| 1. |
- Agostoni, Angelo, et al.
(author)
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Hereditary and acquired angioedema: problems and progress: proceedings of the third C1 esterase inhibitor deficiency workshop and beyond
- 2004
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In: Journal of Allergy and Clinical Immunology. - : Elsevier BV. - 1097-6825 .- 0091-6749. ; 114:3 Suppl, s. 51-131
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Journal article (peer-reviewed)abstract
- Hereditary angioedema (HAE), a rare but life-threatening condition, manifests as acute attacks of facial, laryngeal, genital, or peripheral swelling or abdominal pain secondary to intra-abdominal edema. Resulting from mutations affecting C1 esterase inhibitor (C1-INH), inhibitor of the first complement system component, attacks are not histamine-mediated and do not respond to antihistamines or corticosteroids. Low awareness and resemblance to other disorders often delay diagnosis; despite availability of C1-INH replacement in some countries, no approved, safe acute attack therapy exists in the United States. The biennial C1 Esterase Inhibitor Deficiency Workshops resulted from a European initiative for better knowledge and treatment of HAE and related diseases. This supplement contains work presented at the third workshop and expanded content toward a definitive picture of angioedema in the absence of allergy. Most notably, it includes cumulative genetic investigations; multinational laboratory diagnosis recommendations; current pathogenesis hypotheses; suggested prophylaxis and acute attack treatment, including home treatment; future treatment options; and analysis of patient subpopulations, including pediatric patients and patients whose angioedema worsened during pregnancy or hormone administration. Causes and management of acquired angioedema and a new type of angioedema with normal C1-INH are also discussed. Collaborative patient and physician efforts, crucial in rare diseases, are emphasized. This supplement seeks to raise awareness and aid diagnosis of HAE, optimize treatment for all patients, and provide a platform for further research in this rare, partially understood disorder.
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| 2. |
- Jarenmark, Martin, et al.
(author)
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Unsymmetrical dizinc complexes as models for the active sites of phosphohydrolases.
- 2010
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In: Dalton Transactions. - : Royal Society of Chemistry (RSC). - 1477-9234 .- 1477-9226. ; 39:35, s. 8183-8194
-
Journal article (peer-reviewed)abstract
- The unsymmetrical dinucleating ligand 2-(N-isopropyl-N-((2-pyridyl)methyl)aminomethyl)-6-(N-(carboxylmethyl)-N-((2-pyridyl)methyl)aminomethyl)-4-methylphenol (IPCPMP or L) has been synthesized to model the active site environment of dinuclear metallohydrolases. It has been isolated as the hexafluorophosphate salt H(4)IPCPMP(PF(6))(2).2H(2)O (H(4)L), which has been structurally characterized, and has been used to form two different Zn(ii) complexes, [{Zn(2)(IPCPMP)(OAc)}(2)][PF(6)](2) () and [{Zn(2)(IPCPMP)(Piv)}(2)][PF(6)](2) () (OAc = acetate; Piv = pivalate). The crystal structures of and show that they consist of tetranuclear complexes with very similar structures. Infrared spectroscopy and mass spectrometry indicate that the tetranuclear complexes dissociate into dinuclear complexes in solution. Potentiometric studies of the Zn(ii) : IPCPMP system in aqueous solution reveal that a mononuclear complex is surprisingly stable at low pH, even at a 2 : 1 Zn(ii) : L ratio, but a dinuclear complex dominates at high pH and transforms into a dihydroxido complex by a cooperative deprotonation of two, probably terminally coordinated, water molecules. A kinetic investigation indicates that one of these hydroxides is the active nucleophile in the hydrolysis of bis(2,4-dinitrophenyl)phosphate (BDNPP) enhanced by complex , and mechanistic proposals are presented for this reaction as well as the previously reported transesterification of 2-hydroxypropyl p-nitrophenyl phosphate (HPNP) promoted by Zn(ii) complexes of IPCPMP.
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| 3. |
- Kondratiuk, Serhii, et al.
