| 1. |
- Johnsson, Anna-Ida, et al.
(author)
-
Specific SCAR markers and multiplex real-time PCR for quantification of two Trichoderma biocontrol strains in environmental samples
- 2011
-
In: BioControl. - : Springer Science and Business Media LLC. - 1386-6141 .- 1573-8248. ; 56, s. 903-913
-
Journal article (peer-reviewed)abstract
- Several strains from the genus Trichoderma (Ascomycetes, Hypocreales) are commercially used as biocontrol agents, e.g. in formulations containing the two Trichoderma strains IMI206039 (Hypocrea parapilulifera B.S. Lu, Druzhinina & Samuels) and IMI206040 (T. atroviride P. Karst). To quantify the presence of the two isolates after application, we developed primers for SCAR markers (Sequence-Characterised Amplified Region). In order to quantify both fungal strains simultaneously, we also designed fluorophore-labelled probes distinguishing the two strains, to be used in combination with the SCAR primers. In incubations of two different soils, artificially inoculated and maintained under controlled conditions, the quantification through amplification with the SCAR markers in qPCR and through colony-forming units from plate counting correlated well. Further tests of the markers on samples taken from a golf green treated with a product containing both strains indicated that the two biocontrol strains did not establish, either on the golf green or in the surrounding area.
|
|
| 2. |
|
|
| 3. |
- Von Rosen, Dietrich
(author)
-
Non-negative estimation of variance components in heteroscedastic one-way random-effects ANOVA models
- 2010
-
In: Statistics. - : Informa UK Limited. - 0233-1888 .- 1029-4910. ; 44, s. 557-569
-
Journal article (peer-reviewed)abstract
- There is a considerable amount of literature dealing with inference about the parameters in a heteroscedastic one-way random-effects ANOVA model. In this paper, we primarily address the problem of improved quadratic estimation of the random-effect variance component. It turns out that such estimators with a smaller mean squared error compared with some standard unbiased quadratic estimators exist under quite general conditions. Improved estimators of the error variance components are also established.
|
|
| 4. |
- Klapwijk, Maartje, et al.
(author)
-
Capturing complexity : Forests, decision-making and climate change mitigation action
- 2018
-
In: Global Environmental Change. - : Elsevier. - 0959-3780 .- 1872-9495. ; 52, s. 238-247
-
Journal article (peer-reviewed)abstract
- Managed forests can play an important role in climate change mitigation due to their capacity to sequester carbon. However, it has proven difficult to harness their full potential for climate change mitigation. Managed forests are often referred to as socio-ecological systems as the human dimension is an integral part of the system. When attempting to change systems that are influenced by factors such as collective knowledge, social organization, understanding of the situation and values represented in society, initial intentions often shift due to the complexity of political, social and scientific interactions. Currently, the scientific literature is dispersed over the different factors related to the socio-ecological system. To examine the level of dispersion and to obtain a holistic view, we review climate change mitigation in the context of Swedish forest research. We introduce a heuristic framework to understand decision-making connected to climate change mitigation. We apply our framework to two themes which span different dimensions in the socio-ecological system: carbon accounting and bioenergy. A key finding in the literature was the perception that current uncertainties regarding the reliability of different methods of carbon accounting inhibits international agreement on the use of forests for climate change mitigation. This feeds into a strategic obstacle affecting the willingness of individual countries to implement forest-related carbon emission reduction policies. Decisions on the utilization of forests for bioenergy are impeded by a lack of knowledge regarding the resultant biophysical and social consequences. This interacts negatively with the development of institutional incentives regarding the production of bioenergy using forest products. Normative disagreement about acceptable forest use further affects these scientific discussions and therefore is an over-arching influence on decision-making. With our framework, we capture this complexity and make obstacles to decision-making more transparent to enable their more effective resolution. We have identified the main research areas concerned with the use of managed forest in climate change mitigation and the obstacles that are connected to decision making.
|
|
| 5. |
-
Unraveling the logics of landscape
- 2014
-
Editorial collection (other academic/artistic)abstract
- Despite conceptual oscillations through times, the concept of landscape remains highly subjective, whereupon unraveling its 'logics' opens up to a plurality of interpretations. Accordingly, by focusing on the interconnections present in the non-haphazard production of landscape, this publication elaborates on how the rural landscape is valued, monitored, changed, harbored, used and misused, be it through actions, representations or metaphors. This book covers a broad range of topics, with contributions from scholars from more than 30 countries.
|
|
| 6. |
- Jayasiri, Subashini C., et al.
(author)
-
The Faces of Fungi database: fungal names linked with morphology, phylogeny and human impacts
- 2015
-
In: Fungal diversity. - : Springer Science and Business Media LLC. - 1560-2745 .- 1878-9129. ; 74:1, s. 3-18
-
Journal article (peer-reviewed)abstract
- Taxonomic names are key links between various databases that store information on different organisms. Several global fungal nomenclural and taxonomic databases (notably Index Fungorum, Species Fungorum and MycoBank) can be sourced to find taxonomic details about fungi, while DNA sequence data can be sourced from NCBI, EBI and UNITE databases. Although the sequence data may be linked to a name, the quality of the metadata is variable and generally there is no corresponding link to images, descriptions or herbarium material. There is generally no way to establish the accuracy of the names in these genomic databases, other than whether the submission is from a reputable source. To tackle this problem, a new database (FacesofFungi), accessible at www.facesoffungi.org (FoF) has been established. This fungal database allows deposition of taxonomic data, phenotypic details and other useful data, which will enhance our current taxonomic understanding and ultimately enable mycologists to gain better and updated insights into the current fungal classification system. In addition, the database will also allow access to comprehensive metadata including descriptions of voucher and type specimens. This database is user-friendly, providing links and easy access between taxonomic ranks, with the classification system based primarily on molecular data (from the literature and via updated web-based phylogenetic trees), and to a lesser extent on morphological data when molecular data are unavailable. In FoF species are not only linked to the closest phylogenetic representatives, but also relevant data is provided, wherever available, on various applied aspects, such as ecological, industrial, quarantine and chemical uses. The data include the three main fungal groups (Ascomycota, Basidiomycota, Basal fungi) and fungus-like organisms. The FoF webpage is an output funded by the Mushroom Research Foundation which is an NGO with seven directors with mycological expertise. The webpage has 76 curators, and with the help of these specialists, FoF will provide an updated natural classification of the fungi, with illustrated accounts of species linked to molecular data. The present paper introduces the FoF database to the scientific community and briefly reviews some of the problems associated with classification and identification of the main fungal groups. The structure and use of the database is then explained. We would like to invite all mycologists to contribute to these web pages.
|
|
| 7. |
|
|
| 8. |
- Tedersoo, Leho, et al.
(author)
-
Novel soil-inhabiting clades fill gaps in the fungal tree of life
- 2017
-
In: Microbiome. - : Springer Science and Business Media LLC. - 2049-2618. ; 5
-
Journal article (peer-reviewed)abstract
- Background - Fungi are a diverse eukaryotic group of degraders, pathogens, and symbionts, with many lineages known only from DNA sequences in soil, sediments, air, and water. Results - We provide rough phylogenetic placement and principal niche analysis for >40 previously unrecognized fungal groups at the order and class level from global soil samples based on combined 18S (nSSU) and 28S (nLSU) rRNA gene sequences. Especially, Rozellomycota (Cryptomycota), Zygomycota s.lat, Ascomycota, and Basidiomycota are rich in novel fungal lineages, most of which exhibit distinct preferences for climate and soil pH. Conclusions - This study uncovers the great phylogenetic richness of previously unrecognized order- to phylum-level fungal lineages. Most of these rare groups are distributed in different ecosystems of the world but exhibit distinct ecological preferences for climate or soil pH. Across the fungal kingdom, tropical and non-tropical habitats are equally likely to harbor novel groups. We advocate that a combination of traditional and high-throughput sequencing methods enable efficient recovery and phylogenetic placement of such unknown taxonomic groups.
