| 1. |
- Sanli, Kemal, et al.
(author)
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Metagenomic Sequencing of Marine Periphyton: Taxonomic and Functional Insights into Biofilm Communities
- 2015
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In: Frontiers in Microbiology. - : Frontiers Media SA. - 1664-302X. ; 6:1192
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Journal article (peer-reviewed)abstract
- Periphyton communities are complex phototrophic, multispecies biofilms that develop on surfaces in aquatic environments. These communities harbor a large diversity of organisms comprising viruses, bacteria, algae, fungi, protozoans and metazoans. However, thus far the total biodiversity of periphyton has not been described. In this study, we use metagenomics to characterize periphyton communities from the marine environment of the Swedish west coast. Although we found approximately ten times more eukaryotic rRNA marker gene sequences compared to prokaryotic, the whole metagenome-based similarity searches showed that bacteria constitute the most abundant phyla in these biofilms. We show that marine periphyton encompass a range of heterotrophic and phototrophic organisms. Heterotrophic bacteria, including the majority of proteobacterial clades and Bacteroidetes, and eukaryotic macro-invertebrates were found to dominate periphyton. The phototrophic groups comprise Cyanobacteria and the alpha-proteobacterial genus Roseobacter, followed by different micro- and macro-algae. We also assess the metabolic pathways that predispose these communities to an attached lifestyle. Functional indicators of the biofilm form of life in periphyton involve genes coding for enzymes that catalyze the production and degradation of extracellular polymeric substances, mainly in the form of complex sugars such as starch and glycogen-like meshes together with chitin. Genes for 278 different transporter proteins were detected in the metagenome, constituting the most abundant protein complexes. Finally, genes encoding enzymes that participate in anaerobic pathways, such as denitrification and methanogenesis, were detected suggesting the presence of anaerobic or low-oxygen micro-zones within the biofilms.
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| 2. |
- Radek, Renate, et al.
(author)
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Morphologic and molecular data help adopting the insect-pathogenic nephridiophagids (Nephridiophagidae) among the early diverging fungal lineages, close to the Chytridiomycota
- 2017
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In: MycoKeys. - : Pensoft Publishers. - 1314-4057 .- 1314-4049. ; 25, s. 31-50
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Journal article (peer-reviewed)abstract
- Nephridiophagids are poorly known unicellular eukaryotes, previously of uncertain systematic position, that parasitize the Malpighian tubules of insects. Their life cycle includes merogony with multinucleate plasmodia and sporogony leading to small, uninucleate spores. We examined the phylogenetic affiliations of three species of Nephridiophaga, including one new species, Nephridiophaga maderae, from the Madeira cockroach (Leucophaea maderae). In addition to the specific host, the new species differs from those already known by the size of the spores and by the number of spores within the sporogenic plasmodium. The inferred phylogenetic analyses strongly support a placement of the nephridiophagids in the fungal kingdom near its root and with a close, but unresolved, relationship to the chytids (Chytridiomycota). We found evidence for the nephridiophagidean speciation as being strongly coupled to host speciation.
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| 3. |
- Nilsson, R. Henrik, 1976, et al.
(author)
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Mycobiome diversity: high-throughput sequencing and identification of fungi.
- 2019
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In: Nature reviews. Microbiology. - : Springer Science and Business Media LLC. - 1740-1534 .- 1740-1526. ; 17, s. 95-109
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Research review (peer-reviewed)abstract
- Fungi are major ecological players in both terrestrial and aquatic environments by cycling organic matter and channelling nutrients across trophic levels. High-throughput sequencing (HTS) studies of fungal communities are redrawing the map of the fungal kingdom by hinting at its enormous - and largely uncharted - taxonomic and functional diversity. However, HTS approaches come with a range of pitfalls and potential biases, cautioning against unwary application and interpretation of HTS technologies and results. In this Review, we provide an overview and practical recommendations for aspects of HTS studies ranging from sampling and laboratory practices to data processing and analysis. We also discuss upcoming trends and techniques in the field and summarize recent and noteworthy results from HTS studies targeting fungal communities and guilds. Our Review highlights the need for reproducibility and public data availability in the study of fungal communities. If the associated challenges and conceptual barriers are overcome, HTS offers immense possibilities in mycology and elsewhere.
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| 4. |
- Sigvald, Roland, et al.
(author)
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Molecular identification of bloodmeals and species composition in Culicoides biting midges
- 2013
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In: Medical and Veterinary Entomology. - : Wiley. - 0269-283X .- 1365-2915. ; 27, s. 104-112
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Journal article (peer-reviewed)abstract
- Investigations of host preferences in haematophagous insects, including Culicoides biting midges (Diptera: Ceratopogonidae), are critical in order to assess transmission routes of vector-borne diseases. In this study, we collected and morphologically identified 164 blood-engorged Culicoides females caught in both light traps and permanent 12-m high suction traps during 20082010 in Sweden. Molecular analysis of the mitochondrial cytochrome c oxidase subunit I (COI) gene in the biting midges was performed to verify species classification, discern phylogenetic relationships and uncover possible cryptic species. Bloodmeal analysis using universal vertebrate cytochrome b primers revealed a clear distinction in host selection between mammalophilic and ornithophilic Culicoides species. Host sequences found matches in horse (n = 59), sheep (n = 39), cattle (n = 26), Eurasian elk (n = 1) and 10 different bird species (n = 18). We identified 15 Culicoides species previously recorded in Scandinavia and four additional species haplotypes that were distinctly different from the described species. All ornithophilic individuals (n = 23) were caught exclusively in the suction traps, as were, interestingly, almost all mammalophilic species (n = 41), indicating that many biting midge species may be able to cover long distances after completing a bloodmeal. These results add new information on the composition of Culicoides species and their host preferences and their potential long-distance dispersal while blood-engorged.
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| 5. |
- Alm Rosenblad, Magnus, 1957, et al.
(author)
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Detection of signal recognition particle (SRP) RNAs in the nuclear ribosomal internal transcribed spacer 1 (ITS1) of three lineages of ectomycorrhizal fungi (Agaricomycetes, Basidiomycota)
- 2016
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In: MycoKeys. - : Pensoft Publishers. - 1314-4057 .- 1314-4049. ; 13, s. 21-33
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Journal article (peer-reviewed)abstract
- During a routine scan for Signal Recognition Particle (SRP) RNAs in eukaryotic sequences, we surprisingly found in silico evidence in GenBank for a 265-base long SRP RNA sequence in the ITS1 region of a total of 11 fully identified species in three ectomycorrhizal genera of the Basidiomycota (Fungi): Astraeus, Russula, and Lactarius. To rule out sequence artifacts, one specimen from a species indicated to have the SRP RNA-containing ITS region in each of these genera was ordered and re-sequenced. Sequences identical to the corresponding GenBank entries were recovered, or in the case of a non-original but conspecific specimen differed by three bases, showing that these species indeed have an SRP RNA sequence incorporated into their ITS1 region. Other than the ribosomal genes, this is the first known case of non-coding RNAs in the eukaryotic ITS region, and it may assist in the examination of other types of insertions in fungal genomes.
