| 1. |
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| 2. |
- Beal, Jacob, et al.
(author)
-
Robust estimation of bacterial cell count from optical density
- 2020
-
In: Communications Biology. - : Springer Science and Business Media LLC. - 2399-3642. ; 3:1
-
Journal article (peer-reviewed)abstract
- Optical density (OD) is widely used to estimate the density of cells in liquid culture, but cannot be compared between instruments without a standardized calibration protocol and is challenging to relate to actual cell count. We address this with an interlaboratory study comparing three simple, low-cost, and highly accessible OD calibration protocols across 244 laboratories, applied to eight strains of constitutive GFP-expressing E. coli. Based on our results, we recommend calibrating OD to estimated cell count using serial dilution of silica microspheres, which produces highly precise calibration (95.5% of residuals <1.2-fold), is easily assessed for quality control, also assesses instrument effective linear range, and can be combined with fluorescence calibration to obtain units of Molecules of Equivalent Fluorescein (MEFL) per cell, allowing direct comparison and data fusion with flow cytometry measurements: in our study, fluorescence per cell measurements showed only a 1.07-fold mean difference between plate reader and flow cytometry data.
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| 3. |
- Klionsky, Daniel J., et al.
(author)
-
Guidelines for the use and interpretation of assays for monitoring autophagy
- 2012
-
In: Autophagy. - : Informa UK Limited. - 1554-8635 .- 1554-8627. ; 8:4, s. 445-544
-
Research review (peer-reviewed)abstract
- In 2008 we published the first set of guidelines for standardizing research in autophagy. Since then, research on this topic has continued to accelerate, and many new scientists have entered the field. Our knowledge base and relevant new technologies have also been expanding. Accordingly, it is important to update these guidelines for monitoring autophagy in different organisms. Various reviews have described the range of assays that have been used for this purpose. Nevertheless, there continues to be confusion regarding acceptable methods to measure autophagy, especially in multicellular eukaryotes. A key point that needs to be emphasized is that there is a difference between measurements that monitor the numbers or volume of autophagic elements (e.g., autophagosomes or autolysosomes) at any stage of the autophagic process vs. those that measure flux through the autophagy pathway (i.e., the complete process); thus, a block in macroautophagy that results in autophagosome accumulation needs to be differentiated from stimuli that result in increased autophagic activity, defined as increased autophagy induction coupled with increased delivery to, and degradation within, lysosomes (in most higher eukaryotes and some protists such as Dictyostelium) or the vacuole (in plants and fungi). In other words, it is especially important that investigators new to the field understand that the appearance of more autophagosomes does not necessarily equate with more autophagy. In fact, in many cases, autophagosomes accumulate because of a block in trafficking to lysosomes without a concomitant change in autophagosome biogenesis, whereas an increase in autolysosomes may reflect a reduction in degradative activity. Here, we present a set of guidelines for the selection and interpretation of methods for use by investigators who aim to examine macroautophagy and related processes, as well as for reviewers who need to provide realistic and reasonable critiques of papers that are focused on these processes. These guidelines are not meant to be a formulaic set of rules, because the appropriate assays depend in part on the question being asked and the system being used. In addition, we emphasize that no individual assay is guaranteed to be the most appropriate one in every situation, and we strongly recommend the use of multiple assays to monitor autophagy. In these guidelines, we consider these various methods of assessing autophagy and what information can, or cannot, be obtained from them. Finally, by discussing the merits and limits of particular autophagy assays, we hope to encourage technical innovation in the field.
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| 4. |
- Kristanl, Matej, et al.
(author)
-
The Seventh Visual Object Tracking VOT2019 Challenge Results
- 2019
-
In: 2019 IEEE/CVF INTERNATIONAL CONFERENCE ON COMPUTER VISION WORKSHOPS (ICCVW). - : IEEE COMPUTER SOC. - 9781728150239 ; , s. 2206-2241
-
Conference paper (peer-reviewed)abstract
- The Visual Object Tracking challenge VOT2019 is the seventh annual tracker benchmarking activity organized by the VOT initiative. Results of 81 trackers are presented; many are state-of-the-art trackers published at major computer vision conferences or in journals in the recent years. The evaluation included the standard VOT and other popular methodologies for short-term tracking analysis as well as the standard VOT methodology for long-term tracking analysis. The VOT2019 challenge was composed of five challenges focusing on different tracking domains: (i) VOT-ST2019 challenge focused on short-term tracking in RGB, (ii) VOT-RT2019 challenge focused on "real-time" short-term tracking in RGB, (iii) VOT-LT2019 focused on long-term tracking namely coping with target disappearance and reappearance. Two new challenges have been introduced: (iv) VOT-RGBT2019 challenge focused on short-term tracking in RGB and thermal imagery and (v) VOT-RGBD2019 challenge focused on long-term tracking in RGB and depth imagery. The VOT-ST2019, VOT-RT2019 and VOT-LT2019 datasets were refreshed while new datasets were introduced for VOT-RGBT2019 and VOT-RGBD2019. The VOT toolkit has been updated to support both standard short-term, long-term tracking and tracking with multi-channel imagery. Performance of the tested trackers typically by far exceeds standard baselines. The source code for most of the trackers is publicly available from the VOT page. The dataset, the evaluation kit and the results are publicly available at the challenge website(1).