|
|
| 9. |
- Pendrill, Florence, 1983
(author)
-
Felling Forests from Afar: Quantifying Deforestation Driven by Agricultural Expansion and International Trade
- 2019
-
Licentiate thesis (other academic/artistic)abstract
- Deforestation is a major source of human-caused greenhouse gas emissions and the largest threat to terrestrial biodiversity. Most forest loss is due to the expansion of agricultural land use increasingly driven by international demand for food, fuel and fibre. However, there is still limited understanding of the extent to which different agricultural commodities are contributing to deforestation. It has therefore also been difficult to evaluate the role of international trade in driving deforestation. This dissertation aims at quantifying the agricultural drivers of tropical deforestation (Papers I and II) and the associated carbon emissions (Paper III). It further assesses the role of international trade, by following the agricultural commodities with embodied deforestation through international supply chains using trade models (Papers II and III). The results show that a few commodity types, primarily cattle meat and oilseed products, account for a large part of tropical deforestation. Much (26–39%) of the embodied deforestation and concomitant emissions were found to be associated with international demand (from products and services). Looking closer at the countries that import embodied deforestation, Paper II finds that many countries that are increasing their forest cover at home, import products associated with deforestation elsewhere, thereby offsetting about a third of their forest gains. Paper III finds that imports of embodied deforestation emissions for many developed countries are similar in size to their national agricultural emissions amounting, e.g., for the EU, to around 15% of the carbon footprint of an average diet. Put together, the results add to the evidence that combating deforestation can benefit from complementing domestic policies with measures that target international demand. The results also indicate that tackling deforestation and its associated impacts at the global level is probably even more challenging than at the national level, although international trade can also provide efficiency gains by optimising land use globally.
|
|
| 10. |
- Liljenström, Hans, et al.
(author)
-
Scoping Report on Socio-Economic and Land Use Dynamics in the Stockholm-Mälar Region
- 2014
-
Reports (other academic/artistic)abstract
- This scoping report for the COMPLEX work package 4 (WP4) on Socio-Economic and Land Use Dynamics in the Stockholm-Mälar Region has several objectives. The first is to present and outline the state-of-the-art, including a literature review, with regard to complex pathways to a low carbon society, with special relevance to the Stockholm-Mälar region. It will do so in a larger context of complex socio-natural systems, with an emphasis on a green economy, bioen-ergy and land use, as well as on societal transformation and behavioural change. Another objec-tive is to inform primarily our partners in COMPLEX, but also others who might be interested, including stakeholders in our study region. Perhaps the most important objective with this re-port is to provide a basis for the collaborative work within our work package, and with our col-leagues elsewhere. In this second revised version of the report, we have extended some parts, and shortened others, depending on suggestions and interesting new information. A part of this new information has come from a stakeholder workshop held in Sigtuna in early 2014, which to a great extent could contribute to a more elaborate analysis of stakeholder and policy maker positions. In addition, there is now a more extensive description of relevant land use modelling. The illustrations included in this report are extracted from scientific articles and other material that we are referring to. Their origin is explicitly cited but no copyright authorization has been requested, while this report is intended primarily for internal spread and use within the COM-PLEX consortium and its networks.
|
|
| 11. |
- Abarenkov, Kessy, et al.
(author)
-
Protax-fungi: A web-based tool for probabilistic taxonomic placement of fungal internal transcribed spacer sequences
- 2018
-
In: New Phytologist. - : Wiley. - 0028-646X .- 1469-8137. ; 220:2, s. 517-525
-
Journal article (peer-reviewed)abstract
- © 2018 New Phytologist Trust. Incompleteness of reference sequence databases and unresolved taxonomic relationships complicates taxonomic placement of fungal sequences. We developed Protax-fungi, a general tool for taxonomic placement of fungal internal transcribed spacer (ITS) sequences, and implemented it into the PlutoF platform of the UNITE database for molecular identification of fungi. With empirical data on root- and wood-associated fungi, Protax-fungi reliably identified (with at least 90% identification probability) the majority of sequences to the order level but only around one-fifth of them to the species level, reflecting the current limited coverage of the databases. Protax-fungi outperformed the Sintax and Rdb classifiers in terms of increased accuracy and decreased calibration error when applied to data on mock communities representing species groups with poor sequence database coverage. We applied Protax-fungi to examine the internal consistencies of the Index Fungorum and UNITE databases. This revealed inconsistencies in the taxonomy database as well as mislabelling and sequence quality problems in the reference database. The according improvements were implemented in both databases. Protax-fungi provides a robust tool for performing statistically reliable identifications of fungi in spite of the incompleteness of extant reference sequence databases and unresolved taxonomic relationships.
|
|
| 12. |
- Skovsgaard, Jens Peter
(author)
-
Bog om tarmvridrøn
- 2013
-
In: Skoven. - 0106-8539. ; 45, s. 551-551
-
Other publication (other academic/artistic)abstract
- Book review N. Mayer & R.T. Klumpp (ed.) 2013: Elsbeere in Österreich – Monographie. Verein zur Erhaltung, Pflege und Vermarktung der Elsbeere - Genussregion Wiesenwienerwald Elsbeere, Michelbach.
|
|
| 13. |
- Pendrill, Florence, 1983
(author)
-
Where have all the forests gone? Quantifying pantropical deforestation drivers
- 2022
-
Doctoral thesis (other academic/artistic)abstract
- Deforestation across the tropics continues to be a major source of greenhouse gas emissions and the largest threat to biodiversity on land. With strengthened commitments to reduce deforestation from countries and companies alike, it is crucial that renewed investments for reducing deforestation be guided by a sound understanding of what drives deforestation. This thesis gives a comprehensive picture of the amount of deforestation and concomitant carbon emissions driven by the expansion of agricultural commodities across the tropics and its link to international trade. The included papers show that pasture and a handful of crops drive a large share of the deforestation resulting in the expansion of productive agriculture. The main demand for these commodities is domestic consumption; even so, imports of food commodities associated with deforestation can still constitute a large part of the consumer countries’ carbon emissions due to consumption (e.g., in the EU). This thesis contributes empirical evidence relating to forest transition theories by showing that many countries with increasing forest cover tend to import products associated with deforestation elsewhere, thereby offsetting around one-third of their forest gains. The thesis also introduces a conceptual distinction between two categories of agriculture-driven deforestation, based on whether it results in productive agricultural land or not. Though almost all deforestation is agriculture-driven, one-third to one-half of agriculture-driven deforestation occurs without the expansion of productive agricultural land. Instead, it may be due to several potential mechanisms, such as land speculation, tenure issues, or fires. Put together, these results indicate that it is crucial that policies to curb deforestation go beyond focusing only on trade in specific commodities, to help foster concerted action on rural development, territorial governance, and land-use planning. This thesis also highlights key evidence gaps on the links between deforestation and agriculture: (i) the attribution of deforestation to specific commodities currently often relies on coarse or outdated data, (ii) there is a need for improved data on deforestation trends, and (iii) our understanding of deforestation drivers is systematically poorer for dry forests and Africa.
|
|
| 14. |
- Messing, Ingmar
(author)
-
Land and land use : Natural preconditions
- 2011
-
In: Agriculture and Forestry in Sweden since 1900- a cartographic description. - 9789187760617 ; , s. 14-22
-
Book chapter (other academic/artistic)
|
|
| 15. |
- Messing, Ingmar
(author)
-
Marken i Sverige : Naturliga förutsättningar
- 2011
-
In: Sveriges nationalatlas. Jordbruk och skogsbruk i Sverige sedan år 1900: en kartografisk beskrivning. - 9789187760594 ; , s. 14-22
-
Book chapter (other academic/artistic)
|
|
| 16. |
- Tunon, Håkan, et al.
(author)
-
Kulturarv och hållbar utveckling
- 2010
-
In: Bebyggelsehistorisk tidskrift. - : Föreningen Bebyggelsehistorisk tidskrift. - 0349-2834 .- 2002-3812. ; , s. 99–106-
-
Journal article (other academic/artistic)
|
|
| 17. |
- Ritter, Camila, et al.
(author)
-
Biodiversity assessments in the 21st century: The potential of insect traps to complement environmental samples for estimating eukaryotic and prokaryotic diversity using high-throughput DNA metabarcoding.