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| 6. |
- Nilsson, R. Henrik, 1976, et al.
(author)
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How, not if, is the question mycologists should be asking about DNA-based typification
- 2023
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In: MycoKeys. - : Pensoft Publishers. - 1314-4057 .- 1314-4049. ; :96, s. 143-157
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Journal article (peer-reviewed)abstract
- Fungal metabarcoding of substrates such as soil, wood, and water is uncovering an unprecedented number of fungal species that do not seem to produce tangible morphological structures and that defy our best attempts at cultivation, thus falling outside the scope of the International Code of Nomenclature for algae, fungi, and plants. The present study uses the new, ninth release of the species hypotheses of the UNITE database to show that species discovery through environmental sequencing vastly outpaces traditional, Sanger sequencing-based efforts in a strongly increasing trend over the last five years. Our findings chal-lenge the present stance of some in the mycological community - that the current situation is satisfactory and that no change is needed to "the code" - and suggest that we should be discussing not whether to allow DNA-based descriptions (typifications) of species and by extension higher ranks of fungi, but what the precise requirements for such DNA-based typifications should be. We submit a tentative list of such criteria for further discussion. The present authors hope for a revitalized and deepened discussion on DNA-based typification, because to us it seems harmful and counter-productive to intentionally deny the overwhelming majority of extant fungi a formal standing under the International Code of Nomenclature for algae, fungi, and plants.
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| 7. |
- Anslan, Sten, et al.
(author)
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Great differences in performance and outcome of high-throughput sequencing data analysis platforms for fungal metabarcoding
- 2018
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In: MycoKeys. - : Pensoft Publishers. - 1314-4057 .- 1314-4049. ; 39, s. 29-40
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Journal article (peer-reviewed)abstract
- Along with recent developments in high-throughput sequencing (HTS) technologies and thus fast accumulation of HTS data, there has been a growing need and interest for developing tools for HTS data processing and communication. In particular, a number of bioinformatics tools have been designed for analysing metabarcoding data, each with specific features, assumptions and outputs. To evaluate the potential effect of the application of different bioinformatics workflow on the results, we compared the performance of different analysis platforms on two contrasting high-throughput sequencing data sets. Our analysis revealed that the computation time, quality of error filtering and hence output of specific bioinformatics process largely depends on the platform used. Our results show that none of the bioinformatics workflows appears to perfectly filter out the accumulated errors and generate Operational Taxonomic Units, although PipeCraft, LotuS and PIPITS perform better than QIIME2 and Galaxy for the tested fungal amplicon dataset. We conclude that the output of each platform requires manual validation of the OTUs by examining the taxonomy assignment values.
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| 8. |
- Nilsson, R. Henrik, 1976, et al.
(author)
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The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications.
- 2019
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In: Nucleic acids research. - : Oxford University Press (OUP). - 1362-4962 .- 0305-1048. ; 47:D1
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Journal article (peer-reviewed)abstract
- UNITE (https://unite.ut.ee/) is a web-based database and sequence management environment for the molecular identification of fungi. It targets the formal fungal barcode-the nuclear ribosomal internal transcribed spacer(ITS) region-and offers all ∼1 000000 public fungal ITS sequences for reference. These are clustered into ∼459000 species hypotheses and assigned digital object identifiers (DOIs) to promote unambiguous reference across studies. In-house and web-based third-party sequence curation and annotation have resulted in more than 275000 improvements to the data over the past 15 years. UNITE serves as a data provider for a range of metabarcoding software pipelines and regularly exchanges data with all major fungal sequence databases and other community resources. Recent improvements include redesigned handling of unclassifiable species hypotheses, integration with the taxonomic backbone of the Global Biodiversity Information Facility, and support for an unlimited number of parallel taxonomic classification systems.
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| 9. |
- Retter, Alice, et al.
(author)
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Exploring the taxonomic composition of two fungal communities on the Swedish west coast through metabarcoding
- 2019
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In: Biodiversity Data Journal. - 1314-2828 .- 1314-2836. ; 7
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Journal article (peer-reviewed)abstract
- Background Fungi are heterotrophic, unicellular or filamentous organisms that exhibit a wide range of different lifestyles as, e.g., symbionts, parasites, and saprotrophs. Mycologists have traditionally considered fungi to be a nearly exclusively terrestrial group of organisms, but it is now known that fungi have a significant presence in aquatic environments as well. We know little about most fungi in limnic and marine systems, including aspects of their taxonomy, ecology, and geographic distribution. The present study seeks to improve our knowledge of fungi in the marine environment. The fungal communities of two coastal marine environments of the Kattegat sea, Sweden, were explored with metabarcoding techniques using the nuclear ribosomal internal transcribed spacer 2 (ITS2) metabarcode. Our data add new information to the current picture of fungal community composition in benthic and coastal habitats in Northern Europe. New information The dataset describes the number of operational taxonomic units (OTUs) and their taxonomic affiliations in two littoral gradients sampled on the Swedish west coast, Gothenburg municipality. Our data include basic diversity indices as well as chemical and edaphic sediment/soil parameters of the sampling sites. From the sites, 3470 and 4315 fungal OTUs, respectively, were recovered. The number of reads were 673,711 and 779,899, respectively, after quality filtering. Within the benthic sites, more than 80% of the sequences could not be classified taxonomically. The phylum composition of the classifiable sequences was dominated in both localities by Dikarya, which made up around 33% of the OTUs. Within Dikarya, Ascomycota was the dominant phylum. Guild assignment failed for more than half of the classifiable OTUs, with undefined saprotrophs being the most common resolved guild. This guild classification was slightly more common in the ocean sediment samples than in the terrestrial ones. Our metadata indicated that ocean sites contain organisms at a lower trophic level and that there are predominantly endophytic, parasitic, and pathogenic fungi in the marine environments. This hints at the presence of interesting and currently poorly understood fungus-driven ecological processes. It is also clear from our results that a very large number of marine fungi are in urgent need of taxonomic study and formal description.
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| 10. |
- Gómez-Martínez, Daniela, et al.
