| 1. |
- Sagova-Mareckova, M., et al.
(author)
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Expanding ecological assessment by integrating microorganisms into routine freshwater biomonitoring
- 2021
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In: Water Research. - : Elsevier. - 0043-1354 .- 1879-2448. ; 191
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Research review (peer-reviewed)abstract
- Bioindication has become an indispensable part of water quality monitoring in most countries of the world, with the presence and abundance of bioindicator taxa, mostly multicellular eukaryotes, used for biotic indices. In contrast, microbes (bacteria, archaea and protists) are seldom used as bioindicators in routine assessments, although they have been recognized for their importance in environmental processes. Recently, the use of molecular methods has revealed unexpected diversity within known functional groups and novel metabolic pathways that are particularly important in energy and nutrient cycling. In various habitats, microbial communities respond to eutrophication, metals, and natural or anthropogenic organic pollutants through changes in diversity and function. In this review, we evaluated the common trends in these changes, documenting that they have value as bioindicators and can be used not only for monitoring but also for improving our understanding of the major processes in lotic and lentic environments. Current knowledge provides a solid foundation for exploiting microbial taxa, community structures and diversity, as well as functional genes, in novel monitoring programs. These microbial community measures can also be combined into biotic indices, improving the resolution of individual bioindicators. Here, we assess particular molecular approaches complemented by advanced bioinformatic analysis, as these are the most promising with respect to detailed bioindication value. We conclude that microbial community dynamics are a missing link important for our understanding of rapid changes in the structure and function of aquatic ecosystems, and should be addressed in the future environmental monitoring of freshwater ecosystems. (c) 2020 The Author(s). Published by Elsevier Ltd. This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/ )
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| 2. |
- Costello, David M., et al.
(author)
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Global patterns and controls of nutrient immobilization on decomposing cellulose in riverine ecosystems
- 2022
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In: Global Biogeochemical Cycles. - : John Wiley & Sons. - 0886-6236 .- 1944-9224. ; 36:3
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Journal article (peer-reviewed)abstract
- Microbes play a critical role in plant litter decomposition and influence the fate of carbon in rivers and riparian zones. When decomposing low-nutrient plant litter, microbes acquire nitrogen (N) and phosphorus (P) from the environment (i.e., nutrient immobilization), and this process is potentially sensitive to nutrient loading and changing climate. Nonetheless, environmental controls on immobilization are poorly understood because rates are also influenced by plant litter chemistry, which is coupled to the same environmental factors. Here we used a standardized, low-nutrient organic matter substrate (cotton strips) to quantify nutrient immobilization at 100 paired stream and riparian sites representing 11 biomes worldwide. Immobilization rates varied by three orders of magnitude, were greater in rivers than riparian zones, and were strongly correlated to decomposition rates. In rivers, P immobilization rates were controlled by surface water phosphate concentrations, but N immobilization rates were not related to inorganic N. The N:P of immobilized nutrients was tightly constrained to a molar ratio of 10:1 despite wide variation in surface water N:P. Immobilization rates were temperature-dependent in riparian zones but not related to temperature in rivers. However, in rivers nutrient supply ultimately controlled whether microbes could achieve the maximum expected decomposition rate at a given temperature. Collectively, we demonstrated that exogenous nutrient supply and immobilization are critical control points for decomposition of organic matter.
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| 3. |
- Tiegs, Scott D., et al.
(author)
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Global patterns and drivers of ecosystem functioning in rivers and riparian zones
- 2019
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In: Science Advances. - Washington : American Association of Advancement in Science. - 2375-2548. ; 5:1
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Journal article (peer-reviewed)abstract
- River ecosystems receive and process vast quantities of terrestrial organic carbon, the fate of which depends strongly on microbial activity. Variation in and controls of processing rates, however, are poorly characterized at the global scale. In response, we used a peer-sourced research network and a highly standardized carbon processing assay to conduct a global-scale field experiment in greater than 1000 river and riparian sites. We found that Earth's biomes have distinct carbon processing signatures. Slow processing is evident across latitudes, whereas rapid rates are restricted to lower latitudes. Both the mean rate and variability decline with latitude, suggesting temperature constraints toward the poles and greater roles for other environmental drivers (e.g., nutrient loading) toward the equator. These results and data set the stage for unprecedented "next-generation biomonitoring" by establishing baselines to help quantify environmental impacts to the functioning of ecosystems at a global scale.
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| 4. |
- Chauvet, Eric, et al.