- 2019
-
In: Genome. - : Canadian Science Publishing. - 1480-3321 .- 0831-2796. ; 62:3, s. 147-159
-
Journal article (peer-reviewed)abstract
- The rapid loss of biodiversity, coupled with difficulties in species identification, call for innovative approaches to assess biodiversity. Insects make up a substantial proportion of extant diversity and play fundamental roles in any given ecosystem. To complement morphological species identification, new techniques such as metabarcoding make it possible to quantify insect diversity and insect-ecosystem interactions through DNA sequencing. Here we examine the potential of bulk insect samples (i.e., containing many non-sorted specimens) to assess prokaryote and eukaryote biodiversity and to complement the taxonomic coverage of soil samples. We sampled 25 sites on three continents and in various ecosystems, collecting insects with Slam-traps (Brazil) and Malaise-traps (South Africa and Sweden). We then compared our diversity estimates with the results obtained with biodiversity data from soil samples from the same localities. We found a largely different taxonomic composition between the soil and insect samples, testifying to the potential of bulk insect samples to complement soil samples. Finally, we found that non-destructive DNA extraction protocols, which preserve insect specimens for morphological studies, constitute a promising choice for cost-effective biodiversity assessments. We propose that the sampling and sequencing of insect samples should become a standard complement for biodiversity studies based on environmental DNA.
|
|
| 18. |
- Crous, P. W., et al.
(author)
-
Fusarium : more than a node or a foot-shaped basal cell
- 2021
-
In: Studies in mycology. - : CENTRAALBUREAU SCHIMMELCULTURE. - 0166-0616 .- 1872-9797. ; :98
-
Journal article (peer-reviewed)abstract
- Recent publications have argued that there are potentially serious consequences for researchers in recognising distinct genera in the terminal fusarioid clade of the family Nectriaceae. Thus, an alternate hypothesis, namely a very broad concept of the genus Fusarium was proposed. In doing so, however, a significant body of data that supports distinct genera in Nectriaceae based on morphology, biology, and phylogeny is disregarded. A DNA phylogeny based on 19 orthologous protein-coding genes was presented to support a very broad concept of Fusarium at the F1 node in Nectriaceae. Here, we demonstrate that re-analyses of this dataset show that all 19 genes support the F3 node that represents Fusarium sensu stricto as defined by F. sambucinum (sexual morph synonym Gibberella pulicaris). The backbone of the phylogeny is resolved by the concatenated alignment, but only six of the 19 genes fully support the F1 node, representing the broad circumscription of Fusarium. Furthermore, a re-analysis of the concatenated dataset revealed alternate topologies in different phylogenetic algorithms, highlighting the deep divergence and unresolved placement of various Nectriaceae lineages proposed as members of Fusarium. Species of Fusarium s. str. are characterised by Gibberella sexual morphs, asexual morphs with thin- or thick-walled macroconidia that have variously shaped apical and basal cells, and trichothecene mycotoxin production, which separates them from other fusarioid genera. Here we show that the Wollenweber concept of Fusarium presently accounts for 20 segregate genera with clear-cut synapomorphic traits, and that fusarioid macroconidia represent a character that has been gained or lost multiple times throughout Nectriaceae. Thus, the very broad circumscription of Fusarium is blurry and without apparent synapomorphies, and does not include all genera with fusarium-like macroconidia, which are spread throughout Nectriaceae (e.g., Cosmosporella, Macroconia, Microcera). In this study four new genera are introduced, along with 18 new species and 16 new combinations. These names convey information about relationships, morphology, and ecological preference that would otherwise be lost in a broader definition of Fusarium. To assist users to correctly identify fusarioid genera and species, we introduce a new online identification database, Fusarioid-ID, accessible at www.fusarium.org. The database comprises partial sequences from multiple genes commonly used to identify fusarioid taxa (act1, CaM, his3, rpb1, rpb2, tef1, tub2, ITS, and LSU). In this paper, we also present a nomenclator of names that have been introduced in Fusarium up to January 2021 as well as their current status, types, and diagnostic DNA barcode data. In this study, researchers from 46 countries, representing taxonomists, plant pathologists, medical mycologists, quarantine officials, regulatory agencies, and students, strongly support the application and use of a more precisely delimited Fusarium (= Gibberella) concept to accommodate taxa from the robust monophyletic node F3 on the basis of a well-defined and unique combination of morphological and biochemical features. This F3 node includes, among others, species of the F. fujikuroi, F. incarnatum-equiseti, F. oxysporum, and F. sambucinum species complexes, but not species of Bisifusarium [F. dimerum species complex (SC)], Cyanonectria (F. buxicola SC), Geejayessia (F. staphyleae SC), Neocosmospora (F. solani SC) or Rectifusarium (F. ventricosum SC). The present study represents the first step to generating a new online monograph of Fusarium and allied fusarioid genera (www.fusarium.org).
|
|
| 19. |
- Ahrné, Karin, et al.
(author)
-
Tillstånd och trender för arter och deras livsmiljöer – rödlistade arter i Sverige 2015
- 2015
-
Reports (other academic/artistic)abstract
- 2015 års upplaga av den svenska rödlistan är den fjärde i ordningen. Den är baserad på IUCN:s rödlistningskriterier och revideras vart femte år. I rödlistan bedöms risken som enskilda arter av djur, växter och svampar löper att försvinna från Sverige. Bedömningen utförs av ArtDatabankens medarbetare i samverkan med över 100 externa experter, indelade i 14 expertkommittéer för olika organismgrupper. Under arbetet med 2015 års rödlista har tillstånd och trender bedömts för 21 600 arter och 1 318 lägre taxa (apomiktiska arter, underarter och varieteter), sammanlagt ca 22 900 taxa. Av de bedömda arterna klassificerades 2 029 som hotade (kategorierna CR, EN och VU) och 4 273 som rödlistade (inkluderar även kategorierna NT, RE och DD). Förhållandet mellan antalet rödlistade och antalet bedömda arter ar 19,8 %, vilket är ungefär samma värde som 2010 och 2005. I denna rapport jämförs antalet och andelen rödlistade arter mellan olika organismgrupper, biotoper, substrat och påverkansfaktorer. Texten ar indelad i en allmän del och åtta kapitel inriktade på olika landskapstyper. Landskapstyperna utgör en grov indelning av landets miljöer enligt följande kategorier: Skog, Jordbrukslandskap, Urbana miljöer, Fjäll, Våtmarker, Sötvatten, Havsstränder och Havsmiljöer. Skogen och jordbrukslandskapet är de artrikaste landskapstyperna med 1 800 respektive 1 400 arter som har en stark anknytning dit, och ytterligare flera hundra arter som förekommer där mer sporadiskt. De faktorer som påverkar flest rödlistade arter i Sverige är skogsavverkning och igenväxning, som båda utgör ett hot mot vardera ca 30 % av de rödlistade arterna. Avverkning minskar arealen av skog där naturliga strukturer och naturlig dynamik upprätthålls, och den orsakar därmed förlust av livsmiljöer. Igenväxning orsakas av ett antal faktorer, bland annat upphörande hävd (bete och slåtter), gödsling, trädplantering och brist på naturliga störningsregimer som t.ex. regelbundna översvämningar kring vattendrag och sjöar. Andra viktiga påverkansfaktorer är fiske, torrläggning av våtmarker, tillbakagång hos värdarter (främst alm och ask som drabbats av invasiva svampsjukdomar), klimatförändringar och konkurrens från invasiva arter. IUCN:s rödlisteindex beräknas för ett urval av de bedömda organismgrupperna. Rödlisteindex visar att skillnaderna mellan rödlistorna från 2000, 2005, 2010 och 2015 är små. Ett par undantag finns dock. Groddjur och stora däggdjur har fått en något förbättrad situation sedan 2000. Totalt förefaller det ändå som att trycket mot Sveriges artstock har förblivit relativt konstant under de senaste 15 åren.
|
|
| 20. |
|
|
| 21. |
- Hartmann, Martin, et al.