(author)
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Phenotypic and transcriptomic acclimation of the green microalga Raphidocelis subcapitata to high environmental levels of the herbicide diflufenican
- 2023
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In: Science of the Total Environment. - : Elsevier BV. - 0048-9697 .- 1879-1026. ; 875
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Journal article (peer-reviewed)abstract
- Herbicide pollution poses a worldwide threat to plants and freshwater ecosystems. However, the understanding of how organisms develop tolerance to these chemicals and the associated trade-off expenses are largely unknown. This study aims to investigate the physiological and transcriptional mechanisms underlying the acclimation of the green microalgal model species Raphidocelis subcapitata (Selenastraceae) towards the herbicide diflufenican, and the fitness costs associated with tolerance development. Algae were exposed for 12 weeks (corresponding to 100 generations) to diflufenican at the two environmental concentrations 10 and 310 ng/L. The monitoring of growth, pigment composition, and photosynthetic performance throughout the experiment revealed an initial dose-dependent stress phase (week 1) with an EC50 of 397 ng/L, followed by a time-dependent recovery phase during weeks 2 to 4. After week 4, R. subcapitata was acclimated to diflufenican exposure with a similar growth rate, content of carotenoids, and photosynthetic performance as the unexposed control algae. This acclimation state of the algae was explored in terms of tolerance acquisition, changes in the fatty acids composition, diflufenican removal rate, cell size, and changes in mRNA gene expression profile, revealing potential fitness costs associated with acclimation, such as up-regulation of genes related to cell division, structure, morphology, and reduction of cell size. Overall, this study demonstrates that R. subcapitata can quickly acclimate to environmental but toxic levels of diflufenican; however, the acclimation is associated with trade-off expenses that result in smaller cell size.
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| 11. |
- Witzgall, Peter, et al.
(author)
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"This is not an Apple"-Yeast Mutualism in Codling Moth
- 2012
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In: Journal of Chemical Ecology. - : Springer Science and Business Media LLC. - 1573-1561 .- 0098-0331. ; 38:8, s. 949-957
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Journal article (peer-reviewed)abstract
- The larva of codling moth Cydia pomonella (Tortricidae, Lepidoptera) is known as the worm in the apple, mining the fruit for food. We here show that codling moth larvae are closely associated with yeasts of the genus Metschnikowia. Yeast is an essential part of the larval diet and further promotes larval survival by reducing the incidence of fungal infestations in the apple. Larval feeding, on the other hand, enables yeast proliferation on unripe fruit. Chemical, physiological and behavioral analyses demonstrate that codling moth senses and responds to yeast aroma. Female moths are attracted to fermenting yeast and lay more eggs on yeast-inoculated than on yeast-free apples. An olfactory response to yeast volatiles strongly suggests a contributing role of yeast in host finding, in addition to plant volatiles. Codling moth is a widely studied insect of worldwide economic importance, and it is noteworthy that its association with yeasts has gone unnoticed. Tripartite relationships between moths, plants, and microorganisms may, accordingly, be more widespread than previously thought. It, therefore, is important to study the impact of microorganisms on host plant ecology and their contribution to the signals that mediate host plant finding and recognition. A better comprehension of host volatile signatures also will facilitate further development of semiochemicals for sustainable insect control.
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| 12. |
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| 13. |
- Subhash, Santhilal, 1987, et al.
(author)
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Sperm Originated Chromatin Imprints and LincRNAs in Organismal Development and Cancer
- 2020
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In: iScience. - : Elsevier BV. - 2589-0042. ; 23:6
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Journal article (peer-reviewed)abstract
- Importance of sperm-derived transcripts and chromatin imprints in organismal development is poorly investigated. Here using an integrative approach, we show that human sperm transcripts are equally important as oocyte. Sperm-specific and sperm-oocyte common transcripts carry distinct chromatin structures at their promoters correlating with corresponding transcript levels in sperm. Interestingly, sperm-specific H3K4me3 patterns at the lincRNA promoters are not maintained in the germ layers and somatic tissues. However, bivalent chromatin at the sperm-specific protein-coding gene promoters is maintained throughout the development. Sperm-specific transcripts reach their peak expression during zygotic genome activation, whereas sperm-oocyte common transcripts are present during early preimplantation development but decline at the onset of zygotic genome activation. Additionally, there is an inverse correlation between sperm-specific and sperm-oocyte lincRNAs throughout the development. Sperm-lincRNAs also show aberrant activation in tumors. Overall, our observations indicate that sperm transcripts carrying chromatin imprints may play an important role in human development and cancer.
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| 14. |
- Lanzén, Anders, et al.
(author)
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Benthic eDNA metabarcoding provides accurate assessments of impact from oil extraction, and ecological insights
- 2021
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In: Ecological Indicators. - : Elsevier BV. - 1470-160X. ; 130
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Journal article (peer-reviewed)abstract
- Apart from its contribution to climate change, offshore oil and gas extraction is also a potential threat to the diversity and function of marine ecosystems. Routine monitoring of the environmental status of affected areas is therefore critical for effective management. While current morphology-based monitoring is relatively time consuming, costly and prone to identification bias, environmental DNA metabarcoding offers an attractive alternative for assessing the impacts of oil drilling, extraction or spills. However, to be ready for routine monitoring, its performance needs to be demonstrated through agreement with assessments based on physicochemical measurements and current bioindicators. To this end, we applied metabarcoding to sequence the metazoan (COI) and total eukaryotic (18S) benthic components. We targeted a range of sites, with a gradient of low to high level of impact, located near active production installations and reference sites, in the North and Barents Seas. Alpha diversity and community structure of both datasets correlated strongly with a physicochemical pressure index (PI) based on total hydrocarbons (THC), PAH16, Ba and Cu. Calculations of the macroinvertebrate-based Norwegian Sensitivity Index (NSI) based on COI metabarcoding data agreed well with corresponding morpho-taxonomy values and with the PI. Further, we identified a set of bioindicator taxa from both metabarcoding datasets, to develop novel biotic indices and demonstrate their predictive performance using cross-validation. Finally, we compared co-occurrence networks from impacted vs. non-impacted sites, to improve the understanding of the ecological consequences of impacts. Our study demonstrates that metabarcoding can act as a meaningful and relatively accurate complement to the current morpho-taxonomic approach.
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| 15. |
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| 16. |
- Crous, P. W., et al.