(author)
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Contributions to molecular phylogeny of lichens 4. New names in the Teloschistaceae
- 2022
-
In: Acta Botanica Hungarica. - : Akademiai Kiado Zrt.. - 1588-2578 .- 0236-6495. ; 64:3-4, s. 313-336
-
Journal article (peer-reviewed)abstract
- The new genus Kudratoviella for the former Caloplaca zeorina group having the highest level of bootstrap support in the phylogenetic tree of the Teloschistaceae, based on combined dataset of nrITS, 28S nrLSU DNA and 12S SSU mtDNA sequences, which does not belong to any other earlier proposed genera of the subfamily Xanthorioideae, is described. The genus Oceanoplaca Arup, Søchting et Bungartz found to be a new synonym of the genus Loekoeslaszloa S. Y. Kondr., Kärnefelt, A. Thell et Hur, and Villophora onas Søchting, Søgaard et Arup appeared to be new synonym of Raesaeneniana maulensis (S. Y. Kondr. et Hur) S. Y. Kondr., Elix, Kärnefelt et A. Thell. Sixteen new combinations are proposed, i.e. Honeggeria leoncita (for Xanthomendoza leoncita Bungartz et Søchting), Honeggeria wetmorei (for Xanthoria wetmorei S. Y. Kondr. et Kärnefelt), Kudratoviella anularis (for Caloplaca anularis Clauzade et Poelt), Kudratoviella bohlinii (for Caloplaca bohlinii H. Magn.), Kudratoviella rajasthanica (for Caloplaca rajasthanica S. Y. Kondr., Upreti et G. P. Sinha), Kudratoviella scrobiculata (for Caloplaca scrobiculata H. Magn.), and Kudratoviella zeorina (for Caloplaca zeorina B. G. Lee et Hur), Loekoeslaszloa caesioisidiata (for Caloplaca caesioisidiata Arup et van den Boom), Loekoeslaszloa caesiosorediata (for Caloplaca caesiosorediata Arup et van den Boom), Loekoeslaszloa chemoisidiosa (for Oceanoplaca chemoisidiosa Søchting et Bungartz), Loekoeslaszloa isidiosa (for Placodium isidiosum Vain.), Loekoeslaszloa sideritoides (for Oceanoplaca sideritoides Søchting et Bungartz), Raesaeneniana darwiniana (for Villophora darwiniana Søchting, Søgaard et Arup), Raesaeneniana patagonica (for Villophora patagonica Søchting et Søgaard), Raesaeneniana rimicola (for Villophora rimicola Søchting), and Raesaeneniana wallaceana (for Villophora wallaceana Søchting et Søgaard). Iqbalia kashmirensis is for the first time confirmed from South Korea and India on the basis of ‘extraneous mycobiont DNA’ (sensu Kondratyuk et al. 2019 b).
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| 4. |
- Kondratyuk, Sergij, et al.
(author)
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Contributions to Molecular Phylogeny of Lichen-Forming Fungi 2. Review of Current Monophyletic Branches of the Family Physciaceae
- 2021
-
In: Acta Botanica Hungarica. - : Akademiai Kiado Zrt.. - 1588-2578 .- 0236-6495. ; 63:3-4, s. 351-390
-
Journal article (peer-reviewed)abstract
- Seven genera new to science, i.e.: Helmutiopsis, Huriopsis, Johnsheardia, Klauskalbia, Kudratovia, Kurokawia and Poeltonia of the Physciaceae are proposed for the ‘Rinodina’ atrocinerea, the ‘Rinodina’ xanthophaea, the ‘Rinodina’ cinnamomea, the ‘Heterodermia’ obscurata, the ‘Rinodina’ straussii, the ‘Anaptychia’ isidiata and the ‘Physconia’ grisea groups consequently that all form strongly supported monophyletic branches in a phylogeny analysis based on a combined matrix of nrITS and mtSSU sequences. Phylogenetic positions of species belonging to the genera Kashiwadia s. l., Leucodermia, Mischoblastia,Oxnerella, Phaeorrhiza s. l., Polyblastidium and Rinodinella s. l. are discussed. Oxnerella afghanica which for the first time recorded as parasitic lichen species from both epiphytic and saxicolous crustose lichens is designated as type species for the genus Oxnerella. Sequences of the recently described Physcia orientostellaris as well as Huriopsis xanthophaea and additional sequences of Kashiwadia aff. orientalis and Mischoblastia aff. oxydata