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  • Nelson, Ronald, et al. (author)
  • qtl.outbred: Interfacing outbred line cross data with the R/qtl mapping software
  • 2011
  • In: BMC Research Notes. - : BioMed Central. - 1756-0500. ; 4:154
  • Journal article (peer-reviewed)abstract
    • Backgroundqtl.outbred is an extendible interface in the statistical environment, R, for combining quantitative trait loci (QTL) mapping tools. It is built as an umbrella package that enables outbred genotype probabilities to be calculated and/or imported into the software package R/qtl.FindingsUsing qtl.outbred, the genotype probabilities from outbred line cross data can be calculated by interfacing with a new and efficient algorithm developed for analyzing arbitrarily large datasets (included in the package) or imported from other sources such as the web-based tool, GridQTL.Conclusionqtl.outbred will improve the speed for calculating probabilities and the ability to analyse large future datasets. This package enables the user to analyse outbred line cross data accurately, but with similar effort than inbred line cross data.
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Type of publication
journal article (1)
Type of content
peer-reviewed (1)
Author/Editor
Carlborg, Örjan (1)
Shen, Xia (1)
Nelson, Ronald (1)
University
Uppsala University (1)
Högskolan Dalarna (1)
Swedish University of Agricultural Sciences (1)
Language
English (1)
Research subject (UKÄ/SCB)
Natural sciences (1)
Medical and Health Sciences (1)
Agricultural Sciences (1)
Year
2011 (1)

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