(author)
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Fusarium : more than a node or a foot-shaped basal cell
- 2021
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In: Studies in mycology. - : CENTRAALBUREAU SCHIMMELCULTURE. - 0166-0616 .- 1872-9797. ; :98
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Journal article (peer-reviewed)abstract
- Recent publications have argued that there are potentially serious consequences for researchers in recognising distinct genera in the terminal fusarioid clade of the family Nectriaceae. Thus, an alternate hypothesis, namely a very broad concept of the genus Fusarium was proposed. In doing so, however, a significant body of data that supports distinct genera in Nectriaceae based on morphology, biology, and phylogeny is disregarded. A DNA phylogeny based on 19 orthologous protein-coding genes was presented to support a very broad concept of Fusarium at the F1 node in Nectriaceae. Here, we demonstrate that re-analyses of this dataset show that all 19 genes support the F3 node that represents Fusarium sensu stricto as defined by F. sambucinum (sexual morph synonym Gibberella pulicaris). The backbone of the phylogeny is resolved by the concatenated alignment, but only six of the 19 genes fully support the F1 node, representing the broad circumscription of Fusarium. Furthermore, a re-analysis of the concatenated dataset revealed alternate topologies in different phylogenetic algorithms, highlighting the deep divergence and unresolved placement of various Nectriaceae lineages proposed as members of Fusarium. Species of Fusarium s. str. are characterised by Gibberella sexual morphs, asexual morphs with thin- or thick-walled macroconidia that have variously shaped apical and basal cells, and trichothecene mycotoxin production, which separates them from other fusarioid genera. Here we show that the Wollenweber concept of Fusarium presently accounts for 20 segregate genera with clear-cut synapomorphic traits, and that fusarioid macroconidia represent a character that has been gained or lost multiple times throughout Nectriaceae. Thus, the very broad circumscription of Fusarium is blurry and without apparent synapomorphies, and does not include all genera with fusarium-like macroconidia, which are spread throughout Nectriaceae (e.g., Cosmosporella, Macroconia, Microcera). In this study four new genera are introduced, along with 18 new species and 16 new combinations. These names convey information about relationships, morphology, and ecological preference that would otherwise be lost in a broader definition of Fusarium. To assist users to correctly identify fusarioid genera and species, we introduce a new online identification database, Fusarioid-ID, accessible at www.fusarium.org. The database comprises partial sequences from multiple genes commonly used to identify fusarioid taxa (act1, CaM, his3, rpb1, rpb2, tef1, tub2, ITS, and LSU). In this paper, we also present a nomenclator of names that have been introduced in Fusarium up to January 2021 as well as their current status, types, and diagnostic DNA barcode data. In this study, researchers from 46 countries, representing taxonomists, plant pathologists, medical mycologists, quarantine officials, regulatory agencies, and students, strongly support the application and use of a more precisely delimited Fusarium (= Gibberella) concept to accommodate taxa from the robust monophyletic node F3 on the basis of a well-defined and unique combination of morphological and biochemical features. This F3 node includes, among others, species of the F. fujikuroi, F. incarnatum-equiseti, F. oxysporum, and F. sambucinum species complexes, but not species of Bisifusarium [F. dimerum species complex (SC)], Cyanonectria (F. buxicola SC), Geejayessia (F. staphyleae SC), Neocosmospora (F. solani SC) or Rectifusarium (F. ventricosum SC). The present study represents the first step to generating a new online monograph of Fusarium and allied fusarioid genera (www.fusarium.org).
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| 17. |
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| 18. |
- Eriksson, Martin, 1970, et al.
(author)
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Triclosan changes community composition and selects for specific bacterial taxa in marine periphyton biofilms in low nanomolar concentrations
- 2020
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In: Ecotoxicology. - : Springer Science and Business Media LLC. - 0963-9292 .- 1573-3017. ; 29:7, s. 1083-1094
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Journal article (peer-reviewed)abstract
- The antibacterial agent Triclosan (TCS) is a ubiquitous environmental contaminant due to its widespread use. Sensitivity to TCS varies substantially among eu- and pro-karyotic species and its risk for the marine environment remains to be better elucidated. In particular, the effects that TCS causes on marine microbial communities are largely unknown. In this study we therefore used 16S amplicon rDNA sequencing to investigate TCS effects on the bacterial composition in marine periphyton communities that developed under long-term exposure to different TCS concentrations. Exposure to TCS resulted in clear changes in bacterial composition already at concentrations of 1 to 3.16 nM. We conclude that TCS affects the structure of the bacterial part of periphyton communities at concentrations that actually occur in the marine environment. Sensitive taxa, whose abundance decreased significantly with increasing TCS concentrations, include the Rhodobiaceae and Rhodobacteraceae families of Alphaproteobacteria, and unidentified members of the Candidate division Parcubacteria. Tolerant taxa, whose abundance increased significantly with higher TCS concentrations, include the families Erythrobacteraceae (Alphaproteobacteria), Flavobacteriaceae (Bacteroidetes), Bdellovibrionaceae (Deltaproteobacteria), several families of Gammaproteobacteria, and members of the Candidate phylum Gracilibacteria. Our results demonstrate the variability of TCS sensitivity among bacteria, and that TCS can change marine bacterial composition at concentrations that have been detected in the marine environment.
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| 19. |
- Bienert, Gern, 2008, et al.
(author)
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A subgroup of plant aquaporins facilitate the bi-directional diffusion of As(OH)3 and Sb(OH)3 across membranes
- 2008
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In: BMC Biology. - : Springer Science and Business Media LLC. - 1741-7007. ; 6:26
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Journal article (peer-reviewed)abstract
- Background Arsenic is a toxic and highly abundant metalloid that endangers human health through drinking water and the food chain. The most common forms of arsenic in the environment are arsenate (As(V)) and arsenite (As(III)). As(V) is a non-functional phosphate analog that enters the food chain via plant phosphate transporters. Inside cells, As(V) becomes reduced to As(III) for subsequent extrusion or compartmentation. Although much is known about As(III) transport and handling in microbes and mammals, the transport systems for As(III) have not yet been characterized in plants. Results Here we show that the Nodulin26-like Intrinsic Proteins (NIPs) AtNIP5;1 and AtNIP6;1 from Arabidopsis thaliana, OsNIP2;1 and OsNIP3;2 from Oryza sativa, and LjNIP5;1 and LjNIP6;1 from Lotus japonicus are bi-directional As(III) channels. Expression of these NIPs sensitized yeast cells to As(III) and antimonite (Sb(III)), and direct transport assays confirmed their ability to facilitate As(III) transport across cell membranes. On medium containing As(V), expression of the same NIPs improved yeast growth, probably due to increased As(III) efflux. Our data furthermore provide evidence that NIPs can discriminate between highly similar substrates and that they may have differential preferences in the direction of transport. A subgroup of As(III) permeable channels that group together in a phylogenetic tree required N-terminal truncation for functional expression in yeast. Conclusion This is the first molecular identification of plant As(III) transport systems and we propose that metalloid transport through NIPs is a conserved and ancient feature. Our observations are potentially of great importance for improved remediation and tolerance of plants, and may provide a key to the development of low arsenic crops for food production.
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| 20. |
- Janzon, Anders, 1978, et al.
(author)
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Exploring the microbial resistome in river sediments exposed to extraordinary high levels of antibiotics
- 2010
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In: 35th FEBS Congress: Molecules of Life.