(author)
-
Significant and persistent impact of timber harvesting on soil microbial communities in Northern coniferous forests
- 2012
-
In: The ISME Journal. - : Springer Science and Business Media LLC. - 1751-7362 .- 1751-7370. ; 6:12, s. 2199-2218
-
Journal article (peer-reviewed)abstract
- Forest ecosystems have integral roles in climate stability, biodiversity and economic development. Soil stewardship is essential for sustainable forest management. Organic matter (OM) removal and soil compaction are key disturbances associated with forest harvesting, but their impacts on forest ecosystems are not well understood. Because microbiological processes regulate soil ecology and biogeochemistry, microbial community structure might serve as indicator of forest ecosystem status, revealing changes in nutrient and energy flow patterns before they have irreversible effects on long-term soil productivity. We applied massively parallel pyrosequencing of over 4.6 million ribosomal marker sequences to assess the impact of OM removal and soil compaction on bacterial and fungal communities in a field experiment replicated at six forest sites in British Columbia, Canada. More than a decade after harvesting, diversity and structure of soil bacterial and fungal communities remained significantly altered by harvesting disturbances, with individual taxonomic groups responding differentially to varied levels of the disturbances. Plant symbionts, like ectomycorrhizal fungi, and saprobic taxa, such as ascomycetes and actinomycetes, were among the most sensitive to harvesting disturbances. Given their significant ecological roles in forest development, the fate of these taxa might be critical for sustainability of forest ecosystems. Although abundant bacterial populations were ubiquitous, abundant fungal populations often revealed a patchy distribution, consistent with their higher sensitivity to the examined soil disturbances. These results establish a comprehensive inventory of bacterial and fungal community composition in northern coniferous forests and demonstrate the long-term response of their structure to key disturbances associated with forest harvesting.
|
|
| 22. |
- Mattsson, Eskil, 1981, et al.
(author)
-
Quantification of carbon stock and tree diversity of homegardens in a dry zone area of Moneragala District, Sri Lanka
- 2015
-
In: Agroforestry Systems. - : Springer Science and Business Media LLC. - 1572-9680 .- 0167-4366. ; 89:3, s. 435-445
-
Journal article (peer-reviewed)abstract
- Homegarden agroforestry systems are suggested to hold a large potential for climate change mitigation and adaptation. This is due to their multifunctional role in providing income, food and ecosystem services while decreasing pressure on natural forests and hence saving and storing carbon. In this paper, above-ground biomass carbon and tree species diversity of trees was quantified in homegardens around two villages in the dry south-eastern part of Moneragala district of Sri Lanka. A total of 45 dry zone homegardens were sampled on size, diameter at breast height, tree height and species diversity. Using allometric equations, we find a mean above-ground biomass stock of 13 mega grams of carbon per hectare (Mg C ha−1) with a large range among homegardens (1–56 Mg C ha−1, n = 45) due to a variation of tree diversity and composition between individual homegardens. Mean above-ground carbon stock per unit area was higher in small homegardens (0.2 ha, 26 Mg C ha−1, n = 11) and statistically different compared to medium (0.4–0.8 ha, 9 Mg C ha−1, n = 27) and large (1.0–1.2 ha, 8 Mg C ha−1, n = 7) homegardens. In total, 4,278 trees were sampled and 70 tree species identified and recorded. The Shannon Wiener index were used to evaluate diversity per homegarden and ranged from 0.76 to 3.01 with a mean value of 2.05 ± 0.07 indicating a medium evenly distributed diversity of sampled tree species. The results show a vast heterogeneity in terms of carbon stock and tree diversity within the less studied dry zone homegardens; results that contribute to more knowledge of their expansion potential as well as climate mitigation and adaptation potential. The results are also useful for whether homegardens should be considered to be included as an activity to enhance natural forest cover within Sri Lanka’s newly commenced UN-REDD National Programme.
|
|
| 23. |
- Nilsson, R. Henrik, 1976, et al.
(author)
-
Top 50 most wanted fungi
- 2016
-
In: MycoKeys. - : Pensoft Publishers. - 1314-4057 .- 1314-4049. ; 12, s. 29-40
-
Journal article (peer-reviewed)abstract
- Environmental sequencing regularly recovers fungi that cannot be classified to any meaningful taxonomic level beyond “Fungi”. There are several examples where evidence of such lineages has been sitting in public sequence databases for up to ten years before receiving scientific attention and formal recognition. In order to highlight these unidentified lineages for taxonomic scrutiny, a search function is presented that produces updated lists of approximately genus-level clusters of fungal ITS sequences that remain unidentified at the phylum, class, and order levels, respectively. The search function (https://unite.ut.ee/top50.php) is implemented in the UNITE database for molecular identification of fungi, such that the underlying sequences and fungal lineages are open to third-party annotation. We invite researchers to examine these enigmatic fungal lineages in the hope that their taxonomic resolution will not have to wait another ten years or more.
|
|
| 24. |
- Nilsson, R. Henrik, 1976
(author)
-
Unifying fungi
- 2015
-
In: Science & Technology. - 2049-2391 .- 2049-2405. ; :14, s. 204-206
-
Journal article (other academic/artistic)
|
|
| 25. |
- Thulin, Carl-Gustaf
(author)
-
Utsättning av arter : möjlighet för bevarandebiologin
- 2010
-
In: Biodiverse. - 1401-5064. ; 15, s. 8-9
-
Journal article (pop. science, debate, etc.)abstract
- Ett halvöppet, lövträdsdominerat landskap med betande hjortdjur, visenter, förvildad nötboskap och vildsvin, jagade av livskraftiga populationer av varg, björn och lo. Utopier och vilda fantasier? Kanske i delar, men något håller definitivt på att hända med bevarandet, återskapandet och skötseln av de europeiska vildmarkerna
|
|
| 26. |
- Vestin, Patrik, et al.
(author)
-
Impacts of stump harvesting on carbon dioxide, methane and nitrous oxide fluxes
- 2022
-
In: Iforest-Biogeosciences and Forestry. - : Italian Society of Sivilculture and Forest Ecology (SISEF). - 1971-7458. ; 15, s. 148-162
-
Journal article (peer-reviewed)abstract
- During 2010-2013, we investigated the effects of stump harvesting on greenide (N2O) with the flux-gradient technique at four experimental plots in a hemiboreal forest in Sweden. All plots were clear-cut and soil scarified and two of the plots were additionally stump harvested. The two clear-cut plots served as control plots. Due to differences in topography, we had one wetter and one drier plot of each treatment. All plots exhibited substantial emissions of GHGs and we noted significant effects of wetness on CO2, CH4 and N2O fluxes within treatments and significant effects of stump harvesting on CO2 and N2O fluxes at the dry plots. The CO2 emissions were lower at the dry stump harvested plot than at the dry control, but when estimated emissions from the removed stumps were added, total CO2 emissions were higher at the stump harvested plot, indicating a small enhancement of soil respiration. In addition, we noted significant emissions of N2O at this plot. At the wet plots, CO2 emissions were higher at the stump harvested plot, also suggesting a treatment effect but differences in wetness and vegetation cover at these plots make this effect more uncertain. At the wet plots, we noted sustained periods (weeks to months) of net N2O uptake. During the year with simultaneous measurements of the abovementioned GHGs, GHG budgets were 1.224??103 and 1.442??103 gm-2 of CO2-equivalents at the wet and dry stump harvested plots, respectively, and 1.070??103 and 1.696??103 gm-2 of CO2-equivalents at the wet and dry control plots, respectively. CO2 fluxes dominated GHG budgets at all plots but N2O contributed with 17% at the dry stump harvested plot. For the full period 2010-2013, total carbon (CO2+CH4) budgets were 4.301??103 and 4.114??103 g m-2 of CO2-eqvivalents at the wet and dry stump harvest plots, respectively and 4.107??103 and 5.274??103 gm-2 of CO2-equivalents at the wet and dry control plots, respectively. Our results support recent studies suggesting that stump harvesting does not result in substantial increase in CO2 emissions but uncertainties regarding GHG fluxes (especially N2O) remain and more long-term measurements are needed before robust conclusions can be drawn.
|
|
| 27. |
|
|
| 28. |
- Norman, Johan
(author)
-
Skogen – en plats för upplevelser
- 2011
-
In: Grön Entreprenör, Naturupplevelse och hälsa – forskningen visar vägen. - 9789157690364 ; , s. 62-75
-
Book chapter (pop. science, debate, etc.)
|
|
| 29. |
- Tedersoo, Leho, et al.