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| 5. |
- Jarvis, Erich D., et al.
(author)
-
Whole-genome analyses resolve early branches in the tree of life of modern birds
- 2014
-
In: Science. - : American Association for the Advancement of Science (AAAS). - 0036-8075 .- 1095-9203. ; 346:6215, s. 1320-1331
-
Journal article (peer-reviewed)abstract
- To better determine the history of modern birds, we performed a genome-scale phylogenetic analysis of 48 species representing all orders of Neoaves using phylogenomic methods created to handle genome-scale data. We recovered a highly resolved tree that confirms previously controversial sister or close relationships. We identified the first divergence in Neoaves, two groups we named Passerea and Columbea, representing independent lineages of diverse and convergently evolved land and water bird species. Among Passerea, we infer the common ancestor of core landbirds to have been an apex predator and confirm independent gains of vocal learning. Among Columbea, we identify pigeons and flamingoes as belonging to sister clades. Even with whole genomes, some of the earliest branches in Neoaves proved challenging to resolve, which was best explained by massive protein-coding sequence convergence and high levels of incomplete lineage sorting that occurred during a rapid radiation after the Cretaceous-Paleogene mass extinction event about 66 million years ago.
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| 6. |
- Kristan, Matej, et al.
(author)
-
The first visual object tracking segmentation VOTS2023 challenge results
- 2023
-
In: 2023 IEEE/CVF International conference on computer vision workshops (ICCVW). - : Institute of Electrical and Electronics Engineers Inc.. - 9798350307443 - 9798350307450 ; , s. 1788-1810
-
Conference paper (peer-reviewed)abstract
- The Visual Object Tracking Segmentation VOTS2023 challenge is the eleventh annual tracker benchmarking activity of the VOT initiative. This challenge is the first to merge short-term and long-term as well as single-target and multiple-target tracking with segmentation masks as the only target location specification. A new dataset was created; the ground truth has been withheld to prevent overfitting. New performance measures and evaluation protocols have been created along with a new toolkit and an evaluation server. Results of the presented 47 trackers indicate that modern tracking frameworks are well-suited to deal with convergence of short-term and long-term tracking and that multiple and single target tracking can be considered a single problem. A leaderboard, with participating trackers details, the source code, the datasets, and the evaluation kit are publicly available at the challenge website1
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| 7. |
- Han, Ning, et al.
(author)
-
Rational design of Ruddlesden–Popper perovskite electrocatalyst for oxygen reduction to hydrogen peroxide
- 2022
-
In: SusMat. - : Wiley. - 2766-8479 .- 2692-4552. ; 2:4, s. 456-465
-
Journal article (peer-reviewed)abstract
- Although the oxygen reduction process to hydrogen peroxide (H2O2) is a green option for H2O2 generation, the low activity and selectivity hindered the industry's process. In recent years, the electrochemical synthesis of H2O2 through a 2e– transfer method of oxygen reduction reaction (ORR) has piqued the interest of both academics and industry. Metal oxide catalysts have emerged as a novel family of electrochemical catalysts due to their unusual physical, chemical, and electrical characteristics. In this work, we first developed a Ruddlesden–Popper perovskite oxide (Pr2NiO4+δ) as a highly selective and active catalyst for 2e– ORR to produce H2O2. Molybdenum was introduced here to adjust the oxidation states of these transition metals with successful substitution into Ni-site to prepare Pr2Ni1-xMoxO4+δ, and the molybdenum substitution improves the H2O2 selectivity during the ORR process, in 0.1 M KOH, from 60% of Pr2NiO4+δ to 79% of Pr2Ni0.8Mo0.2O4+δ at 0.55 V versus RHE. A limiting H2O2 concentration of 0.24 mM for Pr2NiO4+δ and 0.42 mM for Pr2Ni0.8Mo0.2O4+δ was obtained at a constant current of 10 mA/cm2 using a flow-cell reactor using a gas-diffusion electrode.
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| 8. |
- Xia, Zhisheng, et al.