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Conference paper (other academic/artistic)abstract
- The rapid development and propagation of antibiotic resistance in pathogenic and opportunistic bacteria is a major threat to public health worldwide. The phenomenon has been widely studied in the clinical setting, but comparatively little is known about the prevalence and diversity of antibiotic resistance in communities of environmental bacteria, often referred to as the environmental resistome. As the external environment may function as a reservoir of resistance genes to human pathogens, we are interested in how environmental bacteria are affected by antibiotic pollution. We have previously isolated microbial DNA from river sediments taken up- and downstream from a water treatment plant that processes waste water from several pharmaceutical plants producing antibiotics. In a previous study, we used deep sequencing to identify unprecedented frequencies of known resistance genes to several classes of antibiotics in these samples. In this study, we aim to functionally characterize the resistome in a more open and exploratory way by screening genomic DNA libraries transformed into sensitive hosts. To generate the libraries, several experimental strategies were explored, including mechanical shearing and enzymatic digestion of the isolated DNA followed by blunt- or sticky end cloning into different plasmids, subsequently transformed into sensitive E. coli. Pros and cons of the different strategies will be discussed along with preliminary results of the screening against selected antibiotics.
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| 21. |
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| 22. |
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| 23. |
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| 25. |
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| 26. |
- Förlin, Lars, 1950, et al.
(author)
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mRNA Expression and Biomarker Responses in Perch at a Biomonitoring Site in the Baltic Sea - Possible Influence of Natural Brominated Chemicals
- 2019
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In: Frontiers in Marine Science. - : Frontiers Media SA. - 2296-7745. ; 6
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Journal article (peer-reviewed)abstract
- Perch (Perca fluviatilis) has been used in biological effect monitoring in a program for integrated coastal fish monitoring at the reference site Kvadofjarden along the Swedish east coast, which is a site characterized by no or minor local anthropogenic influences. Using a set of physiological and biochemical endpoints (i.e., biomarkers), clear time trends for "early warning" signs of impaired health were noted in the perch from this site, possibly as a result of increased baseline pollution. The data sets also showed relatively large variations among years. To identify additional temporal variation in biological parameters, global mRNA expression studies using RNA sequencing was performed. Perch collected in 2010 and 2014 were selected, as they showed variations in several biomarkers, such as the activity of the detoxification enzyme CYP1A (EROD), the plasma levels of vitellogenin, markers for oxidative stress, white blood cells count and gonad sizes. The RNA sequencing study identified approximately 4800 genes with a significantly difference in mRNA expression levels. A gene ontology enrichment analysis showed that these differentially expressed genes were involved in biological processes such as complement activation, iron ion homeostasis and cholesterol biosynthetic process. In addition, differences in immune system parameters and responses to the exposure of toxic substances have now been verified in two different biological levels (mRNA and protein) in perch collected in 2010 and 2014. Markedly higher mRNA expression of the membrane transporter (MATE) and the detoxification enzyme COMT, together with higher concentrations of bioactive naturally produced brominated compounds, such as brominated indoles and carbazoles, seem to indicate that the perch collected in 2014 had been exposed to macro- and microalga blooming to a higher degree than did perch from 2010. These results and the differential mRNA expression between the 2 years in genes related to immune and oxidative stress parameters suggest that attention must be given to algae blooming when elucidating the well-being of the perch at Kvadofjarden and other Baltic coastal sites.
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| 27. |
- Wieloch, Thomas, 1979-, et al.
(author)
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Intramolecular carbon isotope signals reflect metabolite allocation in plants
- 2022
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In: Journal of Experimental Botany. - : Oxford University Press. - 0022-0957 .- 1460-2431. ; 73:8, s. 2558-2575
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Journal article (other academic/artistic)abstract
- Stable isotopes at natural abundance are key tools to study physiological processes occurring outside the temporal scope of manipulation and monitoring experiments. Whole-molecule carbon isotope ratios (13C/12C) enable assessments of plant carbon uptake yet conceal information about carbon allocation. Here, we identify an intramolecular 13C/12C signal at tree-ring glucose C-5 and C-6 and develop experimentally testable theories on its origin. More specifically, we assess the potential of processes within C3 metabolism for signal introduction based (inter alia) on constraints on signal propagation posed by metabolic networks. We propose that the intramolecular signal reports carbon allocation into major metabolic pathways in actively photosynthesizing leaf cells including the anaplerotic, shikimate, and non-mevalonate pathway. We support our theoretical framework by linking it to previously reported whole-molecule 13C/12C increases in cellulose of ozone-treated Betula pendula and a highly significant relationship between the intramolecular signal and tropospheric ozone concentration. Our theory postulates a pronounced preference for leaf cytosolic triose-phosphate isomerase to catalyse the forward reaction in vivo (dihydroxyacetone phosphate to glyceraldehyde 3-phosphate). In conclusion, intramolecular 13C/12C analysis resolves information about carbon uptake and allocation enabling more comprehensive assessments of carbon metabolism than whole-molecule 13C/12C analysis.
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| 28. |
- Boberg, Johanna, et al.
(author)
-
Nitrogen and Carbon Reallocation in Fungal Mycelia during Decomposition of Boreal Forest Litter
- 2014
-
In: PLOS ONE. - : Public Library of Science. - 1932-6203. ; 9:3, s. e92897-
-
Journal article (peer-reviewed)abstract
- Boreal forests are characterized by spatially heterogeneous soils with low N availability. The decomposition of coniferous litter in these systems is primarily performed by basidiomycete fungi, which often form large mycelia with a well-developed capacity to reallocate resources spatially-an advantageous trait in heterogeneous environments. In axenic microcosm systems we tested whether fungi increase their biomass production by reallocating N between Pinus sylvestris (Scots pine) needles at different stages of decomposition. We estimated fungal biomass production by analysing the accumulation of the fungal cell wall compound chitin. Monospecific systems were compared with systems with interspecific interactions. We found that the fungi reallocated assimilated N and mycelial growth away from well-degraded litter towards fresh litter components. This redistribution was accompanied by reduced decomposition of older litter. Interconnection of substrates increased over-all fungal C use efficiency (i.e. the allocation of assimilated C to biomass rather than respiration), presumably by enabling fungal translocation of growth-limiting N to litter with higher C quality. Fungal connection between different substrates also restricted N-mineralization and production of dissolved organic N, suggesting that litter saprotrophs in boreal forest ecosystems primarily act to redistribute rather than release N. This spatial integration of different resource qualities was hindered by interspecific interactions, in which litters of contrasting quality were colonised by two different basidiomycete species. The experiments provide a detailed picture of how resource reallocation in two decomposer fungi leads to a more efficient utilisation of spatially separated resources under N-limitation. From an ecosystem point of view, such economic fungal behaviour could potentially contribute to organic matter accumulation in the litter layers of boreal forests.