(author)
-
Standardizing metadata and taxonomic identification in metabarcoding studies
- 2015
-
In: GigaScience. - : Oxford University Press (OUP). - 2047-217X .- 2047-217X. ; 4
-
Journal article (peer-reviewed)abstract
- High-throughput sequencing-based metabarcoding studies produce vast amounts of ecological data, but a lack of consensus on standardization of metadata and how to refer to the species recovered severely hampers reanalysis and comparisons among studies. Here we propose an automated workflow covering data submission, compression, storage and public access to allow easy data retrieval and inter-study communication. Such standardized and readily accessible datasets facilitate data management, taxonomic comparisons and compilation of global metastudies.
|
|
| 30. |
- Abbas, Nadeem, 1980-, et al.
(author)
-
Smart Forest Observatories Network : A MAPE-K Architecture Based Approach for Detecting and Monitoring Forest Damage
- 2023
-
In: Proceedings of the Conference Digital solutions for detecting and monitoring forest damage.
-
Conference paper (other academic/artistic)abstract
- Forests are essential for life, providing various ecological, social, and economic benefits worldwide. However, one of the main challenges faced by the world is the forest damage caused by biotic and abiotic factors. In any case, the forest damages threaten the environment, biodiversity, and ecosystem. Climate change and anthropogenic activities, such as illegal logging and industrial waste, are among the principal elements contributing to forest damage. To achieve the United Nations' Sustainable Development Goals (SDGs) related to forests and climate change, detecting and analyzing forest damages, and taking appropriate measures to prevent or reduce the damages are essential. To that end, we envision establishing a Smart Forest Observatories (SFOs) network, as shown below, which can be either a local area or a wide area network involving remote forests. The basic idea is to use Monitor, Analyze, Plan, Execute, and Knowledge (MAPE-K) architecture from autonomic computing and self-adaptive software systems domain to design and develop the SFOs network. The SFOs are planned to collect, analyze, and share the collected data and analysis results using state-of-the-art methods. The principal objective of the SFOs network is to provide accurate and real-time data to policymakers and forest managers, enabling them to develop effective policies and management strategies for global forest conservation that help to achieve SDGs related to forests and climate change.
|
|
| 31. |
- Unterseher, Martin, et al.
(author)
-
Mycobiomes of sympatric Amorphophallus albispathus (Araceae) and Camellia sinensis (Theaceae) – a case study reveals clear tissue preferences and differences in diversity and composition
- 2018
-
In: Mycological Progress. - : Springer Science and Business Media LLC. - 1617-416X .- 1861-8952. ; 17:4, s. 489-500
-
Journal article (peer-reviewed)abstract
- Multiple biotic and abiotic parameters influence the dynamics of individual fungal species and entire communities. Major drivers for tropical plant endophytes are undoubtedly seasonality, local habitat conditions and biogeography. However, host specialization and tissue preferences also contribute to the structuring of endophytic mycobiomes. To elucidate such specializations and preferences, we sampled two commercially important, unrelated plant species, Amorphophallus albispathus and Camellia sinensis (tea plant) simultaneously at close proximity. The mycobiomes of different tissue types were assessed with high-throughput amplicon sequencing of the internal transcribed spacer DNA region. Both plants hosted different fungal communities and varied in α- and β-diversity, despite their neighboring occurrence. However, the fungal assemblages of Amorphophallus leaflets shared taxa with the mycobiomes of tea leaves, thereby suggesting common driving forces for leaf-inhabiting fungi irrespective of host plant identity. The mycobiome composition and diversity of tea leaves was clearly driven by leaf age. We suggest that the very youngest tea leaves are colonized by stochastic processes, while mycobiomes of old leaves are rather similar as the result of progressive succession. The biodiversity of fungi associated with A. albispathus was characterized by a large number of unclassified OTUs (at genus and species level) and by tissue-specific composition.This study is the first cultivation-independent high-throughput assessment of fungal biodiversity of an Amorphophallus species, and additionally expands the knowledge base on fungi associated with tea plants.
|
|
| 32. |
- Ode Sang, Åsa, et al.
(author)
-
Are path choices of people moving through urban green spaces explained by gender and age? Implications for planning and management
- 2020
-
In: Urban Forestry & Urban Greening. - : Elsevier BV. - 1618-8667 .- 1610-8167. ; 49
-
Journal article (peer-reviewed)abstract
- Neighbourhood green space is an important asset for the urban population, providing valuable ecosystem services such as supporting human health. Distance or access to urban green areas is well established as being important for the potential use of the area but how different demographic groups move within greenspace is still somewhat unknown. Previous studies have shown that there are gender as well as age differences in visual perception, audio experience and recreational activities as well as estimated well-being experienced from use of urban green space. Here we explored people's movement within their local green space in the city of Gothenburg, Sweden. The results showed that movement took place over large parts of the green spaces studied, not only along paths. The data further showed that the movement pattern differed significantly between men and women as well as between young adults and old adults. Movement patterns of demographic groups could provide support to planning for sustainable urban green areas, help avoid conflict, identify areas for solitude and ensure equal access for people of different gender and age.
|
|
| 33. |
- Eliasson, Peter, et al.
(author)
-
Forest carbon balances at the landscape scale investigated with the Q model and the CoupModel - Responses to intensified harvests
- 2013
-
In: Forest Ecology and Management. - : Elsevier. - 0378-1127 .- 1872-7042. ; 290, s. 67-78
-
Journal article (peer-reviewed)abstract
- The increasing demand for solid biofuels, such as logging residue fuels, has highlighted the importance of considering that, in contrast to fossil fuels, biofuels are produced in dynamic ecosystems. The environmental effects of changes in management policy, whether positive and negative, are not obvious. For example, calculations of the carbon budget in single forest stands show that the carbon balance switches dramatically from uptake to loss at final felling. The time taken to recover the carbon losses after disturbance can span decades to centuries. However, forests are not managed on the single stand level but on the landscape scale. Thus, for example, final felling occurs by definition only once for each rotation period on the whole area considered in a single stand, but within the same time span, it occurs frequently on a fraction of the area in a landscape. The actual frequency and ratio of land area affected each year by final felling depend on the age distribution and rotation age of all stands present in the landscape. In order to reliably evaluate the consequences of new management policies, the aggregated effects of a number of individual stands need to be considered. Here we used two different ecosystem models (the Q model and the CoupModel) to compare the carbon budgets of conventional harvesting of stems on a single-stand level and on the landscape scale under different harvesting intensities. In the calculations, the landscape was assumed to consist of many stands, all of different ages and each representing one year of a given rotation period. The results showed that the aggregated carbon balance in the forest landscape was less dramatic than that of a single stand. Provided that environmental factors and management policy remain unchanged, the aggregated carbon balance remains stable over time in any landscape. However, the carbon gains from harvesting and its effects on soil carbon stock occur on different time scales. While any change in harvesting system takes a long time to be fully implemented, changes in the proportion of increased removals take effect without delay, while components of soil organic carbon have response times longer than centuries. The carbon gain after introducing removal of logging residues starts to increase immediately at the first harvest in a landscape. The quantities of soil carbon lost with the increased removals are always less than the removals in biomass. Soil carbon losses show a declining response over time.
|
|
| 34. |
- Anderbrant, Olle, et al.