(author)
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Litter decomposition as an indicator of stream ecosystem functioning at local-to-continental scales : insights from the European RivFunction project
- 2016
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In: Large-scale ecology. - London : Academic Press. - 9780081009352 ; 55, s. 99-182
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Book chapter (peer-reviewed)abstract
- RivFunction is a pan-European initiative that started in 2002 and was aimed at establishing a novel functional-based approach to assessing the ecological status of rivers. Litter decomposition was chosen as the focal process because it plays a central role in stream ecosystems and is easy to study in the field. Impacts of two stressors that occur across the continent, nutrient pollution and modified riparian vegetation, were examined at > 200 paired sites in nine European ecoregions. In response to the former, decomposition was dramatically slowed at both extremes of a 1000-fold nutrient gradient, indicating nutrient limitation in unpolluted sites, highly variable responses across Europe in moderately impacted streams, and inhibition via associated toxic and additional stressors in highly polluted streams. Riparian forest modification by clear cutting or replacement of natural vegetation by plantations (e.g. conifers, eucalyptus) or pasture produced similarly complex responses. Clear effects caused by specific riparian disturbances were observed in regionally focused studies, but general trends across different types of riparian modifications were not apparent, in part possibly because of important indirect effects. Complementary field and laboratory experiments were undertaken to tease apart the mechanistic drivers of the continental scale field bioassays by addressing the influence of litter, fungal and detritivore diversity. These revealed generally weak and context-dependent effects on decomposition, suggesting high levels of redundancy (and hence potential insurance mechanisms that can mitigate a degree of species loss) within the food web. Reduced species richness consistently increased decomposition variability, if not the absolute rate. Further field studies were aimed at identifying important sources of this variability (e.g. litter quality, temporal variability) to help constrain ranges of predicted decomposition rates in different field situations. Thus, although many details still need to be resolved, litter decomposition holds considerable potential in some circumstances to capture impairment of stream ecosystem functioning. For instance, species traits associated with the body size and metabolic capacity of the consumers were often the main driver at local scales, and these were often translated into important determinants of otherwise apparently contingent effects at larger scales. Key insights gained from conducting continental scale studies included resolving the apparent paradox of inconsistent relationships between nutrients and decomposition rates, as the full complex multidimensional picture emerged from the large-scale dataset, of which only seemingly contradictory fragments had been seen previously.
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| 5. |
- Chauvet, Eric, et al.
(author)
-
Litter decomposition as an indicator of stream ecosystem functioning at local-to-continental scales : insights from the European RivFunction project
- 2016
-
In: Large-scale ecology. - London : Academic Press. ; 55, s. 99-182
-
Book chapter (pop. science, debate, etc.)abstract
- RivFunction is a pan-European initiative that started in 2002 and was aimed at establishing a novel functional-based approach to assessing the ecological status of rivers. Litter decomposition was chosen as the focal process because it plays a central role in stream ecosystems and is easy to study in the field. Impacts of two stressors that occur across the continent, nutrient pollution and modified riparian vegetation, were examined at > 200 paired sites in nine European ecoregions. In response to the former, decomposition was dramatically slowed at both extremes of a 1000-fold nutrient gradient, indicating nutrient limitation in unpolluted sites, highly variable responses across Europe in moderately impacted streams, and inhibition via associated toxic and additional stressors in highly polluted streams. Riparian forest modification by clear cutting or replacement of natural vegetation by plantations (e.g. conifers, eucalyptus) or pasture produced similarly complex responses. Clear effects caused by specific riparian disturbances were observed in regionally focused studies, but general trends across different types of riparian modifications were not apparent, in part possibly because of important indirect effects. Complementary field and laboratory experiments were undertaken to tease apart the mechanistic drivers of the continental scale field bioassays by addressing the influence of litter, fungal and detritivore diversity. These revealed generally weak and context-dependent effects on decomposition, suggesting high levels of redundancy (and hence potential insurance mechanisms that can mitigate a degree of species loss) within the food web. Reduced species richness consistently increased decomposition variability, if not the absolute rate. Further field studies were aimed at identifying important sources of this variability (e.g. litter quality, temporal variability) to help constrain ranges of predicted decomposition rates in different field situations. Thus, although many details still need to be resolved, litter decomposition holds considerable potential in some circumstances to capture impairment of stream ecosystem functioning. For instance, species traits associated with the body size and metabolic capacity of the consumers were often the main driver at local scales, and these were often translated into important determinants of otherwise apparently contingent effects at larger scales. Key insights gained from conducting continental scale studies included resolving the apparent paradox of inconsistent relationships between nutrients and decomposition rates, as the full complex multidimensional picture emerged from the large-scale dataset, of which only seemingly contradictory fragments had been seen previously.
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