences. We deduce that shallow-infaunal foraminifera are especially suitable as proxy for terrestrial Ba input and discuss the potential influence of water-column and pore-water Ba cycling. While distance to Ba source, water depth, pore-water geochemistry, and species-specific effects need to be considered in interpreting the data, our results demonstrate confidence in the use of Ba/Ca of benthic foraminifera from near-continent records as a proxy for past riverine discharge and to identify periods of drought.
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31.
  • Brown, Dylan R., et al. (author)
  • Hypersaline tidal flats as important "blue carbon" systems : a case study from three ecosystems
  • 2021
  • In: Biogeosciences. - : COPERNICUS GESELLSCHAFT MBH. - 1726-4170 .- 1726-4189. ; 18:8, s. 2527-2538
  • Journal article (peer-reviewed)abstract
    • Hypersaline tidal flats (HTFs) are coastal ecosystems with freshwater deficits often occurring in arid or semiarid regions near mangrove supratidal zones with no major fluvial contributions. Here, we estimate that organic carbon (OC), total nitrogen (TN) and total phosphorus (TP) were buried at rates averaging 21 (+/- 6), 1.7 (+/- 0.3) and 1.4 (+/- 0.3) gm(-2) yr(-1), respectively, during the previous century in three contrasting HTF systems, one in Brazil (eutrophic) and two in Australia (oligotrophic). Although these rates are lower than those from nearby mangrove, saltmarsh and seagrass systems, the importance of HTFs as sinks for OC, TN and TP may be significant given their extensive coverage. Despite the measured short-term variability between net air-saltpan CO2 influx and emission estimates found during the dry and wet season in the Brazilian HTF, the only site with seasonal CO2 flux measurements, the OC sedimentary profiles over several decades suggest efficient OC burial at all sites. Indeed, the stable isotopes of OC and TN (delta C-13 and delta N-1(5)) along with C : N ratios show that microphytobenthos are the major source of the buried OC in these HTFs. Our findings highlight a previously unquantified carbon as well as a nutrient sink and suggest that coastal HTF ecosystems could be included in the emerging blue carbon framework.
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32.
  • Brüchert, Volker, et al. (author)
  • Carbon mineralization in Laptev and East Siberian sea shelf and slope sediment
  • 2018
  • In: Biogeosciences. - : Copernicus GmbH. - 1726-4170 .- 1726-4189. ; 15:2, s. 471-490
  • Journal article (peer-reviewed)abstract
    • The Siberian Arctic Sea shelf and slope is a key region for the degradation of terrestrial organic material transported from the organic carbon-rich permafrost regions of Siberia. We report on sediment carbon mineralization rates based on O2 microelectrode profiling, intact sediment core incubations, 35 S-sulfate tracer experiments, porewater dissolved inorganic carbon (DIC), δ13 CDIC, and iron, manganese, and ammonium concentrations from 20 shelf and slope stations. This data set provides a spatial overview of sediment carbon mineralization rates and pathways over large parts of the outer Laptev and East Siberian Arctic shelf and slope, and allowed us to assess degradation rates and efficiency of carbon burial in these sediments. Rates of oxygen uptake and iron and manganese reduction were comparable to temperate shelf and slope environments, but bacterial sulfate reduction rates were comparatively low. In the topmost 20 to 50 cm of sediment, aerobic carbon mineralization dominated degradation and comprised on average 82% of the depthintegrated carbon mineralization. Oxygen uptake rates and 35 S-sulfate reduction rates were higher in the eastern East Siberian Sea shelf compared to the Laptev Sea shelf. DIC/NH4 + ratios in porewaters and the stable carbon isotope composition of remineralized DIC indicated that the degraded organic matter on the Siberian shelf and slope was a mixture of marine and terrestrial organic matter. Based on dual end member calculations, the terrestrial organic carbon contribution varied between 32% and 36%, with a higher contribution in the Laptev Sea than in the East Siberian Sea. Extrapolation of the measured degradation rates using  isotope end member apportionment over the outer shelf of the Laptev and East Siberian Sea suggests that about 16 Tg C per year are respired in the outer shelf sea floor sediment. Of the organic matter buried below the oxygen penetration depth, between 0.6 and 1.3 Tg C per year are degraded by anaerobic processes, with a terrestrial organic carbon contribution ranging between 0.3 and 0.5 Tg per year.
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33.