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| 29. |
- Hedberg, Petter, et al.
(author)
-
Vegetation recovery after multiple-site experimental fen restorations
- 2012
-
In: Biological Conservation. - : Elsevier BV. - 0006-3207 .- 1873-2917. ; 147:1, s. 60-67
-
Journal article (peer-reviewed)abstract
- Large peatland areas have been drained for forestry and agricultural purposes, resulting in the decline of characteristic biodiversity. Two measures commonly suggested for restoring drained fens is ditch blocking and tree removal to raise the groundwater table and increase light availability, respectively. In 2002, we initiated factorial restoration experiments, including ditch blocking and tree removal, in three former rich fens that had been drained for forestry purposes. Species cover of vascular plants and bryophytes were monitored during 8 years in permanent plots along transects perpendicular to the ditch for all four treatment combinations. Both methods had positive and independent effects on the cover of wetland vegetation. Specifically, Sphagnum species and wetland bryophytes showed a persistent positive response to both clear cutting and rewetting. Wetland vascular plants and grasses showed a persistent positive response to clear cutting. Sedges and species number responded positively to both clear cutting and ditch blocking, but the response was partly transient, and for species richness the response was limited when restoration methods were applied separately. Rich fen indicators of vascular plants and bryophytes did not respond to any of the restoration treatments. This indicates that species introduction in combination with further habitat restorations may be necessary to re-establish the original rich fen flora. Nevertheless, we conclude that the combination of ditch blocking and clear cutting are effective measures to partly restore wetland vegetation on previously drained and forested fens, while peat subsidence along the ditch may restrict the success further away from ditches.
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| 30. |
- Mikusinska, Anna, et al.
(author)
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Quantifying landscape change during the last two centuries in Bialowieza Primeval Forest
- 2013
-
In: Applied Vegetation Science. - 1402-2001 .- 1654-109X. ; 16:2, s. 217-226
-
Journal article (peer-reviewed)abstract
- QuestionWhat changes in character and extent of land use have occurred during the last 200yr in the Biaowiea Primeval Forest (BPF)? Are the landscape transformations described from the multi-temporal analysis of historical maps coherent with vegetation changes expressed by the previous palynological analyses?LocationBiaowiea Primeval Forest, PolishBelarusian border. MethodsWe used five historical maps (from 1793 to 1936) and one digital land-use map (19992000) to quantify the landscape changes. Land-use types according to historical maps were digitized and georeferenced. The maps were then used for both comparing the extent of cover types in each time step and analysing the nature of change through transition matrices. The sequence of changes concerning the proportion of land-use types was then compared with classes of pollen, which were assumed to represent corresponding vegetation types. ResultsMost of the area (>70%) has been continuously covered with forest. In the period between 1793 and 1830, the forest declined, being the main donor to agricultural land and villages. In the 20th century, the trend was reversed. We found a significant correlation between the percentage of the main vegetation types derived from historical maps and the corresponding vegetation types, as indicated by pollen, with a mean time lag of 20yr. ConclusionThe BPF landscape has been quite stable throughout the last 200yr, mainly due to the high continuity of forest cover. The results obtained from landscape analysis based on maps are coherent with pollen data collected in the same area.
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| 31. |
- Rasmusson, Lina M., et al.
(author)
-
Sensitivity of photosynthesis to warming in two similar species of the aquatic angiosperm ruppia from tropical and temperate habitats
- 2021
-
In: Sustainability. - : MDPI AG. - 2071-1050. ; 13:16
-
Journal article (peer-reviewed)abstract
- Climate change-related events, such as marine heatwaves, are increasing seawater temperatures, thereby putting pressure on marine biota. The cosmopolitan distribution and significant contribution to marine primary production by the genus Ruppia makes them interesting organisms to study thermal tolerance and local adaptation. In this study, we investigated the photosynthetic responses in Ruppia to the predicted future warming in two contrasting bioregions, temperate Sweden and tropical Thailand. Through DNA barcoding, specimens were determined to Ruppia cirrhosa for Sweden and Ruppia maritima for Thailand. Photosynthetic responses were assessed using pulse amplitude-modulated fluorometry, firstly in short time incubations at 18, 23, 28, and 33◦ C in the Swedish set-up and 28, 33, 38, and 43◦ C in the Thai set-up. Subsequent experiments were conducted to compare the short time effects to longer, five-day incubations in 28◦ C for Swedish plants and 40◦ C for Thai plants. Swedish R. cirrhosa displayed minor response, while Thai R. maritima was more sensitive to both direct and prolonged temperature stress with a drastic decrease in the photosynthetic parameters leading to mortality. The results indicate that in predicted warming scenarios, Swedish R. cirrhosa may sustain an efficient photosynthesis and potentially outcompete more heat-sensitive species. However, populations of the similar R. maritima in tropical environments may suffer a decline as their productivity will be highly reduced.
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| 32. |
- Ryberg, Martin, 1976, et al.
(author)
-
An evolutionary perspective on morphology and ecological characters in the mushroom family Inocybaceae (Agaricomycotina, Fungi)
- 2010
-
In: Molecular Phylogenetics and Evolution. - 1055-7903. ; 55:2, s. 431-442
-
Journal article (peer-reviewed)abstract
- Inocybaceae is one of the larger families among the gilled mushrooms (Agaricales) but their morphologybased taxonomy is still not fully settled considering molecular-based phylogenetic insights. Here we investigate the evolution of five morphological and four ecological characters using ancestral state reconstruction methods. All the morphological characters are correlated with the phylogeny, but we find spore shape and presence of cortina, to have the greatest taxonomic potential, as they are the most evolutionarily conserved. None of the five characters have, however, evolved in a way that easily delimits inclusive monophyletic groups and the section level taxonomy needs revision. Host preference, preference for calcareous soil, and soil nutritional status preference are shown to be reflective of the evolutionary history of the species at the scale investigated here while soil moisture preference is not. The states of three of the four ecological characters can therefore be predicted in a phylogenetic framework for species where they are unknown.
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| 33. |
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| 34. |
- Larsson, Ellen, 1961, et al.
(author)
-
Lyophyllum shimeji, a species associated with lichen pine forest in northern Fennoscandia
- 2011
-
In: Mycoscience. ; 52:5, s. 289-295
-
Journal article (peer-reviewed)abstract
- Phylogenetic relationships of Lyophyllum section Difformia were inferred using internal transcribed spacer (ITS) and large sub-unit (LSU) sequence data of specimens from Fennoscandia and Japan. Sequence analyses show that the delicacy mushroom Lyophyllum shimeji, hitherto only known from East Asia, occurs in Fennoscandia and that it is confined to Scots pine forests on lichen-clad sandy soil. Also, Lyophyllum decastes and L. fumosum, two species described from Europe, have a wide distribution and are represented in Japan. Within both these species sequence variation indicates that more taxa should be recognized. The observed phylogenetic differences correlate strongly with habitat, conifer or deciduous forest, but also to some extent with geographic origin. The identity of the species Lyophyllum loricatum remains unclear and further sequences from specimens fitting the original description are needed to resolve its taxonomic status. The phylogenetic results suggest that ecology is an important character when discriminating between species in Lyophyllum section Difformia.
