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| 2. |
- Fu, Jianxin, et al.
(author)
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Loss of intestinal core 1-derived O-glycans causes spontaneous colitis in mice.
- 2011
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In: The Journal of clinical investigation. - 1558-8238. ; 121:4, s. 1657-66
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Journal article (peer-reviewed)abstract
- Mucin-type O-linked oligosaccharides (O-glycans) are primary components of the intestinal mucins that form the mucus gel layer overlying the gut epithelium. Impaired expression of intestinal O-glycans has been observed in patients with ulcerative colitis (UC), but its role in the etiology of this disease is unknown. Here, we report that mice with intestinal epithelial cell-specific deficiency of core 1-derived O-glycans, the predominant form of O-glycans, developed spontaneous colitis that resembled human UC, including massive myeloid infiltrates and crypt abscesses. The colitis manifested in these mice was also characterized by TNF-producing myeloid infiltrates in colon mucosa in the absence of lymphocytes, supporting an essential role for myeloid cells in colitis initiation. Furthermore, induced deletion of intestinal core 1-derived O-glycans caused spontaneous colitis in adult mice. These data indicate a causal role for the loss of core 1-derived O-glycans in colitis. Finally, we detected a biosynthetic intermediate typically exposed in the absence of core 1 O-glycan, Tn antigen, in the colon epithelium of a subset of UC patients. Somatic mutations in the X-linked gene that encodes core 1 β1,3-galactosyltransferase-specific chaperone 1 (C1GALT1C1, also known as Cosmc), which is essential for core 1 O-glycosylation, were found in Tn-positive epithelia. These data suggest what we believe to be a new molecular mechanism for the pathogenesis of UC.
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| 3. |
- Houshuai, Wang, et al.
(author)
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Molecular phylogeny of Lymantriinae (Lepidoptera, Noctuoidea, Erebidae) inferred from eight gene regions
- 2015
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In: Cladistics. - : Wiley. - 0748-3007 .- 1096-0031. ; 31:6, s. 579-592
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Journal article (peer-reviewed)abstract
- To understand the evolutionary history of Lymantriinae and test the present higher-level classification, we performed the first broad-scale molecular phylogenetic analysis of the subfamily, based on 154 exemplars representing all recognized tribes and drawn from all major biogeographical regions. We used two mitochondrial genes (cytochrome c oxidase subunit I and 16S ribosomal RNA) and six nuclear genes (elongation factor-1α, carbamoylphosphate synthase domain protein, ribosomal protein S5, cytosolic malate dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase and wingless). Data matrices (in total 5424 bp) were analysed by parsimony and model-based evolutionary methods (maximum likelihood and Bayesian inference). Based on the results of the analyses, we present a new phylogenetic classification for Lymantriinae composed of seven well-supported tribes, two of which are proposed here as new: Arctornithini, Leucomini, Lymantriini, Orgyiini, Nygmiini, Daplasini trib. nov. and Locharnini trib. nov. We discuss the internal structure of each of these tribes and address some of the more complex problems with the genus-level classification, particularly within Orgyiini and Nygmiini.
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| 4. |
- Kristan, Matej, et al.
(author)
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The Visual Object Tracking VOT2016 Challenge Results
- 2016
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In: COMPUTER VISION - ECCV 2016 WORKSHOPS, PT II. - Cham : SPRINGER INT PUBLISHING AG. - 9783319488813 - 9783319488806 ; , s. 777-823
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Conference paper (peer-reviewed)abstract
- The Visual Object Tracking challenge VOT2016 aims at comparing short-term single-object visual trackers that do not apply pre-learned models of object appearance. Results of 70 trackers are presented, with a large number of trackers being published at major computer vision conferences and journals in the recent years. The number of tested state-of-the-art trackers makes the VOT 2016 the largest and most challenging benchmark on short-term tracking to date. For each participating tracker, a short description is provided in the Appendix. The VOT2016 goes beyond its predecessors by (i) introducing a new semi-automatic ground truth bounding box annotation methodology and (ii) extending the evaluation system with the no-reset experiment.
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| 5. |
- Kristan, Matej, et al.
(author)
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The Visual Object Tracking VOT2017 challenge results
- 2017
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In: 2017 IEEE INTERNATIONAL CONFERENCE ON COMPUTER VISION WORKSHOPS (ICCVW 2017). - : IEEE. - 9781538610343 ; , s. 1949-1972
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Conference paper (peer-reviewed)abstract
- The Visual Object Tracking challenge VOT2017 is the fifth annual tracker benchmarking activity organized by the VOT initiative. Results of 51 trackers are presented; many are state-of-the-art published at major computer vision conferences or journals in recent years. The evaluation included the standard VOT and other popular methodologies and a new "real-time" experiment simulating a situation where a tracker processes images as if provided by a continuously running sensor. Performance of the tested trackers typically by far exceeds standard baselines. The source code for most of the trackers is publicly available from the VOT page. The VOT2017 goes beyond its predecessors by (i) improving the VOT public dataset and introducing a separate VOT2017 sequestered dataset, (ii) introducing a realtime tracking experiment and (iii) releasing a redesigned toolkit that supports complex experiments. The dataset, the evaluation kit and the results are publicly available at the challenge website(1).