are submitted to the GenBank. The positions of Polyblastidium casaterrinum from Costa Rica, ‘Rinodina’ efflorescens from Białowieża, Poland, and ‘Mischoblastia’ confragosula from Cambodia in the Physciaceae are confirmed in a phylogeny analysis based on the nrITS sequences. The presence of ‘extraneous mycobiont DNA’ in lichen associations is exemplified with earlier incorrect identifications of Heterodermia, Kashiwadia, Kurokawia,Oxnerella and Poeltonia specimens. Fifty-six new combinations are presented: Helmutiopsis alba (for Rinodina alba Metzler ex Arn.), Helmutiopsis aspersa (for Lecanora aspersa Borrer), Helmutiopsis atrocinerea (for Parmelia atrocinerea Fr.), Huriopsis chrysidiata (for Rinodina chrysidiata Sheard), Huriopsis chrysomelaena (for Rinodina chrysomelaena Tuck.), Huriopsis lepida (for Lecanora lepida Nyl.), Huriopsis luteonigra (for Rinodina luteonigra Zahlbr.), Huriopsis plana (for Rinodina plana H. Magn.), Huriopsis thiomela (for Lecanora thiomela Nyl.), Huriopsis xanthomelana (for Rinodina xanthomelana Müll. Arg.), Huriopsis xanthophaea (for Lecanora xanthophaea Nyl.), Johnsheardia cinnamomea (for Rinodina mniaroea var. cinnamomea Th. Fr.), Johnsheardia herteliana (for Rinodina herteliana Kaschik), Johnsheardia jamesii (for Rinodina jamesii H. Mayrhofer), Johnsheardia reagens (for Rinodina reagens Matzer et H. Mayrhofer), Johnsheardia zwackhiana (for Lecanora zwackhiana Kremp.), Kashiwadia austrostellaris (for Physcia austrostellaris Elix), Kashiwadia jackii (for Physcia jackii Moberg), Kashiwadia littoralis for Physcia littoralis Elix), Kashiwadia nubila (for Physcia nubila Moberg), and Kashiwadia tropica (for Physcia tropica Elix), Klauskalbia crocea (for Heterodermia crocea R. C. Harris), Klauskalbia flabellata (for Parmelia flabellata Fée), Klauskalbia obscurata (for Physcia speciosa (Wulfen) Nyl. *obscurata Nyl.), Klauskalbia paradoxa (for Heterodermia paradoxa Schumm et Schäfer-Verwimp), Kudratovia bohlinii (for Rinodina bohlinii H. Magn.), Kudratovia candidogrisea (for Rinodina candidogrisea Hafellner, Muggia et Obermayer), Kudratovia luridata (for Buellia luridata Körb.), Kudratovia metaboliza (for Rinodina metaboliza Vain.), Kudratovia pycnocarpa (for Rinodina pycnocarpa H. Magn.), Kudratovia roscida (for Lecanora roscida Sommerf.), Kudratovia straussii (for Rinodina straussii J. Steiner), Kudratovia terrestris (for Rinodina terrestris Tomin), Kurokawia bryorum (for Anaptychia bryorum Poelt), Kurokawia isidiata (for Anaptychia isidiata Tomin), Kurokawia mereschkowskii (for Physcia mereschkowskii Tomin), Kurokawia palmulata (for Psoroma palmulatum Michx.), Kurokawia runcinata (for Lichen runcinatus With.), Kurokawia stippea (for Parmelia aquila var. stippea Ach.), Lecania safavidiorum (for Oxnerella safavidiorum S. Y. Kondr., Zarei-Darki, Lőkös et Hur), Leucodermia erinacea (for Lichen erinaceus Ach.), Mischoblastia confragosula (for Lecanora confragosula Nyl.), Mischoblastia destituta (for Lecidea destituta Nyl.), Mischoblastia moziana (for Lecanora moziana Nyl.), Mischoblastia moziana subsp. parasitica (comb. et stat. nova for Rinodina moziana var. parasitica Kaschik et H. Mayrhofer), Mischoblastia ramboldii (for Rinodina ramboldii Kaschik), Mischoblastia vezdae (for Rinodina vezdae H. Mayrhofer), Oxnerella afghanica (for Rinodina afghanica M. Steiner et Poelt), Oxnerella castanomelodes (for Rinodina castanomelodes H. Mayrhofer et Poelt), Physciella nigricans (for Lecanora nigricans Flörke), Poeltonia elegantula (for Physconia elegantula Essl.), Poeltonia grisea (for Lichen griseus Lam.), Poeltonia isidiomuscigena (for Physconia isidiomuscigena Essl.), Poeltonia perisidiosa (for Physcia perisidiosa Erichsen), Poeltonia venusta (for Parmelia venusta Ach.), and Polyblastidium albicans (for Parmelia albicans Pers.) are proposed.