(author)
-
Pheromone of the elm bark beetle Scolytus laevis (Coleoptera Scolytidae) : stereoisomers of 4-methyl-3-heptanol reduce interspecific competition
- 2010
-
In: Chemoecology. - : Springer Science and Business Media LLC. - 0937-7409 .- 1423-0445. ; 20:3, s. 179-187
-
Journal article (peer-reviewed)abstract
- Stereoisomers of 4-methyl-3-heptanol (MH) are pheromone components of several Scolytus bark beetles. The elm bark beetle Scolytus laevis (Coleoptera: Scolytidae) has in previous studies been caught in traps baited with commercial MH containing all four stereoisomers, but the lure has been considered a weak attractant. In this study, we addressed the question whether stereospecific responses by S. laevis to stereoisomers of MH might contribute to its niche separation from other sympatric Scolytus species. Using GC-MS, we analyzed extracts of hindguts and abdomens from male and female S. laevis and the sympatric S. triarmatus. We also tested all four MH-stereoisomers individually and in combinations in the field to determine their role for S. laevis. All four stereoisomers were synthesized via a boronic ester method with 1,2-dicyclohexylethanediol as chiral director. In addition, the (3S,4R)-stereoisomer of MH was prepared through enantioselective, lipase-mediated transesterification of a mixture of the four stereoisomers of MH. Females of both species contained small amounts of syn-MH, and males contained trace amounts of anti-MH. The anti stereoisomer (3R,4S)-MH was attractive to male and female S. laevis, whereas the syn stereoisomer (3S,4S)-MH acted as an inhibitor or deterrent and reduced the catch when added to the attractive isomer. The syn isomer is the main aggregation pheromone component of the larger and sympatric S. scolytus and possibly also of S. triarmatus. The avoidance response of S. laevis to the (3S,4S)-stereoisomer may reduce interspecific competition for host trees.
|
|
| 35. |
- Hibbett, David, et al.
(author)
-
Sequence-based classification and identification of Fungi
- 2016
-
In: Mycologia. - 0027-5514. ; 108:6, s. 1049-1068
-
Research review (peer-reviewed)abstract
- Fungal taxonomy and ecology have been revolutionized by the application of molecular methods and both have increasing connections to genomics and functional biology. However, data streams from traditional specimen- and culture-based systematics are not yet fully integrated with those from metagenomic and metatranscriptomic studies, which limits understanding of the taxonomic diversity and metabolic properties of fungal communities. This article reviews current resources, needs, and opportunities for sequence-based classification and identification (SBCI) in fungi as well as related efforts in prokaryotes. To realize the full potential of fungal SBCI it will be necessary to make advances in multiple areas. Improvements in sequencing methods, including long-read and single-cell technologies, will empower fungal molecular ecologists to look beyond ITS and current shotgun metagenomics approaches. Data quality and accessibility will be enhanced by attention to data and metadata standards and rigorous enforcement of policies for deposition of data and workflows. Taxonomic communities will need to develop best practices for molecular characterization in their focal clades, while also contributing to globally useful datasets including ITS. Changes to nomenclatural rules are needed to enable valid publication of sequence-based taxon descriptions. Finally, cultural shifts are necessary to promote adoption of SBCI and to accord professional credit to individuals who contribute to community resources.
|
|
| 36. |
- Jensen, Anna M, et al.
(author)
-
Shrubs protect oak seedlings against ungulate browsing in temperate broadleaved forests of conservation interest: A field experiment
- 2012
-
In: Forest Ecology and Management. - : Elsevier BV. - 0378-1127 .- 1872-7042. ; 266, s. 187-193
-
Journal article (peer-reviewed)abstract
- In many oak-rich temperate broadleaved forests of conservation value, high ungulate browsing pressure restricts oak regeneration. We examined the protection of oak (Quercus sp.) seedlings from browsing provided by naturally occurring shrubs in 10 forests across southern Sweden over 3 years. We planted oak seedlings in four plots in each forest; two with naturally regenerated shrubs and two with no shrubs. Ungulate browsers were excluded from two plots at each site, one with and one without shrubs. Fencing provided the best protection against ungulate browsers for the seedlings. The probability of a seedling being browsed (browsing frequency) was approximately 20% units lower for individuals growing among shrubs than for individuals growing in the absence of shrubs. When browsing did occur, the intensity (measured as a reduction in height growth) was significantly lower for seedlings in shrubs. Regression analyses showed that browsing frequency increased on seedlings in tall shrubs, and decreased on seedlings that had been browsed previously. Browsing intensity decreased if the seedling grew in tall and dense shrubs. Browsing frequency and intensity increased on oak seedlings that over topped the shrub canopy. Increased abundance of the prickled Rubus idaeus and Rubus fruticosus coll. in plots with shrubs did not affect browsing frequency and intensity. Two and a half years after planting, oak seedling mortality increased by the presence of shrubs. Although shrubs restricted oak seedling growth, we conclude that shrubs initially facilitated oak regeneration by concealment, and subsequently by numeric dilution. Shrubs may be used to reduce browsing damages if long-term evaluation indicates a net positive outcome for oak survival and growth.
|
|
| 37. |
|
|
| 38. |
- Benavent-Celma, Clara, et al.
(author)
-
Current practices and emerging possibilities for reducing the spread of oomycete pathogens in terrestrial and aquatic production systems in the European Union
- 2022
-
In: Fungal Biology Reviews. - : Elsevier. - 1749-4613 .- 1878-0253. ; 40, s. 19-36
-
Journal article (peer-reviewed)abstract
- Diseases caused by oomycete pathogens are a global threat to forestry, agriculture and aquaculture. Because of their complex life cycles, characterised by dormant resting structures that enable their survival for years under hostile environmental conditions, reducing the spread of oomycetes is a challenging task. In this review, we present an overview of this challenge, starting from the need to understand the natural and anthropogenic dispersal pathways of these pathogens. Focusing on the European Union, we explore current legislation that forms a backbone for biosecurity protocols against the spread of oomycetes through trade and transport. We discuss the options for prevention, containment and long-term management of oomycetes in different production settings, emphasising the importance of prevention as the most cost-efficient strategy to reduce the spread of these pathogens. Finally, we highlight some of the new and emerging technologies and strategies as potential tools in the integrated pest management of animal and plant diseases caused by oomycetes. We emphasise the urgency of actions to halt the global spread of these pathogens.
|
|
| 39. |
- Löfgren, Stefan, et al.
(author)
-
Water chemistry in 179 randomly selected Swedish headwaterstreams related to forest production, clear-felling and climate
- 2014
-
In: Environmental Monitoring & Assessment. - : Springer Berlin/Heidelberg. - 0167-6369 .- 1573-2959. ; 186:12, s. 8907-8928
-
Journal article (peer-reviewed)abstract
- From a policy perspective, it is important to understand forestry effects on surface waters from a landscape perspective. The EU Water Framework Directive demands remedial actions if not achieving good ecological status. In Sweden, 44 % of the surface water bodies have moderate ecological status or worse. Many of these drain catchments with a mosaic of managed forests. It is important for the forestry sector and water authorities to be able to identify where, in the forested landscape, special precautions are necessary. The aim of this study was to quantify the relations between forestry parameters and headwater stream concentrations of nutrients, organic matter and acid-base chemistry. The results are put into the context of regional climate, sulphur and nitrogen deposition, as well as marine influences. Water chemistry was measured in 179 randomly selected headwater streams from two regions in southwest and central Sweden, corresponding to 10 % of the Swedish land area. Forest status was determined from satellite images and Swedish National Forest Inventory data using the probabilistic classifier method, which was used to model stream water chemistry with Bayesian model averaging. The results indicate that concentrations of e.g. nitrogen, phosphorus and organic matter are related to factors associated with forest production but that it is not forestry per se that causes the excess losses. Instead, factors simultaneously affecting forest production and stream water chemistry, such as climate, extensive soil pools and nitrogen deposition, are the most likely candidates The relationships with clear-felled and wetland areas are likely to be direct effects.
|
|
| 40. |
- Oni, Stephen, et al.
(author)
-
Local- and landscape-scale impacts of clear-cuts and climate change on surface water dissolved organic carbon in boreal forests
- 2015
-
In: Journal of Geophysical Research - Biogeosciences. - 2169-8953 .- 2169-8961. ; 120:11, s. 2402-2426
-
Journal article (peer-reviewed)abstract
- Forest harvesting and climate change may significantly increase concentrations and fluxes of dissolved organic carbon (DOC) in boreal surface waters. However, the likely magnitude of any effect will vary depending on the landscape-element type and spatial scale. We used a chain of hydrological, empirical, and process-based biogeochemical models coupled to an ensemble of downscaled Regional Climate Model experiments to develop scenario storylines for local- and landscape-scale effects of forest harvesting and climate change on surface water DOC concentrations and fluxes. Local-scale runoff, soil temperature, and DOC dynamics were simulated for a range of forest and wetland landscape-element types and at the larger landscape scale. The results indicated that climate change will likely lead to greater winter flows and earlier, smaller spring peaks. Both forest harvesting and climate change scenarios resulted in large increases in summer and autumn runoff and higher DOC fluxes. Forest harvesting effects were clearly apparent at local scales. While at the landscape scale, approximately 1 mg L−1 (or 10%) of the DOC in surface waters can be attributed to clear-cuts, both climate change and intensified forestry can each increase DOC concentrations by another 1 mg L−1 in the future, which is less than that seen in many waterbodies recovering from acidification. These effects of forestry and climate change on surface water DOC concentrations are additive at a landscape scale but not at the local scale, where a range of landscape-element specific responses were observed.
|
|
| 41. |
- Blennow, Kristina, et al.
