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- Buchanan, E. M., et al.
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The Psychological Science Accelerator's COVID-19 rapid-response dataset
- 2023
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In: Scientific Data. - : Springer Science and Business Media LLC. - 2052-4463. ; 10:1
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Journal article (peer-reviewed)abstract
- In response to the COVID-19 pandemic, the Psychological Science Accelerator coordinated three large-scale psychological studies to examine the effects of loss-gain framing, cognitive reappraisals, and autonomy framing manipulations on behavioral intentions and affective measures. The data collected (April to October 2020) included specific measures for each experimental study, a general questionnaire examining health prevention behaviors and COVID-19 experience, geographical and cultural context characterization, and demographic information for each participant. Each participant started the study with the same general questions and then was randomized to complete either one longer experiment or two shorter experiments. Data were provided by 73,223 participants with varying completion rates. Participants completed the survey from 111 geopolitical regions in 44 unique languages/dialects. The anonymized dataset described here is provided in both raw and processed formats to facilitate re-use and further analyses. The dataset offers secondary analytic opportunities to explore coping, framing, and self-determination across a diverse, global sample obtained at the onset of the COVID-19 pandemic, which can be merged with other time-sampled or geographic data.
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- Pastur, G. J. M., et al.
(author)
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Landscape Variables Influence over Active Restoration Strategies of Nothofagus Forests Degraded by Invasive Castor canadensis in Tierra del Fuego
- 2021
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In: Sustainability. - : MDPI AG. - 2071-1050. ; 13:14
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Journal article (peer-reviewed)abstract
- North American beavers (Castor canadensis) are responsible for the major changes in the Tierra del Fuego Archipelago, altering riparian forests for the long-term. Passive restoration of the areas affected was ineffective in the medium-term (up to 20 years), being necessary active strategies. Plantations in abandoned ponds were made with Nothofagus pumilio and N. antarctica tree species across Tierra del Fuego island (Argentina). In the first experiment, we analysed the influence of biotic and abiotic factors in three micro-habitats in the impacted areas: front and tail of ponds, and cut not-flooded forest areas. Five-years-old N. pumilio seedlings had 39% survival in front, 21% in tails, and 46% in cut areas at year-3 of the restoration experiments, being negatively influenced by plant cover and soil moisture. Lower growth was recorded during year-1 (0.7-0.9 cm yr(-1)), but increased on time (1.9 cm yr(-1) front, 1.6 cm yr(-1) tail, 4.3 cm yr(-1) cut areas). A second experiment explores the alternative to substitute the tree species to face the harder conditions of the impact and climate change. For this, we conducted a new plantation at four locations across the main bioclimatic zones, where 10-40 cm N. antarctica plants attained 17% survival in meadows (front and tail) and 30% in cut areas, being higher with larger than smaller plants (25% vs. 18%), and where they are mainly influenced by rainfall (4% in sites 400 mm yr(-1)). The main damage was detected in the above-ground biomass due to dryness, but root survival allowed the emergence of new shoots in the following growing season. It is necessary to monitor different Nothofagus species across natural environments in the landscape to determine the feasibility and effectiveness of different strategies in restoration plans, considering the selection of climate-resilient tree species.
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- Claesson, Elin, 1989, et al.
(author)
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The primary structural photoresponse of phytochrome proteins captured by a femtosecond X-ray laser
- 2020
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In: eLife. - 2050-084X. ; 9
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Journal article (peer-reviewed)abstract
- Phytochrome proteins control the growth, reproduction, and photosynthesis of plants, fungi, and bacteria. Light is detected by a bilin cofactor, but it remains elusive how this leads to activation of the protein through structural changes. We present serial femtosecond X-ray crystallographic data of the chromophore-binding domains of a bacterial phytochrome at delay times of 1 ps and 10 ps after photoexcitation. The data reveal a twist of the D-ring, which leads to partial detachment of the chromophore from the protein. Unexpectedly, the conserved so-called pyrrole water is photodissociated from the chromophore, concomitant with movement of the A-ring and a key signaling aspartate. The changes are wired together by ultrafast backbone and water movements around the chromophore, channeling them into signal transduction towards the output domains. We suggest that the observed collective changes are important for the phytochrome photoresponse, explaining the earliest steps of how plants, fungi and bacteria sense red light.