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| 5. |
- Kondratyuk, Sergey, et al.
(author)
-
Contributions to molecular phylogeny of lichens 3. • New monophyletic branches of the Trapeliaceae and Xylariaceae
- 2022
-
In: Acta Botanica Hungarica. - : Akademiai Kiado Zrt.. - 1588-2578 .- 0236-6495. ; 64:1-2, s. 97-135
-
Journal article (peer-reviewed)abstract
- Seven new genera, i.e. Brianiopsis for the former ‘Lambiella’ impavida group, Farkasiella for the former ‘Trapeliopsis’ aeneofusca group, Gallowayiopsis for the former ‘Trapelia’ collaris group, Kleopowiella for the former ‘Trapelia’ placodioides group, Trapegintarasia for the former ‘Trapelia’ lilacea group, Trapejamesia for the former ‘Trapelia’ corticola branch, as well as Xyloelixia for the former ‘Xylographa’ isidiosa group are proposed. Isolated position of ‘Lambiella’ caeca, ‘Lambiella’ insularis, ‘Lambiella’ hepaticicola, ‘Lambiella’ sphacellata, ‘Placopsis’ bicolor, ‘Xylographa’ bjoerkii, and ‘Xylographa’ lagoi, is discussed too. Correctness of identification of vouchers of various species of the following genera Placynthiella, Placopsis, Trapelia, and Trapeliopsis is also discussed. New combinations are proposed for the following 27 species: ‘Ainoa’ sphacellata (for Lecidea sphacelata Th. Fr.), Brianiopsis aliphatica (for Lambiella aliphatica T. Sprib. et Resl), Brianiopsis cerebriformis (for Rimularia cerebriformis Kantvilas), Brianiopsis globulosa (for Rimularia globulosa Coppins), Brianiopsis gyrizans (for Lecidea gyrizans Nyl.), Brianiopsis gyromuscosa (for Rimularia gyromuscosa Aptroot), Brianiopsis impavida (for Lecidea impavida Th. Fr.), Brianiopsis mullensis (for Lecidea mullensis Stirt.), Farkasiella aeneofusca (for Lecidea aeneofusca Flörke ex Flot.), Farkasiella gelatinosa (for Lecidea gelatinosa Flörke), Gallowayiopsis collaris (for Trapelia collaris Orange), Gallowayiopsis glebulosa (for Lichen glebulosus Sm.), Gallowayiopsis obtegens (for Biatora coarctata subsp. obtegens Th. Fr.), Gallowayiopsis roseonigra (for Placopsis roseonigra Brodo), Kleopowiella placodioides (for Trapelia placodioides Coppins et P. James), Kleopowiella bisorediata (for Trapeliopsis bisorediata McCune et F. J. Camacho), Kleopowiella thieleana (for Trapelia thieleana Kantvilas, Lumbsch et Elix), Rimularia coreana (for Trapelia coreana S. Y. Kondr., Lőkös et Hur), Trapegintarasia antarctica (for Trapelia antarctica Ertz, Aptroot, G. Thor et Ovstedal), Trapegintarasia lilacea (for Trapelia lilacea Kantvilas et Elix), Trapegintarasia tristis (for Trapelia tristis Orange), Trapejamesia corticola (for Trapelia corticola Coppins et P. James), Trapejamesia hurii (for Placynthiella hurii S. Y. Kondr. et L. Lőkös), Xyloelixia constricta (for Xylographa constricta T. Sprib.), Xyloelixia disseminata (for Xylographa disseminata Willey), Xyloelixia isidiosa (for Hypocenomyce isidiosa Elix), and Xyloelixia septentrionalis (for Xylographa septentrionalis T. Sprib.).
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| 6. |
- Kondratyuk, Sergey, et al.