(author)
-
Fabrication and Tribological Properties of Nickel-Based Cellular Structure Self-Lubricating Composites by Selective Laser Melting and Metal Infiltration
- 2023
-
In: Tribology Transactions. - 1040-2004 .- 1547-397X. ; 66:4, s. 670-682
-
Journal article (peer-reviewed)abstract
- The service life of Inconel 718 (IN718) nickel-based superalloys under extreme working conditions is limited due to their poor tribological properties. In this study, IN718 cellular structure self-lubricating composites were fabricated by selective laser melting (SLM) and multi-soft metal (Sn-Pb-Ag) infiltration. Different cellular structures were verified by means of numerical simulation and experiment. The effects of pore diameter and temperature on tribological properties of the selective-laser-melted (SLMed) IN718 with Sn-Pb-Ag (INSPA) infiltration self-lubricating composites were investigated. Results show that INSPA samples of cellular structure with a pore diameter of 1.4 mm (INSPA3) exhibited excellent tribological properties compared to the two other pore diameters of 1.2 mm (INSPA2) and 1.0 mm (INSPA1). The tribological properties test results at different temperatures indicate that the coefficient of friction (COF) of INSPA3 was decreased from 0.29 to 0.13 as the temperature of 25 °C rose to 350 °C. The reason is that more Sn-Pb-Ag lubricant was stored in the Ф1.4-mm holes, which were heated and expanded to the worn surface during the friction process to realize self-compensation lubrication. At 350 °C, the friction product of Pb2O was decomposed into PbO and other multicomponent friction oxides were generated, which improves the wear resistance of the SLMed INSPA self-lubricating composites. This study demonstrates a potential approach to enhance the tribological properties and service life of IN718 superalloys used in harsh friction conditions.
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| 9. |
- Zhao, Juan, et al.
(author)
-
A cross-sectional study on upright heart rate and BP changing characteristics: basic data for establishing diagnosis of postural orthostatic tachycardia syndrome and orthostatic hypertension
- 2015
-
In: BMJ Open. - : BMJ Publishing Group: Open Access / BMJ Journals. - 2044-6055. ; 5:6
-
Journal article (peer-reviewed)abstract
- Objective: We aimed to determine upright heart rate and blood pressure (BP) changes to suggest diagnostic criteria for postural orthostatic tachycardia syndrome (POTS) and orthostatic hypertension (OHT) in Chinese children. Methods: In this cross-sectional study, 1449 children and adolescents aged 6-18 years were randomly recruited from two cities in China, Kaifeng in Henan province and Anguo in Hebei province. They were divided into two groups: 844 children aged 6-12 years (group I) and 605 adolescents aged 13-18 years (group II). Heart rate and BP were recorded during an active standing test. Results: 95th percentile (P-95) of delta heart rate from supine to upright was 38 bpm, with a maximum upright heart rate of 130 and 124 bpm in group I and group II, respectively. P-95 of delta systolic blood pressure (SBP) increase was 18 mm Hg and P-95 of upright SBP was 132 mm Hg in group I and 138 mm Hg in group II. P-95 of delta diastolic blood pressure (DBP) increase was 24 mm Hg in group I and 21 mm Hg in group II, and P-95 of upright DBP was 89 mm Hg in group I and 91 mm Hg in group II. Conclusions: POTS is suggested when delta heart rate is greater than= 38 bpm (for easy memory, greater than= 40 bpm) from supine to upright, or maximum heart rate greater than= 130 bpm (children aged 6-12 years) and greater than= 125 bpm (adolescents aged 13-18 years), associated with orthostatic symptoms. OHT is suggested when delta SBP (increase) is greater than= 20 mm Hg, and/or delta DBP (increase) greater than= 25 mm Hg (in children aged 6-12 years) or greater than= 20 mm Hg (in adolescents aged 13-18 years) from supine to upright; or upright BP greater than= 130/90 mm Hg (in children aged 6-12 years) or greater than= 140/90 mm Hg (in adolescents aged 13-18 years).
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| 10. |
- Asayama, Kei, et al.
(author)
-
Setting Thresholds to Varying Blood Pressure Monitoring Intervals Differentially Affects Risk Estimates Associated With White-Coat and Masked Hypertension in the Population
- 2014
-
In: Hypertension. - 0194-911X .- 1524-4563. ; 64:5, s. 935-942
-
Journal article (peer-reviewed)abstract
- Outcome-driven recommendations about time intervals during which ambulatory blood pressure should be measured to diagnose white-coat or masked hypertension are lacking. We cross-classified 8237 untreated participants (mean age, 50.7 years; 48.4% women) enrolled in 12 population studies, using >= 140/>= 90, >= 130/>= 80, >= 135/>= 85, and >= 120/>= 70 mm Hg as hypertension thresholds for conventional, 24-hour, daytime, and nighttime blood pressure. White-coat hypertension was hypertension on conventional measurement with ambulatory normotension, the opposite condition being masked hypertension. Intervals used for classification of participants were daytime, nighttime, and 24 hours, first considered separately, and next combined as 24 hours plus daytime or plus nighttime, or plus both. Depending on time intervals chosen, white-coat and masked hypertension frequencies ranged from 6.3% to 12.5% and from 9.7% to 19.6%, respectively. During 91 046 person-years, 729 participants experienced a cardiovascular event. In multivariable analyses with normotension during all intervals of the day as reference, hazard ratios associated with white-coat hypertension progressively weakened considering daytime only (1.38; P=0.033), nighttime only (1.43; P=0.0074), 24 hours only (1.21; P=0.20), 24 hours plus daytime (1.24; P=0.18), 24 hours plus nighttime (1.15; P=0.39), and 24 hours plus daytime and nighttime (1.16; P=0.41). The hazard ratios comparing masked hypertension with normotension were all significant (P<0.0001), ranging from 1.76 to 2.03. In conclusion, identification of truly low-risk white-coat hypertension requires setting thresholds simultaneously to 24 hours, daytime, and nighttime blood pressure. Although any time interval suffices to diagnose masked hypertension, as proposed in current guidelines, full 24-hour recordings remain standard in clinical practice.