  • Bröder, Lisa, et al. (author)
  • Fate of terrigenous organic matter across the Laptev Sea from the mouth of the Lena River to the deep sea of the Arctic interior
  • 2016
  • In: Biogeosciences. - : Copernicus GmbH. - 1726-4170 .- 1726-4189. ; 13:17, s. 5003-5019
  • Journal article (peer-reviewed)abstract
    • Ongoing global warming in high latitudes may cause an increasing supply of permafrost-derived organic carbon through both river discharge and coastal erosion to the Arctic shelves. Mobilized permafrost carbon can be either buried in sediments, transported to the deep sea or degraded to CO2 and outgassed, potentially constituting a positive feedback to climate change. This study aims to assess the fate of terrigenous organic carbon (TerrOC) in the Arctic marine environment by exploring how it changes in concentration, composition and degradation status across the wide Laptev Sea shelf. We analyzed a suite of terrestrial biomarkers as well as source-diagnostic bulk carbon isotopes (delta C-13, Delta C-14) in surface sediments from a Laptev Sea transect spanning more than 800 km from the Lena River mouth (< 10m water depth) across the shelf to the slope and rise (2000-3000m water depth). These data provide a broad view on different TerrOC pools and their behavior during cross-shelf transport. The concentrations of lignin phenols, cutin acids and high-molecular-weight (HMW) wax lipids (tracers of vascular plants) decrease by 89-99% along the transect. Molecular-based degradation proxies for TerrOC (e.g., the carbon preference index of HMW lipids, the HMW acids / alkanes ratio and the acid / aldehyde ratio of lignin phenols) display a trend to more degraded TerrOC with increasing distance from the coast. We infer that the degree of degradation of permafrost-derived TerrOC is a function of the time spent under oxic conditions during protracted cross-shelf transport. Future work should therefore seek to constrain cross-shelf transport times in order to compute a TerrOC degradation rate and thereby help to quantify potential carbon-climate feedbacks.
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34.
  • Buendía, Corina, et al. (author)
  • Evaluating the effect of nutrient redistribution by animals on the phosphorus cycle of lowland Amazonia
  • 2018
  • In: Biogeosciences. - : Copernicus GmbH. - 1726-4170 .- 1726-4189. ; 15:1, s. 279-295
  • Journal article (peer-reviewed)abstract
    • Phosphorus (P) availability decreases with soil age and potentially limits the productivity of ecosystems growing on old and weathered soils. Despite growing on ancient soils, ecosystems of lowland Amazonia are highly productive and are among the most biodiverse on Earth. P eroded and weathered in the Andes is transported by the rivers and deposited in floodplains of the lowland Amazon basin creating hotspots of P fertility. We hypothesize that animals feeding on vegetation and detritus in these hotspots may redistribute P to P-depleted areas, thus contributing to dissipate the P gradient across the landscape. Using a mathematical model, we show that animal-driven spatial redistribution of P from rivers to land and from seasonally flooded to terra firme (upland) ecosystems may sustain the P cycle of Amazonian lowlands. Our results show how P imported to land by terrestrial piscivores in combination with spatial redistribution of herbivores and detritivores can significantly enhance the P content in terra firme ecosystems, thereby highlighting the importance of food webs for the biogeochemical cycling of Amazonia.
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35.
  • Burdorf, L. D. W., et al. (author)
  • Long-distance electron transport occurs globally in marine sediments
  • 2017
  • In: Biogeosciences. - : Copernicus GmbH. - 1726-4170 .- 1726-4189. ; 14:3, s. 683-701
  • Journal article (peer-reviewed)abstract
    • Recently, long filamentous bacteria have been reported conducting electrons over centimetre distances in marine sediments. These so-called cable bacteria perform an electrogenic form of sulfur oxidation, whereby long-distance electron transport links sulfide oxidation in deeper sediment horizons to oxygen reduction in the upper millimetres of the sediment. Electrogenic sulfur oxidation exerts a strong impact on the local sediment biogeochemistry, but it is currently unknown how prevalent the process is within the seafloor. Here we provide a state-of-the-art assessment of its global distribution by combining new field observations with previous reports from the literature. This synthesis demonstrates that electrogenic sulfur oxidation, and hence microbial long-distance electron transport, is a widespread phenomenon in the present-day seafloor. The process is found in coastal sediments within different climate zones (off the Netherlands, Greenland, the USA, Australia) and thrives on a range of different coastal habitats (estuaries, salt marshes, mangroves, coastal hypoxic basins, intertidal flats). The combination of a widespread occurrence and a strong local geochemical imprint suggests that electrogenic sulfur oxidation could be an important, and hitherto overlooked, component of the marine cycle of carbon, sulfur and other elements.
  •  
36.