(author)
-
New and noteworthy lichen-forming and lichenicolous fungi 7
- 2018
-
In: Acta Botanica Hungarica. - : Akademiai Kiado Zrt.. - 1588-2578 .- 0236-6495. ; 60:1-2, s. 115-115
-
Journal article (peer-reviewed)abstract
- Nineteen new to science species of lichen forming fungi, i.e.: Agonimia ascendens S. Y. Kondr., L. Lőkös et J.-S. Hur, A. sunchonensis S. Y. Kondr. et J.-S. Hur, A. yongsangensis S. Y. Kondr. et J.-S. Hur, Biatora loekoesiana S. Y. Kondr. et J.-S. Hur, Caloplaca ivanpisutii S. Y. Kond., L. Lőkös et J.-S. Hur, Candelariella makarevichiae S. Y. Kondr., L. Lőkös et J.-S. Hur, Huriella pohangensis S. Y. Kondr., L. Lőkös et J.-S. Hur, H. salyangiana S. Y. Kondr. et J.-S. Hur, Hyperphyscia oxneri S. Y. Kondr. et J.-S. Hur, Nectriopsis gangwondoensis S. Y. Kondr., L. Lőkös et J.-S. Hur, Porina ulleungdoensis S. Y. Kondr., L. Lőkös, J. Halda et J.-S. Hur, Psoroglaena gangwondoensis S. Y. Kondr., L. Lőkös, J.-J. Woo et J.-S. Hur, Pyrenopsis cavernicola S. Y. Kondr., L. Lőkös et J.-S. Hur, Rhizocarpon sunchonense S. Y. Kondr. et J.-S. Hur, Rufoplaca ulleungensis S. Y. Kondr., L. Lőkös et J.-S. Hur, Sarcogyne ulleungdoensis S. Y. Kondr., L. Lőkös et J.-S. Hur, Skyttea bumyoungsungii S. Y. Kondr. et J.-S. Hur, Thelopsis gangwondoensis S. Y. Kondr., L. Lőkös, J.-J. Woo et J.-S. Hur, Topelia loekoesiana S. Y. Kondr., J.-J. Woo et J.-S. Hur, all from South Korea, as well as Gallowayella awasthiana S. Y. Kondr. et D. K. Upreti from India and Franwilsia skottsbergii S. Y. Kondr., A. Thell, S.-O. Oh et J.-S. Hur from Chile are described,illustrated and compared with closely related taxa. A key to Agonimia species known from Eastern Asia is also included. Lecanora helicopis is recorded for Korea for the first time, as well as a number of new to Jeju-do Island species (i.e.: Agonimia loekoesii, Biatora pseudosambuci, Buellia extremoorientalis, and Ivanpisutia oxneri) are recorded. Additional data on conidiomata and morphological characters of thallus and apothecia and illustrations as well as data on newly located isotype specimens recently described from Canary Islands, Spain Fominiella tenerifensis are provided. Two new combinations, i.e.: Phaeophyscia saxatilis (for Physcia saxatilis Kashiw.), and Xanthoparmelia umezuana (for Karoowia umezuana Moon K. H. et Kashiw.) are also proposed.
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| 7. |
- Kondratyuk, Sergij, et al.
(author)
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Three new genera of the Teloschistaceae proved by three gene phylogeny
- 2020
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In: Acta Botanica Hungarica. - : Akademiai Kiado Zrt.. - 1588-2578 .- 0236-6495. ; 62:1-2, s. 109-136
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Journal article (peer-reviewed)abstract
- Three new for science genera, i.e.: Erichansenia S. Y. Kondr., Kärnefelt et A. Thell for the ‘Caloplaca’ epithallina group of the subfamily Xanthorioideae, as well as Lendemeriella S. Y. Kondr. for the Caloplaca reptans group, and Pisutiella S. Y. Kondr., L. Lőkös et E. Farkas for the Caloplaca conversa group of the subfamily Caloplacoideae of the Teloschistaceae, are described on the basis of results of the three gene phylogeny of the Teloschistaceae based on nrITS, nrLSU and mtSSU sequences.Twenty-seven new combinations, i.e.: Erichansenia epithallina (for Caloplaca epithallina Lynge), Erichansenia cryodesertorum (for Shackletonia cryodesertorum Garrido-Ben., Søchting et Pérez-Ort.), Erichansenia sauronii (for Caloplaca sauronii Søchting et Øvstedal), Fauriea mandshuriaensis (for Caloplaca mandshuriaensis S. Y. Kondr., L. Lőkös et J.