| 1. |
- Arnell, Matilda, et al.
(author)
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Landscape-scale range filling and dispersal limitation of woody plants
- 2022
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In: Journal of Biogeography. - : Wiley. - 0305-0270 .- 1365-2699. ; 49:11, s. 2028-2036
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Journal article (peer-reviewed)abstract
- Aim: The extent to which species fill their predicted current ranges and the underlying process of dispersal limitation have implications for species' abilities to track climate change. Range filling is intimately related to spatial scale, yet range filling estimates at high resolutions are largely lacking. In this study, we aim to estimate range filling and dispersal limitation at a high resolution for woody plants with different dispersal systems and habitat affinities.Location: Sweden.Taxon: All genera of woody plants (trees and shrubs).Methods: We estimated landscape-scale range filling for 64 species. Two main dispersal systems, vertebrate dispersal and abiotic dispersal, occurred among these species. Range filling was estimated as the realized range divided by the potential range, that is, the occupied proportion of a species' modelled range, at a 1 km2 resolution. We estimated potential ranges using species distribution models and realized ranges from presence records. To increase the likelihood that absences represented true absences the estimations were restricted to areas with high sampling effort. We tested the effects of dispersal system on range filling, controlling for species' habitat affinities.Results: Vertebrate-dispersed woody species had significantly lower landscape-scale range filling than species with abiotic dispersal. Range filling was also linked to habitat affinity. Species associated with intermediate levels of light and moisture had the highest range filling estimates.Main conclusions: Landscape-scale range filling of woody species is linked to their dispersal traits. When controlling for habitat affinity, our result suggests that dispersal limitation partly explains the lower occupancy in suitable habitat found for vertebrate-dispersed plants. Given that vertebrate-dispersed species fail to reach suitable habitats at this scale, they are less likely to track changes in climate than woody plants with abiotic dispersal.
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| 2. |
- Aronsson, Heléne, 1994, et al.
(author)
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Expert-based range maps cannot be replicated using data-driven methods but macroecological conclusions arising from them can
- 2024
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In: JOURNAL OF BIOGEOGRAPHY. - 0305-0270 .- 1365-2699. ; 51:8, s. 1549-1559
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Journal article (peer-reviewed)abstract
- AimAnswering many fundamental and applied scientific questions relies on accurate geographic range maps for species, such as those compiled by experts working with the International Union for Conservation of Nature (IUCN). However, these maps are resource demanding to produce and only available for a limited number of organisms. Here, we test to what extent standardized, data-driven methods based on publicly available occurrences can reproduce expert-based IUCN range maps and the macroecological conclusions drawn from them.LocationGlobal.Time PeriodPresent.TaxaBirds.Materials and MethodsWe estimated the geographic ranges for 7385 non-marine bird species which either were non-migratory or had spatially connected breeding and wintering ranges from publicly available, georeferenced point occurrences. We then quantified the spatial overlap between these range estimates and the IUCN expert-derived range estimates. Finally, we compared global species richness patterns and the environmental correlates that emerge from both approaches.ResultsWe find that range estimates based on point occurrence records overlap on average 52% with expert range estimates for the same species. The global species richness patterns estimated under both approaches are overall similar but show local and regional differences, for example, in the tropical Andes of northern South America and the Central Arc region of Africa. The estimated global drivers of richness are similar.Main ConclusionsExpert-derived estimates of species distributions are not reproducible by data-driven approaches relying on currently available public records, even for well-documented taxa such as birds. However, these discrepancies do not substantially change our macroecological understanding of global drivers of bird diversity.
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| 3. |
- Azevedo, Josué, et al.
(author)
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Contrasting patterns of phylogenetic turnover in amphibians and reptiles are driven by environment and geography in Neotropical savannas
- 2021
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In: Journal of Biogeography. - : Wiley. - 0305-0270 .- 1365-2699. ; 48:8, s. 2008-2021
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Journal article (peer-reviewed)abstract
- Aim: Cross-taxonomic congruence in biodiversity patterns is key to understanding the main drivers of community structure, for biogeographical regionalization and to guide conservation. We aim to map the patterns of phylogenetic turnover and disentangle the geographical and environmental factors that drive the phylogenetic composition of distinct faunal assemblages. Location: The Cerrado savannas of South America. Taxa: Reptiles and amphibians. Methods: We measured the proportion of phylogenetic branches shared among sites (i.e. phylogenetic turnover) using presence-absence matrices for all species in the Cerrado and for endemics only, including only well-sampled localities from previously compiled inventories. We then tested whether phylogenetic turnover is different from null expectations based on taxonomic turnover. We used generalized dissimilarity modelling (GDM) to test whether geography, topography, soil or climate best explain phylogenetic turnover. Finally, we mapped the observed and the GDM-predicted clustering of phylogenetic turnover to assess geographical congruence between reptiles and amphibians. Results: For all reptiles, geographical distance is the most important factor explaining phylogenetic turnover, whereas for endemic reptiles and amphibians, in general, a set of climatic variables and relief roughness are more important. We did not find any significant correlation between the phylogenetic turnover of reptiles and amphibians, as evidenced by non-congruent phylogenetic clustering and by different responses to geographical and environmental gradients. Main conclusions: The different relationships of phylogenetic turnover of reptiles and amphibians to geographical and environmental distances have ultimately shaped the phylogenetic regionalization of these two groups. This incongruence indicates the differential importance of niche filtering, dispersal limitation and the influence of neighbouring biomes in the regionalization of different groups of organisms. Therefore, diversity patterns of one group should ideally not be used as a surrogate to map general patterns or to understand the drivers of diversity of other co-occurring groups. Thus, conservation efforts need to be designed and implemented for each organismal group. © 2021 John Wiley & Sons Ltd
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| 4. |
- Bogota-Angel, G., et al.