  • Burkhardt, J., et al. (author)
  • Modelling the dynamic chemical interactions of atmospheric ammonia with leaf surface wetness in a managed grassland canopy
  • 2009
  • In: Biogeosciences. - Göttingen : Copernicus Publications. - 1726-4170 .- 1726-4189. ; 6:1, s. 67-84
  • Journal article (peer-reviewed)abstract
    • Ammonia exchange fluxes between grassland and the atmosphere were modelled on the basis of stomatal compensation points and leaf surface chemistry, and compared with measured fluxes during the GRAMINAE intensive measurement campaign in spring 2000 near Braunschweig, Germany. Leaf wetness and dew chemistry in grassland were measured together with ammonia fluxes and apoplastic NH4+ and H+ concentration, and the data were used to apply, validate and further develop an existing model of leaf surface chemistry and ammonia exchange. Foliar leaf wetness which is known to affect ammonia fluxes may be persistent after the end of rainfall, or sustained by recondensation of water vapour originating from the ground or leaf transpiration, so measured leaf wetness values were included in the model. pH and ammonium concentrations of dew samples collected from grass were compared to modelled values.The measurement period was divided into three phases: a relatively wet phase followed by a dry phase in the first week before the grass was cut, and a second drier week after the cut. While the first two phases were mainly characterised by ammonia deposition and occasional short emission events, regular events of strong ammonia emissions were observed during the post-cut period. A single-layer resistance model including dynamic cuticular and stomatal exchange could describe the fluxes well before the cut, but after the cut the stomatal compensation points needed to numerically match measured fluxes were much higher than the ones measured by bioassays, suggesting another source of ammonia fluxes. Considerably better agreement both in the direction and the size range of fluxes were obtained when a second layer was introduced into the model, to account for the large additional ammonia source inherent in the leaf litter at the bottom of the grass canopy. Therefore, this was found to be a useful extension of the mechanistic dynamic chemistry model by keeping the advantage of requiring relatively little site-specific information.
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37.
  • Bäckstrand, Kristina, et al. (author)
  • Annual carbon gas budget for a subarctic peatland, northern Sweden
  • 2010
  • In: Biogeosciences. - : Copernicus GmbH. - 1726-4170 .- 1726-4189. ; 7:1, s. 95-108
  • Journal article (peer-reviewed)abstract
    • Temperatures in the Arctic regions are rising, thawing permafrost and exposing previously stable soil organic carbon (OC) to decomposition. This can result in northern latitude soils, which have accumulated large amounts of OC potentially shifting from atmospheric C sinks to C sources with positive feedback on climate warming. In this paper, we estimate the annual net C gas balance (NCB) of the subarctic mire Stordalen, based on automatic chamber measurements of CO2 and total hydrocarbon (THC; CH4 and NMVOCs) exchange. We studied the dominant vegetation communities with different moisture and permafrost characteristics; a dry Palsa underlain by permafrost, an intermediate thaw site with Sphagnum spp. and a wet site with Eriophorum spp. where the soil thaws completely. Whole year accumulated fluxes of CO2 were estimated to 29.7, −35.3 and −34.9 gC m−2 respectively for the Palsa, Sphagnum and Eriophorum sites (positive flux indicates an addition of C to the atmospheric pool). The corresponding annual THC emissions were 0.5, 6.2 and 31.8 gC m−2 for the same sites. Therefore, the NCB for each of the sites was 30.2, −29.1 and −3.1 gC m−2 respectively for the Palsa, Sphagnum and Eriophorum site. On average, the whole mire was a CO2 sink of 2.6 gC m−2 and a THC source of 6.4 gC m−2 over a year. Consequently, the mire was a net source of C to the atmosphere by 3.9 gC m−2 (based on area weighted estimates for each of the three plant communities). Early and late snow season efflux of CO2 and THC emphasize the importance of winter measurements for complete annual C budgets. Decadal vegetation changes at Stordalen indicate that both the productivity and the THC emissions increased between 1970 and 2000. Considering the GWP100 of CH4, the net radiative forcing on climate increased 21% over the same time. In conclusion, reduced C compounds in these environments have high importance for both the annual C balance and climate.
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38.
  • Caffin, Mathieu, et al. (author)
  • N-2 fixation as a dominant new N source in the western tropical South Pacific Ocean (OUTPACE cruise)
  • 2018
  • In: Biogeosciences. - : Copernicus GmbH. - 1726-4170 .- 1726-4189. ; 15:8, s. 2565-2585
  • Journal article (peer-reviewed)abstract
    • We performed nitrogen (N) budgets in the photic layer of three contrasting stations representing different trophic conditions in the western tropical South Pacific (WTSP) Ocean during austral summer conditions (FebruaryMarch 2015). Using a Lagrangian strategy, we sampled the same water mass for the entire duration of each long-duration (5 days) station, allowing us to consider only vertical exchanges for the budgets. We quantified all major vertical N fluxes both entering (N-2 fixation, nitrate turbulent diffusion, atmospheric deposition) and leaving the photic layer (particulate N export). The three stations were characterized by a strong nitracline and contrasted deep chlorophyll maximum depths, which were lower in the oligotrophic Melanesian archipelago (MA, stations LD A and LD B) than in the ultra-oligotrophic waters of the South Pacific Gyre (SPG, station LD C). N-2 fixation rates were extremely high at both LD A (593 +/- 51 mu mol N m(-2) d(-1)) and LD B (706 +/- 302 mu mol N m(-2)d(-1)), and the diazotroph community was dominated by Trichodesmium. N-2 fixation rates were lower (59 +/- 16 mu mol N m(-2) d(-1)) at LD C, and the diazotroph community was dominated by unicellular N-2-fixing cyanobacteria (UCYN). At all stations, N-2 fixation was the major source of new N (> 90 %) before atmospheric deposition and upward nitrate fluxes induced by turbulence. N-2 fixation contributed circa 1318 % of primary production in the MA region and 3 in the SPG water and sustained nearly all new primary production at all stations. The e ratio (e ratio articulate carbon export / primary production) was maximum at LD A (9.7 ) and was higher than the e ratio in most studied oligotrophic regions (< 5), indicating a high efficiency of the WTSP to export carbon relative to primary production. The direct export of diazotrophs assessed by qPCR of the nifH gene in sediment traps represented up to 30.6 of the PC export at LD A, while their contribution was 5 and < 0.1 % at LD B and LD C, respectively. At the three studied stations, the sum of all N input to the photic layer exceeded the N output through organic matter export. This disequilibrium leading to N accumulation in the upper layer appears as a characteristic of the WTSP during the summer season.