(author)
-
Societal impacts of storm damage
- 2013
-
In: Living with Storm Damage to Forests. What science can tell us. - 9789525980097 ; :3, s. 70-77
-
Book chapter (other academic/artistic)
|
|
| 42. |
- Palsdottir, Anna Maria, et al.
(author)
-
Nature-Based Therapeutic Interventions
- 2011
-
In: Forests, Trees and Human Health. - Dordrecht : Springer Netherlands. - 9789048198054 ; , s. 309-342
-
Book chapter (other academic/artistic)
|
|
| 43. |
- Sjöman, Henrik, et al.
(author)
-
Evaluation of Alnus subcordata for urban environments through assessment of drought and flooding tolerance
- 2021
-
In: Dendrobiology. - : Bogucki Wydawnictwo Naukowe. - 1641-1307. ; 85, s. 39-50
-
Journal article (peer-reviewed)abstract
- The urban environment is stressful and trees experience multiple stresses, including drought, flooding, and extreme heat, all of which are likely to increase under future climate warming and increasing urbanisation. In the selection of tree species to maximise ecosystem services, tolerance to site characteristics such as flooding and severe drought is of critical importance. This study evaluated the suitability of a rare species, Mims subcordata C.A. Mey (Caucasian alder) from the Hyrcanian forests of southern Azerbai-jan, for its functionality as an urban tree. A total of 48 pot-grown, two-year-old saplings of A. subcordata were tested in a greenhouse experiment using a complete randomised block design. Each block contained four replicates of three treatments (waterlogging, drought, control), with 16 plants per treatment. Height differences between treatments were measured, and water status was estimated by determination of midday leaf water potential (psi(L)) and stomatal conductance (g(s)). To estimate drought tolerance reaction in the treatments, leaf water potential at turgor loss (psi(P0)) was used together with broken-stick modelling of water status over time. A. subcordata plants showed no height increase, while plants in both the waterlogged and control treatments increased in height during the nine-week experiment. Over 63 days of flooding, plant water status was slightly more negative in the waterlogging treatment, but did not deviate essentially from the control. In the drought treatment, plant water status rapidly deviated from the control. There was a significant difference in psi(P0) between treatments, with drought-treated plants showing the lowest value (-2.31 MPa). This study demonstrated that A. subcordata has limited tolerance to drought and seems to rely more on water loss-avoiding strategies. However, the species may be usable at periodically waterlogged sites, due to its high tolerance to flooding. It could therefore be recommended for wet urban environments and stormwater management facilities, for which reliable guidance on suitable trees is currently lacking.
|
|
| 44. |
- Hyvonen, R., et al.
(author)
-
The likely impact of elevated [CO2], nitrogen deposition, increased temperature and management on carbon sequestration in temperate and boreal forest ecosystems: a literature review
- 2007
-
In: New Phytologist. - Cambridge : Wiley. - 0028-646X .- 1469-8137. ; 173:3, s. 463-480
-
Research review (peer-reviewed)abstract
- Temperate and boreal forest ecosystems contain a large part of the carbon stored on land, in the form of both biomass and soil organic matter. Increasing atmospheric [CO2], increasing temperature, elevated nitrogen deposition and intensified management will change this C store. Well documented single-factor responses of net primary production are: higher photosynthetic rate (the main [CO2] response); increasing length of growing season (the main temperature response); and higher leaf-area index (the main N deposition and partly [CO2] response). Soil organic matter will increase with increasing litter input, although priming may decrease the soil C stock initially, but litter quality effects should be minimal (response to [CO2], N deposition, and temperature); will decrease because of increasing temperature; and will increase because of retardation of decomposition with N deposition, although the rate of decomposition of high-quality litter can be increased and that of low-quality litter decreased. Single-factor responses can be misleading because of interactions between factors, in particular those between N and other factors, and indirect effects such as increased N availability from temperature-induced decomposition. In the long term the strength of feedbacks, for example the increasing demand for N from increased growth, will dominate over short-term responses to single factors. However, management has considerable potential for controlling the C store.
|
|
| 45. |
- Holz, Maire, et al.
(author)
-
Gross nitrogen dynamics in the mycorrhizosphere of an organic forest soil
- 2016
-
In: Ecosystems. - : Springer Science and Business Media LLC. - 1432-9840 .- 1435-0629. ; 19:2, s. 284-295
-
Journal article (peer-reviewed)abstract
- The rhizosphere is a hot-spot for biogeochemical cycles, including production of greenhouse gases, as microbial activity is stimulated by rhizodeposits released by roots and mycorrhizae. The biogeochemical cycle of nitrogen (N) in soil is complex, consisting of many simultaneously occurring processes. In situ studies investigating the effects of roots and mycorrhizae on gross N turnover rates are scarce. We conducted a 15N tracer study under field conditions in a spruce forest on organic soil, which was subjected to exclusion of roots and roots plus ectomycorrhizae (ECM) for 6 years by trenching. The forest soil had, over the 6-year period, an average emission of nitrous oxide (N2O) of 5.9 ± 2.1 kg N2O ha−1 year−1. Exclusion of roots + ECM nearly tripled N2O emissions over all years, whereas root exclusion stimulated N2O emission only in the latest years and to a smaller extent. Gross mineralization–ammonium (NH4 +) immobilization turnover was enhanced by the presence of roots, probably due to high inputs of labile carbon, stimulating microbial activity. We found contrasting effects of roots and ECM on N2O emission and mineralization, as the former was decreased but the latter was stimulated by roots and ECM. The N2O emission was positively related to the ratio of gross NH4 + oxidation (that is, autotrophic nitrification) to NH4 + immobilization. Ammonium oxidation was only stimulated by the presence of ECM, but not by the presence of roots. Overall, we conclude that plants and their mycorrhizal symbionts actively control soil N cycling, thereby also affecting N2O emissions from forest soils. Consequently, adapted forest management with permanent tree cover avoiding clearcutting could be a means to reduce N2O emissions and potential N leaching; despite higher mineralization in the presence of roots and ECM, N2O emissions are decreased as the relative importance of NH4 + oxidation is decreased, mainly due to a stimulated microbial NH4 + immobilization in the mycorrhizosphere.
|
|
| 46. |
- Rappe George, Martin, et al.