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| 11. |
- Fang, Wang, et al.
(author)
-
Green recovery of cropland carrying capacity in developed regions : empirical evidence from Guangdong, China
- 2023
-
In: Economic Change and Restructuring. - 1573-9414 .- 1574-0277. ; 56:3, s. 2405-2436
-
Journal article (peer-reviewed)abstract
- This paper evaluates the carrying capacity of cultivated land in Guangdong Province,China, using the entropy weight method. Ecological and environmental pressuresignificantly impacts capacity, while economic and social factors are stable.Production pressure fluctuates and rises. To improve capacity, we must reduce ecologicaland environmental pressure, protect cultivated land resources, develop andpromote green technology, and maintain water conservation facilities. The resultsindicate that reducing ecological and environmental pressure is essential to improvethe carrying capacity of cultivated land in Guangdong Province. In conclusion, thisstudy highlights the importance of balancing economic growth with environmentalsustainability in developing regions like Guangdong Province. It suggests that aholistic approach that considers ecological, economic, and social factors is necessaryto ensure long-term food security and sustainable land use practices.
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| 12. |
- Guo, Yuchen, et al.
(author)
-
Design Applicable 3D Microfluidic Functional Units Using 2D Topology Optimization with Length Scale Constraints
- 2020
-
In: Micromachines. - : MDPI. - 2072-666X. ; 11:6
-
Journal article (peer-reviewed)abstract
- Due to the limits of computational time and computer memory, topology optimization problems involving fluidic flow frequently use simplified 2D models. Extruded versions of the 2D optimized results typically comprise the 3D designs to be fabricated. In practice, the depth of the fabricated flow channels is finite; the limited flow depth together with the no-slip condition potentially make the fluidic performance of the 3D model very different from that of the simplified 2D model. This discrepancy significantly limits the usefulness of performing topology optimization involving fluidic flow in 2D—at least if special care is not taken. Inspired by the electric circuit analogy method, we limit the widths of the microchannels in the 2D optimization process. To reduce the difference of fluidic performance between the 2D model and its 3D counterpart, we propose an applicable 2D optimization model, and ensure the manufacturability of the obtained layout, combinations of several morphology-mimicking filters impose maximum or minimum length scales on the solid phase or the fluidic phase. Two typical Lab-on-chip functional units, Tesla valve and fluidic channel splitter, are used to illustrate the validity of the proposed application of length scale control.
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| 13. |
- Haas, Brian J., et al.
(author)
-
Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans
- 2009
-
In: Nature. - : Springer Science and Business Media LLC. - 0028-0836 .- 1476-4687. ; 461:7262, s. 393-398
-
Journal article (peer-reviewed)abstract
- Phytophthora infestans is the most destructive pathogen of potato and a model organism for the oomycetes, a distinct lineage of fungus-like eukaryotes that are related to organisms such as brown algae and diatoms. As the agent of the Irish potato famine in the mid-nineteenth century, P. infestans has had a tremendous effect on human history, resulting in famine and population displacement(1). To this day, it affects world agriculture by causing the most destructive disease of potato, the fourth largest food crop and a critical alternative to the major cereal crops for feeding the world's population(1). Current annual worldwide potato crop losses due to late blight are conservatively estimated at $6.7 billion(2). Management of this devastating pathogen is challenged by its remarkable speed of adaptation to control strategies such as genetically resistant cultivars(3,4). Here we report the sequence of the P. infestans genome, which at similar to 240 megabases (Mb) is by far the largest and most complex genome sequenced so far in the chromalveolates. Its expansion results from a proliferation of repetitive DNA accounting for similar to 74% of the genome. Comparison with two other Phytophthora genomes showed rapid turnover and extensive expansion of specific families of secreted disease effector proteins, including many genes that are induced during infection or are predicted to have activities that alter host physiology. These fast-evolving effector genes are localized to highly dynamic and expanded regions of the P. infestans genome. This probably plays a crucial part in the rapid adaptability of the pathogen to host plants and underpins its evolutionary potential.
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| 14. |
- Han, Ning, et al.