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39.
  • Casetou, Sophie, et al. (author)
  • Current, steady-state and historical weathering rates of base cations at two forest sites in northern and southern Sweden: a comparison of three methods
  • 2020
  • In: Biogeosciences. - : Copernicus GmbH. - 1726-4170 .- 1726-4189. ; 17, s. 281-304
  • Journal article (peer-reviewed)abstract
    • Reliable and accurate methods for estimating soil mineral weathering rates are required tools in evaluating the sustainability of increased harvesting of forest biomass and assessments of critical loads of acidity. A variety of methods that differ in concept, temporal and spatial scale, and data requirements are available for measuring weathering rates. In this study, causes of discrepancies in weathering rates between methods were analysed and were classified as being either conceptual (inevitable) or random. The release rates of base cations (BCs; Ca, Mg, K, Na) by weathering were estimated in podzolised glacial tills at two experimental forest sites, Asa and Flakaliden, in southern and northern Sweden, respectively. Three different methods were used: (i) historical weathering since deglaciation estimated by the depletion method, using Zr as the assumed inert reference; (ii) steady-state weathering rate estimated with the PROFILE model, based on quantitative analysis of soil mineralogy; and (iii) BC budget at stand scale, using measured deposition, leaching and changes in base cation stocks in biomass and soil over a period of 12 years. In the 050 cm soil horizon historical weathering of BCs was 10.6 and 34.1 mmolc m(-2) yr(-1), at Asa and Flakaliden, respectively. Corresponding values of PROFILE weathering rates were 37.1 and 42.7 mmolc m(-2) yr(-1). The PROFILE results indi- cated that steady-state weathering rate increased with soil depth as a function of exposed mineral surface area, reaching a maximum rate at 80 cm (Asa) and 60 cm (Flakaliden). In contrast, the depletion method indicated that the largest postglacial losses were in upper soil horizons, particularly at Flakaliden.With the exception of Mg and Ca in shallow soil horizons, PROFILE produced higher weathering rates than the depletion method, particularly of K and Na in deeper soil horizons. The lower weathering rates of the depletion method were partly explained by natural and anthropogenic variability in Zr gradients. The base cation budget approach produced significantly higher weathering rates of BCs, 134.6 mmolc m(-2) yr(-1) at Asa and 73.2 mmolc m(-2) yr(-1) at Flakaliden, due to high rates estimated for the nutrient elements Ca, Mg and K, whereas weathering rates were lower and similar to those for the depletion method (6.6 and 2.2 mmolc m(-2) yr(-1) at Asa and Flakaliden). The large discrepancy in weathering rates for Ca, Mg and K between the base cation budget approach and the other methods suggests additional sources for tree uptake in the soil not captured by measurements.
  •  
40.