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- Cellini, Andrea, 1991, et al.
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Structural basis of the radical pair state in photolyases and cryptochromes
- 2022
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In: Chemical Communications. - : Royal Society of Chemistry (RSC). - 1359-7345 .- 1364-548X. ; , s. 4889-4892
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Journal article (peer-reviewed)abstract
- We present the structure of a photoactivated animal (6-4) photolyase in its radical pair state, captured by serial crystallography. We observe how a conserved asparigine moves towards the semiquinone FAD chromophore and stabilizes it by hydrogen bonding. Several amino acids around the final tryptophan radical rearrange, opening it up to the solvent. The structure explains how the protein environment stabilizes the radical pair state, which is crucial for function of (6-4) photolyases and cryptochromes.
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- Cellini, Andrea, 1991, et al.
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The three-dimensional structure of Drosophila melanogaster (6-4) photolyase at room temperature
- 2021
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In: Acta Crystallographica Section D-Structural Biology. - : International Union of Crystallography (IUCr). - 2059-7983. ; 77, s. 1001-1009
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Journal article (peer-reviewed)abstract
- (6-4) photolyases are flavoproteins that belong to the photolyase/cryptochrome family. Their function is to repair DNA lesions using visible light. Here, crystal structures of Drosophila melanogaster (6-4) photolyase [Dm(6-4)photolyase] at room and cryogenic temperatures are reported. The room-temperature structure was solved to 2.27 angstrom resolution and was obtained by serial femtosecond crystallography (SFX) using an X-ray free-electron laser. The crystallization and preparation conditions are also reported. The cryogenic structure was solved to 1.79 angstrom resolution using conventional X-ray crystallography. The structures agree with each other, indicating that the structural information obtained from crystallography at cryogenic temperature also applies at room temperature. Furthermore, UV-Vis absorption spectroscopy confirms that Dm(6-4)photolyase is photoactive in the crystals, giving a green light to time-resolved SFX studies on the protein, which can reveal the structural mechanism of the photoactivated protein in DNA repair.
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- Valentini, Vincenzo, et al.
(author)
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Multidisciplinary Rectal Cancer Management : 2nd European Rectal Cancer Consensus Conference (EURECA-CC2)
- 2009
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In: Radiotherapy and Oncology. - : Elsevier BV. - 0167-8140 .- 1879-0887. ; 92:2, s. 148-163
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Research review (peer-reviewed)abstract
- BACKGROUND AND PURPOSE: During the first decade of the 21st century a number of important European randomized studies were published. In order to help shape clinical practice based on best scientific evidence from the literature, the International Conference on 'Multidisciplinary Rectal Cancer Treatment: Looking for an European Consensus' (EURECA-CC2) was organized in Italy under the endorsement of European Society of Medical Oncology (ESMO), European Society of Surgical Oncology (ESSO), and European Society of Therapeutic Radiation Oncology (ESTRO). METHODS: Consensus was achieved using the Delphi method. The document was available to all Committee members as a web-based document customized for the consensus process. Eight chapters were identified: epidemiology, diagnostics, pathology, surgery, radiotherapy and chemotherapy, treatment toxicity and quality of life, follow-up, and research questions. Each chapter was subdivided by a topic, and a series of statements were developed. Each member commented and voted, sentence by sentence thrice. Sentences upon which an agreement was not reached after voting round # 2 were openly debated during a Consensus Conference in Perugia (Italy) from 11 December to 13 December 2008. A hand-held televoting system collected the opinions of both the Committee members and the audience after each debate. The Executive Committee scored percentage consensus based on three categories: "large consensus", "moderate consensus", and "minimum consensus". RESULTS: The total number of the voted sentences was 207. Of the 207, 86% achieved large consensus, 13% achieved moderate consensus, and only 3 (1%) resulted in minimum consensus. No statement was disagreed by more than 50% of the members. All chapters were voted on by at least 75% of the members, and the majority was voted on by >85%. CONCLUSIONS: This Consensus Conference represents an expertise opinion process that may help shape future programs, investigational protocols, and guidelines for staging and treatment of rectal cancer throughout Europe.
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