(author)
-
Achieving Efficient Electrocatalytic Oxygen Evolution in Acidic Media on Yttrium Ruthenate Pyrochlore through Cobalt Incorporation
- 2023
-
In: Advanced Functional Materials. - : Wiley. - 1616-301X .- 1616-3028. ; 33:20
-
Journal article (peer-reviewed)abstract
- The development of electrocatalysts for the oxygen evolution reaction (OER) especially in acidic media remains the major challenge that still requires significant advances, both in material design and mechanistic exploration. In this study, the incorporation of cobalt in Y2-xCoxRu2O7−δ results in an ultrahigh OER activity because of the charge redistribution at eg orbitals between Ru and Co atoms. The Y1.75Co0.25Ru2O7−δ electrocatalyst exhibits an extremely small overpotential of 275 mV in 0.5 m H2SO4 at the current density of 10 mA cm−2, which is smaller than that of parent Y2Ru2O7−δ (360 mV) and commercial RuO2 (286 mV) catalysts. The systematic investigation of the composition related to OER activity shows that the Co substitution will also bring other effective changes, such as reducing the bandgap, and creating oxygen vacancies, which result in fast OER charge transfer. Meanwhile, the strengthening of the bond hybridization between the d orbitals of metal (Y and Ru) and the 2p orbitals of O will intrinsically enhance the chemical stability. Finally, theoretical calculations indicate that cobalt substitution reduces the theoretical overpotential both through an adsorbate evolution mechanism and a lattice oxygen-mediated mechanism.
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| 15. |
- Klionsky, Daniel J., et al.
(author)
-
Guidelines for the use and interpretation of assays for monitoring autophagy in higher eukaryotes
- 2008
-
In: Autophagy. - : Landes Bioscience. - 1554-8627 .- 1554-8635. ; 4:2, s. 151-175
-
Research review (peer-reviewed)abstract
- Research in autophagy continues to accelerate,1 and as a result many new scientists are entering the field. Accordingly, it is important to establish a standard set of criteria for monitoring macroautophagy in different organisms. Recent reviews have described the range of assays that have been used for this purpose.2,3 There are many useful and convenient methods that can be used to monitor macroautophagy in yeast, but relatively few in other model systems, and there is much confusion regarding acceptable methods to measure macroautophagy in higher eukaryotes. A key point that needs to be emphasized is that there is a difference between measurements that monitor the numbers of autophagosomes versus those that measure flux through the autophagy pathway; thus, a block in macroautophagy that results in autophagosome accumulation needs to be differentiated from fully functional autophagy that includes delivery to, and degradation within, lysosomes (in most higher eukaryotes) or the vacuole (in plants and fungi). Here, we present a set of guidelines for the selection and interpretation of the methods that can be used by investigators who are attempting to examine macroautophagy and related processes, as well as by reviewers who need to provide realistic and reasonable critiques of papers that investigate these processes. This set of guidelines is not meant to be a formulaic set of rules, because the appropriate assays depend in part on the question being asked and the system being used. In addition, we emphasize that no individual assay is guaranteed to be the most appropriate one in every situation, and we strongly recommend the use of multiple assays to verify an autophagic response.
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| 16. |
- Kristan, Matej, et al.
(author)
-
The Visual Object Tracking VOT2016 Challenge Results
- 2016
-
In: COMPUTER VISION - ECCV 2016 WORKSHOPS, PT II. - Cham : SPRINGER INT PUBLISHING AG. - 9783319488813 - 9783319488806 ; , s. 777-823
-
Conference paper (peer-reviewed)abstract
- The Visual Object Tracking challenge VOT2016 aims at comparing short-term single-object visual trackers that do not apply pre-learned models of object appearance. Results of 70 trackers are presented, with a large number of trackers being published at major computer vision conferences and journals in the recent years. The number of tested state-of-the-art trackers makes the VOT 2016 the largest and most challenging benchmark on short-term tracking to date. For each participating tracker, a short description is provided in the Appendix. The VOT2016 goes beyond its predecessors by (i) introducing a new semi-automatic ground truth bounding box annotation methodology and (ii) extending the evaluation system with the no-reset experiment.
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| 17. |
- Liu, Jiahui, et al.