  • Casetou, Sophie, et al. (author)
  • The importance of mineral determinations to PROFILE base cation weathering release rates : A case study
  • 2019
  • In: Biogeosciences. - : Copernicus GmbH. - 1726-4170 .- 1726-4189. ; 16:9, s. 1903-1920
  • Journal article (peer-reviewed)abstract
    • Accurate estimates of base cation weathering rates in forest soils are crucial for policy decisions on sustainable biomass harvest levels and for calculations of critical loads of acidity. The PROFILE model is one of the most frequently used methods to quantify weathering rates, where the quantitative mineralogical input has often been calculated by the A2M ("Analysis to Mineralogy") program based solely on geochemical data. The aim of this study was to investigate how uncertainties in quantitative mineralogy, originating from modeled mineral abundance and assumed stoichiometry, influence PROFILE weathering estimate, by using measured quantitative mineralogy by X-ray powder diffraction (XRPD) as a reference. Weathering rates were determined for two sites, one in northern (Flakaliden) and one in southern (Asa) Sweden. At each site, 3-4 soil profiles were analyzed at 10cm depth intervals. Normative quantitative mineralogy was calculated from geochemical data and qualitative mineral data with the A2M program using two sets of qualitative mineralogical data inputs to A2M: (1) a site-specific mineralogy based on information about mineral identification and mineral chemical composition as determined directly by XRPD and electron microprobe analysis (EMPA), and (2) regional mineralogy, representing the assumed minerals present and assumed mineral chemical compositions for large geographical areas in Sweden, as per previous published studies. Arithmetic means of the weathering rates determined from A2M inputs (W A2M ) were generally in relatively close agreement with those (W XRPD ) determined by inputs based on direct XRPD and EMPA measurements. The hypothesis that using site-specific instead of regional mineralogy will improve the confidence in mineral data input to PROFILE was supported for Flakaliden. However, at Asa, site-specific mineralogies reduced the discrepancy for Na between W A2M and W XRPD but produced larger and significant discrepancies for K, Ca and Mg. For Ca and Mg the differences between weathering rates based on different mineralogies could be explained by differences in the content of some specific Ca-and Mg-bearing minerals, in particular amphibole, apatite, pyroxene and illite. Improving the accuracy in the determination of these minerals would reduce weathering uncertainties. High uncertainties in mineralogy, due for example to different A2M assumptions, had surprisingly little effect on the predicted weathering of Na-and K-bearing minerals. This can be explained by the fact that the weathering rate constants for the minerals involved, e.g. K feldspar and micas, are similar in PROFILE. Improving the description of the dissolution rate kinetics of the plagioclase mineral group as well as major K-bearing minerals (K feldspars and micas) should be a priority to help improve future weathering estimates with the PROFILE model.
  •  
41.
  • Casini, Michele, et al. (author)
  • Changes in population depth distribution and oxygen stratification are involved in the current low condition of the eastern Baltic Sea cod (Gadus morhua)
  • 2021
  • In: Biogeosciences. - : Copernicus GmbH. - 1726-4170 .- 1726-4189. ; 18, s. 1321-1331
  • Journal article (peer-reviewed)abstract
    • During the past 20 years, hypoxic areas have expanded rapidly in the Baltic Sea, which has become one of the largest marine "dead zones" in the world. At the same time, the most important commercial fish population of the region, the eastern Baltic cod, has experienced a drastic reduction in mean body condition, but the processes behind the relation between deoxygenation and condition remain elusive. Here we use extensive long-term monitoring data on cod biology and distribution as well as on hydrological variations to investigate the processes that relate deoxygenation and cod condition during the autumn season. Our results show that the depth distribution of cod has increased during the past 4 decades at the same time of the expansion, and shallowing, of waters with oxygen concentrations detrimental to cod performance. This has resulted in a progressively increasing spatial overlap between the cod population and low-oxygenated waters after the mid-1990s. This spatial overlap and the actual oxygen concentration experienced by cod therein statistically explained a large proportion of the changes in cod condition over the years. These results complement previous analyses on fish otolith microchemistry that also revealed that since the mid-1990s, cod individuals with low condition were exposed to low-oxygen waters during their life. This study helps to shed light on the processes that have led to a decline of the eastern Baltic cod body condition, which can aid the management of this population currently in distress. Further studies should focus on understanding why the cod population has moved to deeper waters in autumn and on analyzing the overlap with low-oxygen waters in other seasons to quantify the potential effects of the variations in physical properties on cod biology throughout the year.
  •  
42.
  • Castro-Morales, Karel, et al. (author)
  • Year-round simulated methane emissions from a permafrost ecosystem in Northeast Siberia
  • 2018
  • In: Biogeosciences. - : Copernicus GmbH. - 1726-4170 .- 1726-4189. ; 15:9, s. 2691-2722
  • Journal article (peer-reviewed)abstract
    • Wetlands of northern high latitudes are ecosystems highly vulnerable to climate change. Some degradation effects include soil hydrologic changes due to permafrost thaw, formation of deeper active layers, and rising topsoil temperatures that accelerate the degradation of permafrost carbon and increase in CO2 and CH4 emissions. In this work we present 2 years of modeled year-round CH4 emissions into the atmosphere from a Northeast Siberian region in the Russian Far East. We use a revisited version of the process-based JSBACH-methane model that includes four CH4 transport pathways: plant-mediated transport, ebullition and molecular diffusion in the presence or absence of snow. The gas is emitted through wetlands represented by grid cell inundated areas simulated with a TOPMODEL approach. The magnitude of the summertime modeled CH4 emissions is comparable to ground-based CH4 fluxes measured with the eddy covariance technique and flux chambers in the same area of study, whereas wintertime modeled values are underestimated by 1 order of magnitude. In an annual balance, the most important mechanism for transport of methane into the atmosphere is through plants (61 %). This is followed by ebullition (similar to 35 %), while summertime molecular diffusion is negligible (0.02 %) compared to the diffusion through the snow during winter (similar to 4 %). We investigate the relationship between temporal changes in the CH4 fluxes, soil temperature, and soil moisture content. Our results highlight the heterogeneity in CH4 emissions at landscape scale and suggest that further improvements to the representation of large-scale hydrological conditions in the model will facilitate a more process-oriented land surface scheme and better simulate CH4 emissions under climate change. This is especially necessary at regional scales in Arctic ecosystems influenced by permafrost thaw.