(author)
-
Nitrogen leaching following clear-cutting and soil scarification at a Scots pine site – A modelling study of a fertilization experiment
- 2017
-
In: Forest Ecology and Management. - : Elsevier. - 0378-1127 .- 1872-7042. ; 385, s. 281-294
-
Journal article (peer-reviewed)abstract
- Boreal forest stands fertilized with nitrogen (N) might be susceptible to elevated N leaching following clear-cutting, with consequences for water quality and soil acidification. Here, we studied a forest fertilization experiment with N, 165 Hagfors, in Sweden during the first six years (2006–2011) following clear-cutting. The N fertilization treatments were 0 kg ha−1 (0 N) and 450 kg ha−1 of N (450 N), supplied during 1981–1992 to a Scots pine (Pinus sylvestris L.) stand: the stand was harvested in March 2006. Following clear-cutting, disc trenching was performed and furrows (F), ridges (R) and areas in-between two furrows (IB) were created. We calculated the N leaching fluxes and ecosystem N budget during 2006–2011 as affected by previous N fertilization, disc trenching and interactions thereof, at Hagfors by the use of a process-based biogeophysical ecosystem model (CoupModel). The model was calibrated against measurements of soil water and temperature dynamics and previously reported measurements of N in soil solution, soil organic matter and vegetation biomass. Criteria for acceptance of model estimates were based on the range enclosed by the 95% confidence intervals of the mean of the field data used in calibration sampled at low frequency (1–2 occasions) and a combination of the mean error and the coefficient of the determination for variables sampled at a higher frequency (28–1921 occasions). The accepted model estimates of the mean annual leaching rates of N were 3.1 (range 1.4–22.7) and 2.4 (range 0.8–7.0) kg ha−1 of N year−1 in the treatments 0 N and 450 N, respectively, without disc trenching. Disc trenching increased N leaching during the regeneration phase, more so in the 450 N treatment (mean 6.1, range 1.9–16.7 kg ha−1 of N year−1) than in the 0 N treatment (mean 4.6, range 1.9–12.9 kg ha−1 of N year−1). Overall, differences in the posterior model parameter estimates between N treatments and disc trenched treatments F, R and IB were related to the soil physical component: the differences resulted in enhanced drainage in the disc trenched treatments. We conclude that vegetation biomass N accumulation controlled soil water N leaching, and disc trenching increased N leaching from the previously N fertilized plots at Hagfors by its effects on water drainage flow and vegetation N uptake. This finding warrants more research since N fertilization followed by soil scarification in boreal forests is a practice which may increase in the future.
|
|
| 47. |
- Van Lun, Michiel, et al.
(author)
-
Subunit Interface Dynamics in Hexadecameric Rubisco
- 2011
-
In: Journal of Molecular Biology. - : Elsevier BV. - 0022-2836 .- 1089-8638. ; 411:5, s. 1083-1098
-
Journal article (peer-reviewed)abstract
- Ribulose-1,5-bisphosphate (RuBP) carboxylase/oxygenase (Rubisco) plays an important role in the global carbon cycle as a hub for biomass. Rubisco catalyzes not only the carboxylation of RuBP with carbon dioxide but also a competing oxygenation reaction of RuBP with a negative impact on photosynthetic yield. The functional active site is built from two large (L) subunits that form a dimer. The octameric core of four L(2) dimers is held at each end by a cluster of four small (S) subunits, forming a hexadecamer. Each large subunit contacts more than one S subunit. These interactions exploit the dynamic flexibility of Rubisco, which we address in this study. Here, we describe seven different types of interfaces of hexadecameric Rubisco. We have analyzed these interfaces with respect to the size of the interface area and the number of polar interactions, including salt bridges and hydrogen bonds in a variety of Rubisco enzymes from different organisms and different kingdoms of life, including the Rubisco-like proteins. We have also performed molecular dynamics simulations of Rubisco from Chlamydomonas reinhardtii and mutants thereof. From our computational analyses, we propose structural checkpoints of the S subunit to ensure the functionality and/or assembly of the Rubisco holoenzyme. These checkpoints appear to fine-tune the dynamics of the enzyme in a way that could influence enzyme performance.
|
|
| 48. |
- Kahlert, Maria
(author)
-
Jämförande test av kiselalgers och bottenfaunas lämplighet som indikatorer för närsaltshalt och surhet inom miljömålsuppföljningen
- 2011
-
Reports (other academic/artistic)abstract
- Data från 321 enskilda vattendrag med information om vattenkemi, kiselalger och bottenfauna sammanställdes och analyserades för att jämföra kiselalgers och bottenfaunas lämplighet som indikatorer på närsaltshalt och surhet inom miljömålsuppföljningen. Vad gäller surhet gav kiselalgsindexet en mer precis och pålitlig överrensstämmelse med uppmätta pH-halter (både årsmedel och lägsta pH under året) än bottenfaunaindexen. Kiselalgsindexet hade även en lägre mellanårsvariation som var starkare kopplad till variationen i pH. Vi fann inga regionala skillnader i bedömningen av surhet med något av indexen. Vad gäller bedömningen av närsalter var skillnaderna mellan de jämförda indexen mindre men kiselalgerna svarade i allmänhet något bättre mot de uppmätta halterna av närsalter än bottenfaunaindexen. Vid en jämförelse av bedömning av ekologisk status för vattendrag som klassats med båda bedömningsgrunderna ger bottenfaunan i genomsnitt en högre status än kiselalgerna, särskilt i södra Sverige. Kiselalgernas bedömning av ekologisk status korrelerade bättre än bottenfaunan med statusklassning av näringsämnen (totalfosfor) i vattendrag . Vi konstaterar att skillnaderna i bedömning av ekologisk status med avseende på näring behöver undersökas vidare men att för miljömålsuppföljningens syfte att hitta en väl fungerande och kostnadseffektiv biologisk indikator på vattenkemiska variabler som surhet och närsaltshalt så verkar kiselalger bättre lämpade än bottenfauna.
|
|
| 49. |
- Persson, Martin, 1976, et al.
(author)
-
A method for calculating a land-use change carbon footprint (LUC-CFP) for agricultural commodities - applications to Brazilian beef and soy, Indonesian palm oil
- 2014
-
In: Global Change Biology. - : Wiley. - 1365-2486 .- 1354-1013. ; 20:11, s. 3482-3491
-
Journal article (peer-reviewed)abstract
- The world's agricultural system has come under increasing scrutiny recently as an important driver of global climate change, creating a demand for indicators that estimate the climatic impacts of agricultural commodities. Such carbon footprints, however, have in most cases excluded emissions from land-use change and the proposed methodologies for including this significant emissions source suffer from different shortcomings. Here, we propose a new methodology for calculating land-use change carbon footprints for agricultural commodities and illustrate this methodology by applying it to three of the most prominent agricultural commodities driving tropical deforestation: Brazilian beef and soybeans, and Indonesian palm oil. We estimate land-use change carbon footprints in 2010 to be 66 tCO2/t meat (carcass weight) for Brazilian beef, 0.89 tCO2/t for Brazilian soybeans, and 7.5 tCO2/t for Indonesian palm oil, using a 10 year amortization period. The main advantage of the proposed methodology is its flexibility: it can be applied in a tiered approach, using detailed data where it is available while still allowing for estimation of footprints for a broad set of countries and agricultural commodities; it can be applied at different scales, estimating both national and subnational footprints; it can be adopted to account both for direct (proximate) and indirect drivers of land-use change. It is argued that with an increasing commercialization and globalization of the drivers of land-use change, the proposed carbon footprint methodology could help leverage the power needed to alter environmentally destructive land-use practices within the global agricultural system by providing a tool for assessing the environmental impacts of production, thereby informing consumers about the impacts of consumption and incentivizing producers to become more environmentally responsible.
|
|
| 50. |
- Palosuo, T., et al.
(author)
-
A multi-model comparison of soil carbon assessment of a coniferous forest stand
- 2012
-
In: Environmental Modelling & Software. - : Elsevier. - 1364-8152 .- 1873-6726. ; 35, s. 38-49
-
Journal article (peer-reviewed)abstract
- We simulated soil carbon stock dynamics of an Austrian coniferous forest stand with five soil-only models (Q, ROMUL, RothC, SoilCO2/RothC and Yasso07) and three plant-soil models (CENTURY, CoupModel and Forest-DNDC) for an 18-year period and the decomposition of a litter pulse over a 100-year period. The objectives of the study were to assess the consistency in soil carbon estimates applying a multi-model comparison and to present and discuss the sources of uncertainties that create the differences in model results. Additionally, we discuss the applicability of different modelling approaches from the view point of large-scale carbon assessments. Our simulation results showed a wide range in soil carbon stocks and stock change estimates reflecting substantial uncertainties in model estimates. The measured stock change estimate decreased much more than the model predictions. Model results varied not only due to the model structure and applied parameters, but also due to different input information and assumptions applied during the modelling processes. Initialization procedures applied with the models induced large differences among the modelled soil carbon stocks and stock change estimates. Decomposition estimates of the litter pulse driven by model structures and parameters also varied considerably. Our results support the use of relatively simple soil-only models with low data requirements in inventory type of large-scale carbon assessments. It is important that the modelling processes within the national inventories are transparently reported and special emphasis is put on how the models are used, which assumptions are applied and what is the quality of data used both as input and to calibrate the models.
|
|