(author)
-
Highly Porous Metalloporphyrin Covalent Ionic Frameworks with Well-Defined Cooperative Functional Groups as Excellent Catalysts for CO2 Cycloaddition
- 2019
-
In: Chemistry - A European Journal. - : WILEY-V C H VERLAG GMBH. - 0947-6539 .- 1521-3765. ; 25:38, s. 9052-9059
-
Journal article (peer-reviewed)abstract
- The development of multifunctional heterogeneous catalysts with high porosity and remarkable catalytic activity still remains a challenge. Herein, four highly porous metalloporphyrin covalent ionic frameworks (CIFs) were synthesized by coupling 5,10,15,20-tetrakis(4-nitrophenyl)porphyrin (TNPP) with 3,8-diamino-6-phenylphenanithridine (NPPN) or 5,5 '-diamino-2,2 '-bipyridine (NBPy) followed by ionization with bromoethane (C2H5Br) or dibromoethane (C2H4Br2) and then metalization with Zn or Co. The resulting CIFs showed high efficiency in catalyzing the cycloaddition of propylene oxide (PO) with CO2 to form propylene carbonate (PC). All of the Zn-containing CIF catalysts were able to catalyze the cycloaddition reaction with a PC yield greater than 97 %. The TNPP/NBPy (CIF2) catalyst ionized with C2H4Br2 and metalized with Zn (Zn-CIF2-C2H4) exhibited the highest catalytic activity among the synthesized catalysts. The high catalytic performance of Zn-CIF2-C2H4 is related to its high porosity (577 m(2) g(-1)), high Br:metal ratio (1:3.89), and excellent synergistic action between the Lewis acidic Zn sites and the nucleophilic Br- ions. Zn-CIF2-C2H4 is sufficiently stable that greater than 94 % PC yield could be obtained even after six cycles. In addition, Zn-CIF2-C2H4 could catalyze the cycloaddition of several other epoxides with CO2. These highly porous materials are promising multifunctional and efficient catalysts for industrially relevant reactions.
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| 18. |
- Liu, Wei, Assistant Professor, 1987-, et al.
(author)
-
An open-source and experimentally guided CFD strategy for predicting air distribution in data centers with air-cooling
- 2023
-
In: Building and Environment. - : Elsevier BV. - 0360-1323 .- 1873-684X. ; 242
-
Journal article (peer-reviewed)abstract
- Data centers are generally over cooled to ensure the trouble free running. In a data center with air-cooling, it is crucial to investigate the air distribution and temperature field to aid the design, which ensures the stable operation with less energy consumption. Computational fluid dynamics (CFD) is perfect for such a mission, but the cost is high and the user is offered with little customization as commercial software are mostly adopted. Therefore, this study presented a systematic investigation on making use of open-source software, including OpenFOAM and paraView to realize geometry preparation, mesh generation, experimentally guided numerical setup and solution, and results visualization. A JAVA program was developed to ensure the case preparation and simulation in just one command. Self-adapted momentum sources were developed to realize the desired flow rate through the servers. The strategy was validated and demonstrated by a pilot data center from Alibaba cloud, Alibaba group. The developed solver predicted the air temperature in both cold and hot isles of a data center with mean error of 0.7 K. This work initiated a starting point for achieving automated CFD simulation of data centers with open-source tools.
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| 19. |
- Liu, Zhenyu, et al.
(author)
-
Numerical Modeling of Multiple Bubbles Condensation in Subcooled Flow Boiling
- 2015
-
In: Journal of Thermal Science and Engineering Apllications. - : ASME International. - 1948-5093 .- 1948-5085. ; 7:3
-
Journal article (peer-reviewed)abstract
- The understanding of multiple bubbles condensation is of significant importance in developing continuum models for the large-scale subcooled flow boiling. The computational fluid dynamics (CFD) modeling for multiple bubbles condensation is developed with the volume of fluid (VOF) method in this work. An explicit transient simulation is performed to solve the governing equations including the source terms for heat and mass transfer due to condensation. The geometric reconstruction scheme, which is a piecewise linear interface calculation (PLIC) method, is employed to keep the interface sharp. The surface tension is modeled by the continuum surface force (CSF) approach, which is taken into account in the numerical model. Numerical simulations predict the dynamical behavior of the actual condensing bubbles. The results show that the condensation rate of a single bubble is influenced by the velocity of the fluid flow and the temperature difference between the bubble and fluid. For multiple bubbles, the effect of bubble-bubble interaction on their condensation process is analyzed based on the numerical predictions. The condensation rate of lower bubbles increases due to the random perturbation induced by other bubbles. The influence of other bubbles on the condensation rate can be neglected if the distances between the bubbles are large enough.
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| 20. |
- Liu, Zhenyu, et al.
(author)
-
Numerical Modelling of Condensation of Multiple Bubbles in Subcooled Flow Boiling with VOF Method
- 2014
-
In: Proceedings of the ASME Summer Heat Transfer Conference - 2013, Vol 1. ; , s. 001-014
-
Conference paper (peer-reviewed)abstract
- The understanding of condensation of multiple bubbles is of importance to improve the continuum models for the large-scale subcooled flow boiling. The CFD modeling for condensation of multiple bubbles has been developed with the Volume of Fluid (VOF) method in this work. An explicit transient simulation is performed to solve the governing equations along with the VOF equation and source terms for condensation. The Geometric Reconstruction Scheme, which is a Piecewise Linear Interface Calculation (PLIC) method, is employed to keep the interface sharp. The surface tension is modeled by the Continuum Surface Force (CSF) approach and is taken into account in the computations. Numerical simulation predicts the behavior of the actual condensing bubbles. The condensation rate of a single bubble can be influenced by the velocity of the fluid flow and the temperature difference between the bubble and fluid. The effect of interaction of the bubbles on the condensation is analyzed based on the numerical predictions. The condensation rate of lower bubbles increases due to the random perturbation induced by other bubbles. The influence of other bubbles on the condensation rate can be neglected if the distances between the bubbles are large enough.