  •  
43.
  • Chadburn, Sarah E., et al. (author)
  • Carbon stocks and fluxes in the high latitudes : using site-level data to evaluate Earth system models
  • 2017
  • In: Biogeosciences. - : Copernicus GmbH. - 1726-4170 .- 1726-4189. ; 14:22, s. 5143-5169
  • Journal article (peer-reviewed)abstract
    • It is important that climate models can accurately simulate the terrestrial carbon cycle in the Arctic due to the large and potentially labile carbon stocks found in permafrost-affected environments, which can lead to a positive climate feedback, along with the possibility of future carbon sinks from northward expansion of vegetation under climate warming. Here we evaluate the simulation of tundra carbon stocks and fluxes in three land surface schemes that each form part of major Earth system models (JSBACH, Germany; JULES, UK; ORCHIDEE, France). We use a site-level approach in which comprehensive, high-frequency datasets allow us to disentangle the importance of different processes. The models have improved physical permafrost processes and there is a reasonable correspondence between the simulated and measured physical variables, including soil temperature, soil moisture and snow. We show that if the models simulate the correct leaf area index (LAI), the standard C3 photosynthesis schemes produce the correct order of magnitude of carbon fluxes. Therefore, simulating the correct LAI is one of the first priorities. LAI depends quite strongly on climatic variables alone, as we see by the fact that the dynamic vegetation model can simulate most of the differences in LAI between sites, based almost entirely on climate inputs. However, we also identify an influence from nutrient limitation as the LAI becomes too large at some of the more nutrient-limited sites. We conclude that including moss as well as vascular plants is of primary importance to the carbon budget, as moss contributes a large fraction to the seasonal CO2 flux in nutrient-limited conditions. Moss photosynthetic activity can be strongly influenced by the moisture content of moss, and the carbon uptake can be significantly different from vascular plants with a similar LAI. The soil carbon stocks depend strongly on the rate of input of carbon from the vegetation to the soil, and our analysis suggests that an improved simulation of photosynthesis would also lead to an improved simulation of soil carbon stocks. However, the stocks are also influenced by soil carbon burial (e.g. through cryoturbation) and the rate of heterotrophic respiration, which depends on the soil physical state. More detailed below-ground measurements are needed to fully evaluate biological and physical soil processes. Furthermore, even if these processes are well modelled, the soil carbon profiles cannot resemble peat layers as peat accumulation processes are not represented in the models. Thus, we identify three priority areas for model development: (1) dynamic vegetation including (a) climate and (b) nutrient limitation effects; (2) adding moss as a plant functional type; and an (3) improved vertical profile of soil carbon including peat processes.
  •  
44.
  • Chang, Kuang-Yu, et al. (author)
  • Hysteretic temperature sensitivity of wetland CH4 fluxes explained by substrate availability and microbial activity
  • 2020
  • In: Biogeosciences. - : Copernicus GmbH. - 1726-4170 .- 1726-4189. ; 17:22, s. 5849-5860
  • Journal article (peer-reviewed)abstract
    • Methane (CH4) emissions from wetlands are likely increasing and important in global climate change assessments. However, contemporary terrestrial biogeochemical model predictions of CH4 emissions are very uncertain, at least in part due to prescribed temperature sensitivity of CH4 production and emission. While statistically consistent apparent CH4 emission temperature dependencies have been inferred from meta-analyses across microbial to ecosystem scales, year-round ecosystem-scale observations have contradicted that finding. Here, we show that apparent CH4 emission temperature dependencies inferred from year-round chamber measurements exhibit substantial intra-seasonal variability, suggesting that using static temperature relations to predict CH4 emissions is mechanistically flawed. Our model results indicate that such intra-seasonal variability is driven by substrate-mediated microbial and abiotic interactions: seasonal cycles in substrate availability favors CH4 production later in the season, leading to hysteretic temperature sensitivity of CH4 production and emission. Our findings demonstrate the uncertainty of inferring CH4 emission or production rates from temperature alone and highlight the need to represent microbial and abiotic interactions in wetland biogeochemical models.
  •  
45.