-S. Hur), Fauriea trassii (for Caloplaca trassii Galanina et S. Y. Kondr.), Lendemeriella borealis (for Lecanora pyracea f. borealis Vain.), Lendemeriella dakotensis (for Caloplaca dakotensis Wetmore), Lendemeriella exsecuta (for Lecanora exsecuta Nyl.), Lendemeriella lucifuga (for Caloplaca lucifuga G. Thor), Lendemeriella nivalis (for Zeora nivalis Körb.), Lendemeriella reptans (for Caloplaca reptans Lendemeret B. P. Hodk.), Lendemeriella sorocarpa (for Placodium sorocarpum Vain.), Lendemeriella tornoensis (for Caloplaca tornoensis H. Magn.), Pisutiella congrediens (for Lecanora congrediens Nyl.), Pisutiella conversa (for Callopisma conversum Kremp.), Pisutiella furax (for Caloplaca furax Egea et Llimona), Pisutiella grimmiae (for Lecanora grimmiae Nyl.), Pisutiella ivanpisutii (for Caloplaca ivanpisutii S. Y. Kondr., L. Lőkös et Hur), Pisutiella phaeothamnos (for Caloplaca phaeothamnos K. Kalb et J. Poelt), Pyrenodesmia aetnensis (for Caloplaca aetnensis B. de Lesd.), Pyrenodesmia albolutescens (for Lecanora albolutescens Nyl.), Pyrenodesmia aractina (for Parmelia aractina Fr.), Pyrenodesmia atroflava (for Lecidea atroflava Turner), Pyrenodesmia bicolor (for Caloplaca bicolor H. Magn.), Pyrenodesmia molariformis (for Caloplaca molariformis Frolov, Vondrák, Nadyeina et Khodos.), Pyrenodesmia neotaurica (for Caloplaca neotaurica Vondrák, Khodos., Arup et Søchting), Pyrenodesmia peliophylla (for Placodium peliophyllum Tuck.) are proposed based on results from a combined phylogenetic analysis using nrITS, nrLSU and mtSSU gene sequences.
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| 8. |
- Kondratyuk, Sergey Y., et al.
(author)
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New and noteworthy lichen-forming and lichenicolous fungi 9
- 2019
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In: Acta Botanica Hungarica. - : Akademiai Kiado Zrt.. - 1588-2578 .- 0236-6495. ; 61:3-4, s. 325-367
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Journal article (peer-reviewed)abstract
- The new for science genus Loekoeslaszloa S. Y. Kondr. et J.-S. Hur, confirmed by three gene phylogeny of the subfamily Teloschistoideae of the Teloschistaceae based on nrITS, nrLSU and mtSSU sequences, and ten new to science species from Eastern Asia, i.e. from South Korea: Bacidina loekoesiana S. Y. Kondr. et J.-S. Hur, Fauriea jejuensis S. Y. Kondr., L. Lőkös et J.-S. Hur, Gyalecta ulleungdoensis S. Y. Kondr., L. Lőkös et J.-S. Hur, Loekoeslaszloa huriana S. Y. Kondr., Orientophila dodongana S. Y. Kondr., L. Lőkös et J.-S. Hur, O. imjadoensis S. Y. Kondr., L. Lőkös et J.-S. Hur, O. incheonensis S. Y. Kondr., L. Lőkös et J.-S. Hur, Oxneriopsis taehaensis S. Y. Kondr., L. Lőkös et J.-S. Hur, Yoshimuria ivanpisutiana S. Y. Kondr., L. Lőkös et J.-S. Hur and Y. seokpoensis S. Y. Kondr., L. Lőkös et J.-S. Hur are described, illustrated and compared with closely related taxa. Molecular data for the recently described species Flavoplaca laszloana are for the first time provided. Position of Tassiloa magellanica in the subfamily Teloschistoideae as well as Yoshimuria stipitata in the Ikaerioideae ad int. is for the first time illustrated. An identification key to Fauriea species (including six species, i.e.: F. chujaensis, F. jejuensis, F. orientochinensis, F. patwolseleyae, F. tabidella and F. yonaguniensis), a key to Orientophila species of the Eastern Asian region (of the Orientophila loekoesii and the O. diffluens groups), and a key to Yoshimuria and Loekoeslaszloa species of the Eastern Asian region (including four species, i.e.: Y. galbina, Y. ivanpisutiana, Y. seokpoensis, and Y. spodoplaca, as well as Loekoeslaszloa geumohdoensis and L. huriana) are presented. Seven new combinations, i.e. Fauriea patwolseleyae (basionym: Caloplaca patwolseleyae S. Y. Kondr., U. Jayalal et J.-S. Hur),Fauriea tabidella (basionym: Lecanora tabidella Nyl.), Loekoeslaszloa geumohdoensis (basionym: Mikhtomia geumohdoensis S. Y. Kondr., D. Liu et Hur), Niesslia coarctatae (basionym: Stigmidium coarctatae S. Y. Kondr., L. Lőkös et J.-S. Hur), Opeltia epiphyta (basionym: Caloplaca epiphyta Lynge), Tassiloa magellanica (basionym: Caloplaca magellanica Søchting et Sancho) and Yoshimuria stipitata (basionym: Caloplaca stipitata Wetmore) are proposed. Yoshimuria galbina and Lecanora ussuriensis are for the first time recorded from Japan.