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| 21. |
- Liu, Zhenyu, et al.
(author)
-
VOF MODELING AND ANALYSIS OF FILMWISE CONDENSATION BETWEEN VERTICAL PARALLEL PLATES
- 2012
-
In: Heat Transfer Research. - 1064-2285. ; 43:1, s. 47-68
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Journal article (peer-reviewed)abstract
- In this study, a computational model has been developed to predict condensation heat transfer between vertical parallel plates. Transient simulations of filmwise condensation in a small two-dimensional parallel plate passage are performed. The Volume of Fluid (VOF) method is used to track the vapor liquid interface. The Geometric Reconstruction Scheme, which is a Piecewise Linear Interface Calculation (PLIC) method, is employed to keep the interface sharp. The governing equations and the VOF equation with relevant source terms for condensation are solved explicitly. The surface tension is taken into account in the modeling and it is evaluated by the Continuum Surface Force (CSF) approach. Different methods to evaluate the source terms in the VOF and energy equations are summarized based on previous studies. The simulation is performed using the CFD software package, Ansys Fluent, and an in-house developed code. This in-house code is specifically developed to calculate the source terms associated with phase change, which are deduced from the Hertz-Knudsen equation based on the kinetic gas theory. The predicted results show that a laminar regime exists at the top of the wall, where the film is the thinnest. A wavy regime appears as a series of regular ripples/waves of condensate moving downwards under the action of both gravity and shear stress in the interface area. As a further step, the simulations have been run under different surface tension, wall temperature, and inlet velocity conditions. The predictions also indicate that the wave peak height decreases with increasing surface tension and decreases with increasing inlet velocity. This has an effect on the heat transfer characteristics of the condensation process. The condensation heat transfer increases sharply by increasing the temperature difference between the wall and saturation temperature of the inlet steam.
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| 22. |
- Wang, Fang, et al.
(author)
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Emerging contaminants: A One Health perspective
- 2024
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In: Innovation. - 2666-6758. ; 5
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Research review (peer-reviewed)abstract
- Environmental pollution is escalating due to rapid global development that often prioritizes human needs over planetary health. Despite global efforts to mitigate legacy pollutants, the continuous introduction of new substances remains a major threat to both people and the planet. In response, global initiatives are focusing on risk assessment and regulation of emerging contaminants, as demonstrated by the ongoing efforts to establish the UN's Intergovernmental Science-Policy Panel on Chemicals, Waste, and Pollution Prevention. This review identifies the sources and impacts of emerging contaminants on planetary health, emphasizing the importance of adopting a One Health approach. Strategies for monitoring and addressing these pollutants are discussed, underscoring the need for robust and socially equitable environmental policies at both regional and international levels. Urgent actions are needed to transition toward sustainable pollution management practices to safeguard our planet for future generations.
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| 23. |
- Wang, Zhiqi, et al.
(author)
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Topology Optimization of Passive Cell Traps
- 2021
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In: Micromachines. - : MDPI. - 2072-666X. ; 12:7
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Journal article (peer-reviewed)abstract
- This paper discusses a flexible design method of cell traps based on the topology optimization of fluidic flows. Being different from the traditional method, this method obtains the periodic layout of the cell traps according to the cell trapping requirements by proposing a topology optimization model. Additionally, it satisfies the cell trapping function by restricting the flow distribution while taking into account the overall energy dissipation of the flow field. The dependence on the experience of the designer is reduced when this method is used to design a cell trap with acceptable trapping performance. By comparing the influence of the changes of various parameters on the optimization results, the flexibility of the topology optimization method for cell trap structure optimization is verified. The capability of this design method is validated by several performed comparisons between the obtained layouts and optimized designs in the published literature.
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| 24. |
- Zhang, Shunming, et al.