  • Charkin, A. N., et al. (author)
  • Seasonal and interannual variability of sedimentation and organic matter distribution in the Buor-Khaya Gulf : the primary recipient of input from Lena River and coastal erosion in the southeast Laptev Sea
  • 2011
  • In: Biogeosciences. - : Copernicus GmbH. - 1726-4170 .- 1726-4189. ; 8:9, s. 2581-2594
  • Journal article (peer-reviewed)abstract
    • Climate warming is amplified in the land-sea system of the East Siberian Arctic, which also holds large pools of vulnerable carbon in permafrost. This coastal area is strongly influenced by sediment and carbon transport from both its large rivers and extensive erosion of Pleistocene permafrost along its coastline. This study is investigating the coastal fate of the sediment and organic carbon delivered to the Buor-Khaya Gulf, which is the first recipient of the overwhelming fluvial discharge from the Lena River and is additionally receiving large input from extensive erosion of the coastal ice-complex (permafrost a. k.a. Yedoma; loess soil with high organic carbon content). Both water column suspended particulate matter (SPM) and surface sediments were sampled at about 250 oceanographic stations in the Gulf in this multi-year effort, including one winter campaign, and analyzed for the distribution and sorting of sediment size, organic carbon content, and stable carbon isotope signals. The composition of the surface sediment suggests an overwhelmingly terrestrial contribution from both river and coastal erosion. The objective of this paper is to improve our understanding of the seasonal (i.e., winter vs summer) and interannual variability of these coastal sedimentation processes and the dynamics of organic carbon (OC) distribution in both the water column SPM and the surface sediments of the Buor-Khaya Gulf. Based on data collected during several years in the period 2000-2008, two different sedimentation regimes were revealed for the Buor-Khaya Gulf, the relative importance of each at a given time depend on hydrometeorological conditions, the Lena River water discharge and sea-ice regime: Type 1 erosion-accumulation and Type 2 accumulation. The Type 1 erosion-accumulation sedimentation regime is typical (2000-2006) for the ice-free period of the year (here considered in detail for August 2005). Under such conditions terrigenous sources of SPM and particulate organic carbon (POC) stem predominantly from river discharge, thermal erosion of coastal ice-complex and remobilized bottom sediments. The Type 2 accumulation sedimentation regime develops under ice-covered conditions, and only occasionally during the ice-free period (August 2008). In Type 2 winter, combined terrigenous and marine-biogenic SPM and POC sources are dominating due to relatively low overall terrigenous input (April 2007). In Type 2 summer, river alluvium becomes the major SPM and POC source (August 2008). The water column SPM and POC loadings vary by more than a factor of two between the two regimes. This study underscores the necessity of multi-year investigations to better understand the functioning of the primary recipient of terrestrially expulsed matter in the East Siberian Arctic.
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46.
  • Charrieau, Laurie, et al. (author)
  • Rapid environmental responses to climate-induced hydrographic changes in the Baltic Sea entrance
  • 2019
  • In: Biogeosciences. - : Copernicus GmbH. - 1726-4189 .- 1726-4170. ; 16, s. 3835-3852
  • Journal article (peer-reviewed)abstract
    • The Öresund (the Sound), which is a part of the Danish straits, is linking the marine North Sea and the brackish Baltic Sea. It is a transition zone where ecosystems are subjected to large gradients in terms of salinity, temperature, carbonate chemistry, and dissolved oxygen concentration. In addition to the highly variable environmental conditions, the area is responding to anthropogenic disturbances in e.g. nutrient loading, temperature, and pH. We have reconstructed environmental changes in the Öresund during the last c. 200 years, and especially dissolved oxygen concentration, salinity, organic matter content, and pollution levels, using benthic foraminifera and sediment geochemistry. Five zones with characteristic foraminiferal assemblages were identified, each reflecting the environmental conditions for respective period. The largest changes occurred ~ 1950, when the foraminiferal assemblage shifted from a low diversity fauna, dominated by the species Stainforthia fusiformis to higher diversity and abundance, and dominance of the Elphidium group. Concurrently, the grain-size distribution shifted from clayey – to more sandy sediment. To explore the causes for the environmental changes, we used time-series of reconstructed wind conditions coupled with large-scale climate variations as recorded by the NAO index, as well as the ECOSMO II model of currents in the Öresund area. The results indicate increased changes in the water circulation towards stronger currents in the area since the 1950's. The foraminiferal fauna responded quickly (< 10 years) to the environmental changes. Notably, when the wind conditions, and thereby the current system, returned in the 1980's to the previous pattern, the foraminiferal species assemblage did not rebound, but the foraminiferal faunas rather displayed a new equilibrium state.
  •  
47.