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| 9. |
- Kondratyuk, Sergey Y., et al.
(author)
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Three new genera of the Ramalinaceae (lichen-forming Ascomycota) and the phenomenon of presence of ‘extraneous mycobiont DNA’ in lichen associations
- 2019
-
In: Acta Botanica Hungarica. - : Akademiai Kiado Zrt.. - 1588-2578 .- 0236-6495. ; 61:3-4, s. 275-323
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Journal article (peer-reviewed)abstract
- Three new genera Coppinsidea, Vandenboomia and Wolseleyidea are described and the genera Ivanpisutia, Lecaniella and Myrionora are resurrected on the basis of a phylogenetic analysisof multi-locus sequence data of the Ramalinaceae including the nuclear protein-codingmarker rpb2, the internal transcribed spacer and a fragment of the small mitochondrialsubunit. The genus Hertelidea was positioned within the Ramalina clade of the phylogenetic tree of the Ramalinaceae. Bacidia sipmanii, Phyllopsora chlorophaea, P. castaneocincta and Ramalina subbreviuscula were recorded from South Korea for the first time here confirming by molecular data, too.Forty-eight new combinations are proposed: Bacidia alnetorum (basionym: Biatoraalnetorum S. Ekman et Tønsberg), Biatora amazonica (basionym: Phyllopsora amazonica Kistenich et Timdal), Biatora cuyabensis (basionym: Lecidea cuyabensis Malme), Biatora halei (basionym: Pannaria halei Tuck.), Biatora kalbii (basionym: Phyllopsora kalbii Brako), Biatora subhispidula (basionym: Psoroma subhispidulum Nyl.), Coppinsidea alba (basionym: Catillaria alba Coppins et Vězda), Coppinsidea aphana (basionym: Lecidea aphana Nyl.), Coppinsidea croatica (basionym: Catillaria croatica Zahlbr.), Coppinsidea fuscoviridis (basionym: Bilimbia fuscoviridis Anzi), Coppinsidea pallens (basionym: Bilimbia pallens Kullh.), Coppinsidea ropalosporoides(basionym: Gyalidea ropalosporoides S. Y. Kondr., L. Lőkös et J.-S. Hur), Coppinsidea scotinodes (basionym: Lecidea scotinodes Nyl.), Coppinsidea sphaerella (basionym: Lecidea sphaerella Hedl.), Ivanpisutia hypophaea (basionym: Biatora hypophaea Printzen et Tønsberg), Ivanpisutia ocelliformis (basionym: Lecidea ocelliformis Nyl.), Lecaniella belgica (basionym: Lecania belgica van den Boom et Reese Naesb.), Lecaniella cyrtellina (basionym: Lecanora cyrtellina Nyl.), Lecaniella dubitans (basionym: Lecidea dubitans Nyl.), Lecaniella erysibe (basionym: Lichenerysibe Ach.), Lecaniella hutchinsiae (basionym: Lecanora hutchinsiae Nyl.), Lecaniella naegelii(basionym: Biatora naegelii Hepp), Lecaniella prasinoides (basionym: Lecania prasinoides Elenkin), Lecaniella sylvestris (basionym: Biatora sylvestris Arnold), Lecaniella tenera (basionym: Scoliciosporum tenerum Lönnr.), Mycobilimbia albohyalina (basionym: Lecidea anomala f. albohyalina Nyl.), Mycobilimbia cinchonarum (basionym: Triclinum cinchonarum Fée), Mycobilimbia concinna (basionym: Phyllopsora concinna Kistenich et Timdal), Mycobilimbia ramea (basionym:Bacidina ramea S. Ekman), Mycobilimbia siamensis (basionym: Phyllopsora siamensisKistenich et Timdal), Myrionora australis (basionym: Biatora australis Rodr. Flakus et Printzen), Myrionora ementiens (basionym: Lecidea ementiens Nyl.), Myrionora flavopunctata (basionym: Lecanora flavopunctata Tønsberg), Myrionora globulosa (basionym: Lecidea globulosa Flörke), Myrionora hemipolia (basionym: Lecidea arceutina f. hemipolia Nyl.), Myrionora lignimollis (basionym: Biatora ligni-mollis T. Sprib. et Printzen), Myrionora malcolmii (basionym: Phyllopsora malcolmii Vězda et Kalb), Myrionora vacciniicola (basionym: Lecidea vacciniicola Tønsberg), Phyllopsora agonimioides (basionym: Coenogonium agonimioides J. P. Halda, S.-O. Oh et J.-S. Hur), Phyllopsora sunchonensis (basionym: Agonimia sunchonensis S. Y. Kondr. etJ.