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| 35. |
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| 36. |
- Ahrné, Karin, et al.
(author)
-
Tillstånd och trender för arter och deras livsmiljöer – rödlistade arter i Sverige 2015
- 2015
-
Reports (other academic/artistic)abstract
- 2015 års upplaga av den svenska rödlistan är den fjärde i ordningen. Den är baserad på IUCN:s rödlistningskriterier och revideras vart femte år. I rödlistan bedöms risken som enskilda arter av djur, växter och svampar löper att försvinna från Sverige. Bedömningen utförs av ArtDatabankens medarbetare i samverkan med över 100 externa experter, indelade i 14 expertkommittéer för olika organismgrupper. Under arbetet med 2015 års rödlista har tillstånd och trender bedömts för 21 600 arter och 1 318 lägre taxa (apomiktiska arter, underarter och varieteter), sammanlagt ca 22 900 taxa. Av de bedömda arterna klassificerades 2 029 som hotade (kategorierna CR, EN och VU) och 4 273 som rödlistade (inkluderar även kategorierna NT, RE och DD). Förhållandet mellan antalet rödlistade och antalet bedömda arter ar 19,8 %, vilket är ungefär samma värde som 2010 och 2005. I denna rapport jämförs antalet och andelen rödlistade arter mellan olika organismgrupper, biotoper, substrat och påverkansfaktorer. Texten ar indelad i en allmän del och åtta kapitel inriktade på olika landskapstyper. Landskapstyperna utgör en grov indelning av landets miljöer enligt följande kategorier: Skog, Jordbrukslandskap, Urbana miljöer, Fjäll, Våtmarker, Sötvatten, Havsstränder och Havsmiljöer. Skogen och jordbrukslandskapet är de artrikaste landskapstyperna med 1 800 respektive 1 400 arter som har en stark anknytning dit, och ytterligare flera hundra arter som förekommer där mer sporadiskt. De faktorer som påverkar flest rödlistade arter i Sverige är skogsavverkning och igenväxning, som båda utgör ett hot mot vardera ca 30 % av de rödlistade arterna. Avverkning minskar arealen av skog där naturliga strukturer och naturlig dynamik upprätthålls, och den orsakar därmed förlust av livsmiljöer. Igenväxning orsakas av ett antal faktorer, bland annat upphörande hävd (bete och slåtter), gödsling, trädplantering och brist på naturliga störningsregimer som t.ex. regelbundna översvämningar kring vattendrag och sjöar. Andra viktiga påverkansfaktorer är fiske, torrläggning av våtmarker, tillbakagång hos värdarter (främst alm och ask som drabbats av invasiva svampsjukdomar), klimatförändringar och konkurrens från invasiva arter. IUCN:s rödlisteindex beräknas för ett urval av de bedömda organismgrupperna. Rödlisteindex visar att skillnaderna mellan rödlistorna från 2000, 2005, 2010 och 2015 är små. Ett par undantag finns dock. Groddjur och stora däggdjur har fått en något förbättrad situation sedan 2000. Totalt förefaller det ändå som att trycket mot Sveriges artstock har förblivit relativt konstant under de senaste 15 åren.
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| 37. |
- Bjelke, Ulf, et al.
(author)
-
Rödlistade arter och naturvård i sand- och grustäkter
- 2012
-
Reports (other academic/artistic)abstract
- Naturligt störningspräglade sandmarker hyser en artrik och konkurrenskänslig flora och fauna. Sådana livsmiljöer har minskat drastiskt under 1900-talet. Under samma period ökade antalet sand- och grustäkter. Trots att täkterna ofta innebär stora ingrepp i naturen kan de utgöra viktiga ersättningshabitat för arter knutna till sandiga miljöer. Sedan några decennier så minskar även sand- och grustäkter starkt, beroende på att samhället vill bevara naturliga sand- och grusresurser. Produktionen har medvetet flyttats till bergkrossanläggningar och det ges idag mycket få tillstånd för utökad verksamhet eller nya sandtäkter. Från fler än 5 000 aktiva täkter på 1990-talet har antalet sjunkit till färre än 1 000. Täkter som avslutas har ofta föreskrifter om att planas ut och övertäckas vilket gör att deras naturvärden spolieras. Drygt 300 rödlistade arter har gynnats av sandtäkter när ursprungshabitaten minskat. Steklar och skalbaggar utgör de största grupperna med närmare två tredjedelar av arterna. Södra Sverige hyser störst rikedom av dessa arter men såväl täkter som arternas mer naturliga miljöer är bristfälligt undersökta, särskilt i glest befolkade delar av landet. För att bevara dessa täktlevande arter krävs att naturvården arbetar för att förhindra att avslutade täkter planas ut eller täcks över. Det är av stor betydelse att naturvårdande myndigheter ges tillräckliga styrmedel och ekonomiska resurser att arbeta med täkter. Genom enkla åtgärder kan de skapade livsmiljöerna i täkter bevaras till en låg kostnad jämfört med andra alternativa biotopvårdande åtgärder. Rapporten belyser artsamhällena som kan finnas i täkter samt viktiga strategier och åtgärder för naturvård i dessa miljöer. Rapporten har finansierats av Naturvårdsverket och av SLU:s medel för fortlöpande miljöanalys.
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| 38. |
- Blicharska, Malgorzata, et al.
(author)
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Old Trees: Cultural Value
- 2013
-
In: Science. - : American Association for the Advancement of Science (AAAS). - 0036-8075 .- 1095-9203. ; 339, s. 904-
-
Other publication (other academic/artistic)
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| 39. |
- Gärdenfors, Ulf
(author)
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Barometer of Life: National Red Lists
- 2010
-
In: Science. - : American Association for the Advancement of Science (AAAS). - 0036-8075 .- 1095-9203. ; 329, s. 140-
-
Other publication (peer-reviewed)
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| 40. |
- Gärdenfors, Ulf
(author)
-
Inledning. Introduction
- 2010
-
In: Rödlistade arter i Sverige 2010 – The 2010 Red List of Swedish Species.. - 9789188506351 ; , s. 15-18
-
Book chapter (other academic/artistic)
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| 41. |
- Gärdenfors, Ulf
(author)
-
Resultat. Results
- 2010
-
In: Rödlistade arter i Sverige 2010 – The 2010 Red List of Swedish Species. - 9789188506351 ; , s. 53-83
-
Book chapter (other academic/artistic)
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| 42. |
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| 43. |
- Gärdenfors, Ulf
(author)
-
The SAFE index is not safe!