  • Chaudhary, Nitin, et al. (author)
  • Modelling Holocene peatland dynamics with an individual-based dynamic vegetation model
  • 2017
  • In: Biogeosciences. - : Copernicus GmbH. - 1726-4170 .- 1726-4189. ; 14:10, s. 2571-2596
  • Journal article (peer-reviewed)abstract
    • Dynamic global vegetation models (DGVMs) are designed for the study of past, present and future vegetation patterns together with associated biogeochemical cycles and climate feedbacks. However, most DGVMs do not yet have detailed representations of permafrost and non-permafrost peatlands, which are an important store of carbon, particularly at high latitudes. We demonstrate a new implementation of peatland dynamics in a customized "Arctic" version of the LPJ-GUESS DGVM, simulating the long-term evolution of selected northern peatland ecosystems and assessing the effect of changing climate on peatland carbon balance. Our approach employs a dynamic multi-layer soil with representation of freeze-thaw processes and litter inputs from a dynamically varying mixture of the main peatland plant functional types: mosses, shrubs and graminoids. The model was calibrated and tested for a sub-Arctic mire in Stordalen, Sweden, and validated at a temperate bog site in Mer Bleue, Canada. A regional evaluation of simulated carbon fluxes, hydrology and vegetation dynamics encompassed additional locations spread across Scandinavia. Simulated peat accumulation was found to be generally consistent with published data and the model was able to capture reported long-term vegetation dynamics, water table position and carbon fluxes. A series of sensitivity experiments were carried out to investigate the vulnerability of high-latitude peatlands to climate change. We found that the Stordalen mire may be expected to sequester more carbon in the first half of the 21st century due to milder and wetter climate conditions, a longer growing season, and the CO2 fertilization effect, turning into a carbon source after mid-century because of higher decomposition rates in response to warming soils.
  •  
48.
  • Chaudhary, Nitin, et al. (author)
  • Modelling past, present and future peatland carbon accumulation across the pan-Arctic region
  • 2017
  • In: Biogeosciences. - : Copernicus GmbH. - 1726-4170 .- 1726-4189. ; 14:18, s. 4023-4044
  • Journal article (peer-reviewed)abstract
    • Most northern peatlands developed during the Holocene, sequestering large amounts of carbon in terrestrial ecosystems. However, recent syntheses have highlighted the gaps in our understanding of peatland carbon accumulation. Assessments of the long-Term carbon accumulation rate and possible warming-driven changes in these accumulation rates can therefore benefit from process-based modelling studies. We employed an individual-based dynamic global ecosystem model with dynamic peatland and permafrost functionalities and patch-based vegetation dynamics to quantify long-Term carbon accumulation rates and to assess the effects of historical and projected climate change on peatland carbon balances across the pan-Arctic region. Our results are broadly consistent with published regional and global carbon accumulation estimates. A majority of modelled peatland sites in Scandinavia, Europe, Russia and central and eastern Canada change from carbon sinks through the Holocene to potential carbon sources in the coming century. In contrast, the carbon sink capacity of modelled sites in Siberia, far eastern Russia, Alaska and western and northern Canada was predicted to increase in the coming century. The greatest changes were evident in eastern Siberia, north-western Canada and in Alaska, where peat production hampered by permafrost and low productivity due the cold climate in these regions in the past was simulated to increase greatly due to warming, a wetter climate and higher CO2 levels by the year 2100. In contrast, our model predicts that sites that are expected to experience reduced precipitation rates and are currently permafrost free will lose more carbon in the future.
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49.
  •  
50.
  • Choquel, Constance, et al. (author)
  • Denitrification by benthic foraminifera and their contribution to N-loss from a fjord environment
  • 2021
  • In: Biogeosciences. - : Copernicus GmbH. - 1726-4170 .- 1726-4189. ; 18:1, s. 327-341
  • Journal article (peer-reviewed)abstract
    • Oxygen and nitrate availabilities impact the marine nitrogen cycle at a range of spatial and temporal scales. Here, we demonstrate the impact of denitrifying foraminifera on the nitrogen cycle at two oxygen and nitrate contrasting stations in a fjord environment (Gullmar Fjord, Sweden). Denitrification by benthic foraminifera was determined through the combination of specific density counting per microhabitat and specific nitrate respiration rates obtained through incubation experiments using N2O microsensors. Benthic nitrate removal was calculated from submillimeter chemical gradients extracted from 2D porewater images of the porewater nitrate concentration. These were acquired by combining the DET technique (diffusive equilibrium in thin film) with chemical colorimetry and hyperspectral imagery. Sediments with high nitrate concentrations in the porewater and oxygenated overlying water were dominated by the non-indigenous species (NIS) Nonionella sp. T1. Denitrification by this species could account for 50 %-100 % of the nitrate loss estimated from the nitrate gradients. In contrast sediments below hypoxic bottom waters had low inventories of porewater nitrate, and denitrifying foraminifera were rare. Their contribution to benthic nitrate removal was negligible (< 5 %). Our study showed that benthic foraminifera can be a major contributor to nitrogen mitigation in oxic coastal ecosystems and should be included in ecological and diagenetic models aiming to understand biogeochemical cycles coupled to nitrogen.
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Karlsson, Jan, 1974- (5)
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Nemitz, E. (4)
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Sierra, Carlos (4)
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Wang, Ying Ping (4)
Wallander, Håkan (4)
Manzoni, Stefano (4)
Hall, Per, 1954 (4)
Conley, Daniel J. (4)
Ingri, Johan (4)
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Swedish Museum of Natural History (3)
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