-S. Hur), Vandenboomia chlorotiza (basionym: Lecidea chlorotiza Nyl.), Vandenboomia falcata (basionym: Lecania falcata van den Boom, M. Brand, Coppins, Magain et Sérus.), Wolseleyidea africana (basionym: Phyllopsora africana Timdal et Krog), Wolseleyidea byssiseda (basionym: Lecidea byssiseda Nyl. ex Hue), Wolseleyidea canoumbrina (basionym: Lecidea canoumbrina Vain.), Wolseleyidea furfurella (basionym: Phyllopsora furfurella Kistenich et Timdal), Wolseleyidea ochroxantha (basionym: Lecidea ochroxantha Nyl.), and Wolseleyidea swinscowii (basionym: Phyllopsora swinscowii Timdal et Krog). The combination Biatora longispora (Degel.)Lendemer et Printzen is validated here. The new names Biatora vezdana for Lecaniafurfuracea Vĕzda and Coppinsidea vainioana for Lecidea sphaeroidiza Vain. are proposed. The phenomenon of presence of ‘extraneous mycobiont DNA’ in lichen association, i.e. DNA, belonging neither to mycobiont nor photobiont or to endophytic fungi is for the first time illustrated. So the presence of nrITS and mtSSU sequences of crustose lichen Coppinsidea ropalosporoides in thalli of crustose Verrucaria margacea and foliose Kashiwadia orientalis, as well as nrITS of Phyllopsora sp. KoLRI in Agonimia pacifica and Biatora longispora, or nrITS and mtSSU of Biatora longispora in thalli of Agonimia pacifica, Oxneriopsis oxneri and Pyxine limbulata, Ivanpisutia oxneri in thalli of Rinodina xanthophaea, etc. is documented. Scarce cases of presence of ‘extraneous mycobiont DNA’ in representatives of the Teloschistaceae, Physciaceae known from literature data are discussed, too.
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- Zamora, Juan Carlos, et al.
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Considerations and consequences of allowing DNA sequence data as types of fungal taxa
- 2018
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In: IMA Fungus. - : INT MYCOLOGICAL ASSOC. - 2210-6340 .- 2210-6359. ; 9:1, s. 167-185
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Journal article (peer-reviewed)abstract
- Nomenclatural type definitions are one of the most important concepts in biological nomenclature. Being physical objects that can be re-studied by other researchers, types permanently link taxonomy (an artificial agreement to classify biological diversity) with nomenclature (an artificial agreement to name biological diversity). Two proposals to amend the International Code of Nomenclature for algae, fungi, and plants (ICN), allowing DNA sequences alone (of any region and extent) to serve as types of taxon names for voucherless fungi (mainly putative taxa from environmental DNA sequences), have been submitted to be voted on at the 11th International Mycological Congress (Puerto Rico, July 2018). We consider various genetic processes affecting the distribution of alleles among taxa and find that alleles may not consistently and uniquely represent the species within which they are contained. Should the proposals be accepted, the meaning of nomenclatural types would change in a fundamental way from physical objects as sources of data to the data themselves. Such changes are conducive to irreproducible science, the potential typification on artefactual data, and massive creation of names with low information content, ultimately causing nomenclatural instability and unnecessary work for future researchers that would stall future explorations of fungal diversity. We conclude that the acceptance of DNA sequences alone as types of names of taxa, under the terms used in the current proposals, is unnecessary and would not solve the problem of naming putative taxa known only from DNA sequences in a scientifically defensible way. As an alternative, we highlight the use of formulas for naming putative taxa (candidate taxa) that do not require any modification of the ICN.
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