- 2011
-
In: Frontiers in Ecology and the Environment. - 1540-9295 .- 1540-9309. ; 9, s. 485-486
-
Other publication (peer-reviewed)
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| 44. |
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| 45. |
- Ohlauson, Cecilia, et al.
(author)
-
Short-term effects of medetomidine on photosynthesis and protein synthesis in periphyton, epipsammon and plankton communities in relation to predicted environmental concentrations
- 2012
-
In: Biofouling. - : Informa UK Limited. - 0892-7014 .- 1029-2454. ; 28:5, s. 491-499
-
Journal article (peer-reviewed)abstract
- Medetomidine is a new antifouling substance, highly effective against barnacles. As part of a thorough ecotoxicological evaluation of medetomidine, its short-term effects on algal and bacterial communities were investigated and environmental concentrations were predicted with the MAMPEC model. Photosynthesis and bacterial protein synthesis for three marine communities, viz. periphyton, epipsammon and plankton were used as effect indicators, and compared with the predicted environmental concentrations (PECs). The plankton community showed a significant decrease in photosynthetic activity of 16% at 2 mg l(-1) of medetomidine, which was the only significant effect observed. PECs were estimated for a harbor, shipping lane and marina environment using three different model scenarios (MAMPEC default, Baltic and OECD scenarios). The highest PEC of 57 ng l(-1), generated for a marina with the Baltic scenario, was at least 10,000-fold lower than the concentration that significantly decreased photosynthetic activity. It is concluded that medetomidine does not cause any acute toxic effects on bacterial protein synthesis and only small acute effects on photosynthesis at high concentrations in marine microbial communities. It is also concluded that the hazard from medetomidine on these processes is low since the effect levels are much lower than the highest PEC.
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| 46. |
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| 47. |
- Sundberg, Sebastian, et al.
(author)
-
Havsstränder
- 2015
-
In: Tillstånd och trender för arter och deras livsmiljöer - rödlistade arter i Sverige 2015. - 9789187853135 ; :17, s. 51-56
-
Book chapter (other academic/artistic)abstract
- Sveriges mångformiga kust - med sand-, grus- och klippstränder, dyner och strandängar - hyser drygt 270 rödlistade arter för vilka havsstränderna är viktiga livsmiljöer. Här ingår många arter av fåglar, kärlväxter, spindeldjur, skalbaggar, fjärilar och groddjur. Havsstrandängar och sandiga miljöer är särskilt artrika. Havsstrandsarterna hotas främst av igenväxning, exploatering, mänsklig störning av häckningsplatser och livsmiljöer samt nedskräpning. De viktigaste åtgärderna är att återskapa blottade sandstränder och dyner, att säkerställa en välanpassad hävd av strandängar samt att minska föroreningar och marin nedskräpning.
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| 48. |
- Sundberg, Sebastian
(author)
-
Vad är rödlistan och hur bedöms växter och svampar?
- 2015
-
In: Svensk Botanisk Tidskrift. - 0039-646X. ; 109, s. 208-218
-
Journal article (other academic/artistic)abstract
- In April 2015, the Swedish Species Information Centre launched the fourth Swedish Red List according to the criteria and categories of IUCN, covering plants, fungi, invertebrates and vertebrates. A total of 4 274 species are now nationally red listed. Here, the criteria and categories are presented, and also how the assessments are done. Emphasis is put on how to calculate more realistic population changes when data is in the form of occupied grid squares (e.g. 5 × 5 km) in repeated surveys. This includes 1) correction for errors caused by the grid resolution, where errors are most marked for abundant species and those with a clumped distribution, 2) correction for efforts between surveys, and 3) how to calculate the most realistic decline, within ten years or three generations, given a species' estimated generation time.
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| 49. |
- Sundberg, Sebastian, et al.
(author)
-
Våtmarker
- 2015
-
In: Tillstånd och trender för arter och deras livsmiljöer - rödlistade arter i Sverige 2015. - 9789187853135 ; :17, s. 41-45
-
Book chapter (other academic/artistic)abstract
- Våtmarker, bl.a. myrar och sötvattensstränder, hyser totalt drygt 800 rödlistade arter, och för nästan 470 av dessa är våtmarkerna särskilt viktiga livsmiljöer. De flesta artgrupper har representanter här, men kärlväxter, lavar, tvåvingar och skalbaggar är särskilt artrika. Även mossor, fjärilar, fåglar och landmollusker är väl representerade. Rikkärr och sötvattensstränder är de artrikaste våtmarksmiljöerna. De rödlistade våtmarksarterna hotas främst av igenväxning, dikning, vattenreglering och eutrofiering. Restaurering, fortsatt och utökad hävd samt nyskapande av våtmarker är viktiga åtgärder, liksom återgång till naturlig vattenföring och vattenståndsdynamik i strandnära miljöer.
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| 50. |
- Vickers, Kim, et al.
(author)
-
Predicting island beetle faunas by their climate ranges : the tabula rasa/refugia theory in the North Atlantic
- 2015
-
In: Journal of Biogeography. - : Wiley-Blackwell. - 0305-0270 .- 1365-2699. ; 42:11, s. 2031-2048
-
Journal article (peer-reviewed)abstract
- Aim: This paper addresses two opposing theories put forward for the origins of the beetle fauna of the North Atlantic islands. The first is that the biota of the isolated oceanic islands of the Faroes, Iceland and Greenland immigrated across a Palaeogene–Neogene land bridge from Europe, and survived Pleistocene glaciations in ameliorated refugia. The second argues for a tabula rasa in which the biota of the islands was exterminated during glaciations and is Holocene in origin. The crux of these theories lies in the ability of the flora and fauna to survive in a range of environmental extremes. This paper sets out to assess the viability of the refugia hypothesis using the climatic tolerances of one aspect of the biota: the beetle fauna. Location: The paper focuses on Iceland, the Faroe Islands and Greenland. Methods: The known temperature requirements of the recorded beetle faunas of the North Atlantic islands were compared with published proxy climate reconstructions for successive climate periods since the severing of a North Atlantic land bridge. We used the MCR (mutual climatic range) method available in the open access BugsCEP database software. Results: We show that most of the MCR faunas of the North Atlantic islands could not have survived in situ since the Palaeogene–Neogene, and are likely to have been exterminated by the Pleistocene glaciations. Main conclusions: The discrepancy between the climatic tolerances of the North Atlantic beetle fauna and the estimated climatic regimes since the severing of a land bridge strongly support the tabula rasa theory and suggests that the North Atlantic coleopteran fauna is Holocene in origin.
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