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| 6. |
- Li, Tingting, et al.
(author)
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Importance of vegetation classes in modeling CH4 emissions from boreal and subarctic wetlands in Finland
- 2016
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In: Science of the Total Environment. - : Elsevier BV. - 0048-9697. ; 572, s. 1111-1122
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Journal article (peer-reviewed)abstract
- Boreal/arctic wetlands are dominated by diverse plant species, which vary in their contribution to CH4 production, oxidation and transport processes. Earlier studies have often lumped the processes all together, which may induce large uncertainties into the results. We present a novel model, which includes three vegetation classes and can be used to simulate CH4 emissions from boreal and arctic treeless wetlands. The model is based on an earlier biogeophysical model, CH4MODwetland. We grouped the vegetation as graminoids, shrubs and Sphagnum and recalibrated the vegetation parameters according to their different CH4 production, oxidation and transport capacities. Then, we used eddy-covariance-based CH4 flux observations from a boreal (Siikaneva) and a subarctic fen (Lompolojänkkä) in Finland to validate the model. The results showed that the recalibrated model could generally simulate the seasonal patterns of the Finnish wetlands with different plant communities. The comparison between the simulated and measured daily CH4 fluxes resulted in a correlation coefficient (R 2 ) of 0.82 with a slope of 1.0 and an intercept of -0.1mgm-2 h-1 for the Siikaneva site (n=2249, p<0.001) and an R2 of 0.82 with a slope of 1.0 and an intercept of 0.0mgm-2 h-1 for the Lompolojänkkä site (n=1826, p<0.001). Compared with the original model, the recalibrated model in this study significantly improved the model efficiency (EF), from -5.5 to 0.8 at the Siikaneva site and from -0.4 to 0.8 at the Lompolojänkkä site. The simulated annual CH4 emissions ranged from 7 to 24gm-2 yr-1, which was consistent with the observations (7-22gm-2 yr-1). However, there are some discrepancies between the simulated and observed daily CH4 fluxes for the Siikaneva site (RMSE =50.0%) and the Lompolojänkkä site (RMSE =47.9%). Model sensitivity analysis showed that increasing the proportion of the graminoids would significantly increase the CH4 emission levels. Our study demonstrated that the parameterization of the different vegetation processes was important in estimating long-term wetland CH4 emissions.
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| 7. |
- Sun, Jingwu, et al.
(author)
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From electronic structure to combustion model application for acrolein chemistry Part Ⅱ : Acrolein + HȮ2 reactions and the development of acrolein sub-mechanism
- 2023
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In: Combustion and Flame. - : Elsevier BV. - 0010-2180. ; 251
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Journal article (peer-reviewed)abstract
- Acrolein, as one of the most hazardous aldehydes, can be formed among the carbonyls from the combustion of bio-fuels or mixtures of bio- and conventional fuels. Moreover, acrolein is also an important combustion intermediate in the oxidations of higher unsaturated hydrocarbons. A deep understanding of acrolein combustion chemistry will be useful for the kinetic modeling of higher hydrocarbons and ultimately practical fuels, with the acrolein reaction subset expected to be an important building block. In this work, the reaction system of acrolein + HȮ2, which is critical in controlling the reactivity of acrolein at low to intermediate temperatures (800–1000 K), was theoretically studied. Subsequently, by lumping the data calculated in this study, its companion work on the reaction system of acrolein + Ḣ in Part Ⅰ, other related high precision theoretical calculation studies and the relevant data estimated in the trusted models, a detailed chemical kinetic sub-mechanism has been developed to describe the directly related combustion reactions of acrolein. The kinetic, thermodynamic and transport data in the acrolein sub-mechanism were used to update and develop the base mechanism, AramcoMech 3.0. The updated model was then validated against ignition delay times (IDT) of acrolein measured in shock tube by Chatelain et al. [Fuel 135 (2014) 498], burning velocity of acrolein measured by Gibbs and Calcote [J. Chem. Engineer. Data 4 (1959) 226], species profiles from jet-stirred reactor for propene oxidation presented by Burke et al. [Combustion and Flame 161 (2014) 2765].
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| 8. |
- Zhang, Guojie, et al.
(author)
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Comparative genomics reveals insights into avian genome evolution and adaptation
- 2014
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In: Science. - : American Association for the Advancement of Science (AAAS). - 0036-8075 .- 1095-9203. ; 346:6215, s. 1311-1320
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Journal article (peer-reviewed)abstract
- Birds are the most species-rich class of tetrapod vertebrates and have wide relevance across many research fields. We explored bird macroevolution using full genomes from 48 avian species representing all major extant clades. The avian genome is principally characterized by its constrained size, which predominantly arose because of lineage-specific erosion of repetitive elements, large segmental deletions, and gene loss. Avian genomes furthermore show a remarkably high degree of evolutionary stasis at the levels of nucleotide sequence, gene synteny, and chromosomal structure. Despite this pattern of conservation, we detected many non-neutral evolutionary changes in protein-coding genes and noncoding regions. These analyses reveal that pan-avian genomic diversity covaries with adaptations to different lifestyles and convergent evolution of traits.
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