(author)
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Adherence to a healthy lifestyle including sleep and sedentary behaviors and risk of metabolic dysfunction-associated steatotic liver disease in Chinese adults
- 2024
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In: Preventive Medicine. - 0091-7435. ; 184
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Journal article (peer-reviewed)abstract
- Objective: Various lifestyle factors including smoking, alcohol, physical activity, sedentary behavior, diet quality, sleep behavior, and overweight have been related to metabolic dysfunction-associated steatotic liver disease (MASLD); however, their joint impact on risk of MASLD is not well known. We prospectively investigated the association between a combination of lifestyle factors and risk of MASLD. Methods: This prospective cohort study included 13,303 participants (mean age: 39.1 ± 11.3 years, female: 60.1%) in China. A novel healthy lifestyle score was created combining seven healthy factors: not smoking, no alcohol intake, regular physical activity, short sedentary time, healthy diet, healthy sleep, and healthy weight. Incident MASLD cases were ascertained annually by liver ultrasound and cardiometabolic risk factors. Multivariable Cox proportional hazards regression models were used to estimate the association of healthy lifestyle score with risk of MASLD. Results: Within 48,036 person-years of follow-up, 2823 participants developed MASLD. After adjusting for age, sex, education, occupation, household income, personal and family history of disease, and total energy intake, compared with participants with 0–2 healthy lifestyle factors, the multivariable hazard ratios (95% confidence interval) of MASLD were 0.81 (0.73, 0.89), 0.67 (0.61, 0.75), and 0.55 (0.49, 0.62) for healthy lifestyle score of 3, 4, and 5–7, respectively (P for trend <0.0001). Such associations were consistent across subgroup and sensitivity analyses. Conclusion: Our results indicate that a higher healthy lifestyle score is associated with a lower risk of MASLD.
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| 25. |
- Zhang, Shunming, et al.
(author)
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Associations of the EAT-Lancet reference diet with metabolic dysfunction-associated steatotic liver disease and its severity : a multi-cohort study
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In: Hepatology. - 1527-3350.
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Journal article (peer-reviewed)abstract
- BACKGROUND AIMS: The EAT-Lancet Commission devised a globally sustainable dietary pattern to jointly promote human health and sustainability. However, the extent to which this diet supports metabolic dysfunction-associated steatotic liver disease (MASLD) has not yet been assessed. This study aimed to investigate the association between the EAT-Lancet diet and risk of MASLD and its severity.APPROACH RESULTS: This prospective multi-cohort study included 15,263 adults from the Tianjin Chronic Low-grade Systemic Inflammation and Health (TCLSIH) cohort, 1,137 adults from the Guangzhou Nutrition and Health Study (GNHS) cohort, and 175,078 adults from the UK Biobank. Additionally, 228 Chinese adults from the Prospective Epidemic Research Specifically of Non-alcoholic Steatohepatitis (PERSONS) with biopsy-proven MASLD were included. An EAT-Lancet diet index was created to reflect adherence to the EAT-Lancet reference diet. The TCLSIH cohort recorded 3,010 MASLD cases during 53,575 person-years of follow-up, the GNHS cohort documented 624 MASLD cases during 6,454 person-years of follow-up, and the UK Biobank 1,350 developed MASLD cases during 1,745,432 person-years of follow-up. In multivariable models, participants in the highest tertiles of the EAT-Lancet diet index had a lower risk of MASLD compared with those in the lowest tertiles (TCLSIH: HR=0.87, 95% CI: 0.78, 0.96; GNHS: HR=0.79, 95% CI: 0.64, 0.98; UK Biobank: HR=0.73, 95% CI: 0.63, 0.85). Moreover, liver controlled attenuation parameter decreased with increasing the diet index in individuals with biopsy-proven MASLD (β=-5.895; 95% CI: -10.014, -1.775).CONCLUSIONS: Adherence to the EAT-Lancet reference diet was inversely associated with risk of MASLD as well as its severity.
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| 26. |
- Zhang, Wei, et al.
(author)
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Critical Role of Phosphorus in Hollow Structures Cobalt-Based Phosphides as Bifunctional Catalysts for Water Splitting
- 2022
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In: Small. - : Wiley. - 1613-6810 .- 1613-6829. ; 18:4
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Journal article (peer-reviewed)abstract
- Cobalt phosphides electrocatalysts have great potential for water splitting, but the unclear active sides hinder the further development of cobalt phosphides. Wherein, three different cobalt phosphides with the same hollow structure morphology (CoP-HS, CoP2-HS, CoP3-HS) based on the same sacrificial template of ZIF-67 are prepared. Surprisingly, these cobalt phosphides exhibit similar OER performances but quite different HER performances. The identical OER performance of these CoPx-HS in alkaline solution is attributed to the similar surface reconstruction to CoOOH. CoP-HS exhibits the best catalytic activity for HER among these CoPx-HS in both acidic and alkaline media, originating from the adjusted electronic density of phosphorus to affect absorption–desorption process on H. Moreover, the calculated ΔGH* based on P-sites of CoP-HS follows a quite similar trend with the normalized overpotential and Tafel slope, indicating the important role of P-sites for the HER process. Moreover, CoP-HS displays good performance (cell voltage of 1.67 V at a current density of 50 mA cm−2) and high stability in 1 M KOH. For the first time, this work detailly presents the critical role of phosphorus in cobalt-based phosphides for water splitting, which provides the guidance for future investigations on transition metal phosphides from material design to mechanism understanding.
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