(author)
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Climate and geological change as drivers of Mauritiinae palm biogeography
- 2021
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In: Journal of Biogeography. - : Wiley. - 0305-0270 .- 1365-2699. ; 48:5, s. 1001-1022
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Journal article (peer-reviewed)abstract
- Aim Forest composition and distribution are determined by a myriad of factors, including climate. As models of tropical rain forest, palms are often used as indicator taxa, particularly the Mauritiinae. We question, what characterizes the Mauritiinae pollen in the global fossil record? And when did the Mauritiinae become endemic to South America? Location Global tropics. Taxon Mauritiinae palms (Arecaceae: Lepidocaryeae). Methods Pollen trait data from extinct and extant Mauritiinae pollen were generated from light-, scanning-, and transmission electron microscopy. Statistical morphometric analysis was used to define species and their relationships to other Mauritiinae. We also compiled a comprehensive pollen database for extinct and extant Mauritiinae and mapped their global geographical distribution from Late Cretaceous to present, using GBIF and fossil data. Results Our morphometric analysis identified 18 species (11 extinct and seven extant), all exhibiting exine indentations, a synapomorphy of the subtribe. The fossil taxa and early divergent extant Lepidocaryum are all monosulcate, whereas the extant Mauritia and Mauritiella species are all monoulcerate. Paleobiogeographical maps of fossil Mauritiinae pollen occurrences suggest the taxon originated in equatorial Africa during the Cretaceous, and expanded their range to South America, and to India in the Paleocene. Range retraction started in the early Eocene with extirpation from India, and reduction in diversity in Africa culminating at the Eocene-Oligocene Transition (EOT). In contrast, in South America, the distribution is maintained, and since the Neogene Mauritiinae palms are mostly restricted to swampy, lowland habitats. Main conclusions Morphometric analysis shows that since their origin Mauritiinae pollen are relatively species poor, and Mauritiidites resembles Lepidocaryum. We also conclude that the biogeographical history of the Mauriitinae and, by extension, tropical forests was strongly affected by global climatic cooling events. In particular, the climate change at the EOT was a fundamental determinant of current tropical forest distribution.
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| 5. |
- Cai, Tianlong, et al.
(author)
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The role of evolutionary time, diversification rates and dispersal in determining the global diversity of a large radiation of passerine birds
- 2020
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In: Journal of Biogeography. - : Wiley. - 0305-0270 .- 1365-2699. ; 47:7, s. 1612-1625
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Journal article (peer-reviewed)abstract
- Aim: Variation in species diversity among different geographical areas may result from differences in speciation and extinction rates, immigration and time for diversification. An area with high species diversity may be the result of a high net diversification rate, multiple immigration events from adjacent regions, and a long time available for the accumulation of species (known as the 'time-for-speciation effect'). Here, we examine the relative importance of the three aforementioned processes in shaping the geographical diversity patterns of a large radiation of passerine birds. Location: Global. Taxon: Babblers (Aves: Passeriformes). Methods: Using a comprehensive phylogeny of extant species (similar to 90% sampled) and distributions of the world's babblers, we reconstructed their biogeographical history and analysed the diversification dynamics. We examined how species richness correlates with the timing of regional colonization, the number of immigration events and the rate of speciation within all 13 geographical distribution regions. Results: We found that babblers likely originated in the Sino-Himalayan Mountains (SHM) in the early Miocene, suggesting a long time for diversification and species accumulation within the SHM. Regression analyses showed the regional diversity of babblers can be well explained by the timing of the first colonization within of these areas, while differences in rates of speciation or immigration have far weaker effects. Nonetheless, the rapid speciation of Zosterops during the Pleistocene has accounted for the increased diversification and accumulation of species in the oceanic islands. Main Conclusions: Our results suggest that the global diversity patterns of babblers have predominantly been shaped by the time-for-speciation effect. Our findings also support an origin centred in tropical and subtropical parts of the SHM, with a cradle of recent diversification in the oceanic islands of the Indo-Pacific and Indian Ocean regions, which provides new insights into the generation of global biodiversity hotspots.
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| 6. |
- Calió, Maria Fernanda, et al.
(author)
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Spatio-temporal evolution of the catuaba clade in the Neotropics: Morphological shifts correlate with habitat transitions
- 2022
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In: Journal of Biogeography. - : Wiley. - 0305-0270 .- 1365-2699. ; 49:6, s. 1086-1098
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Journal article (peer-reviewed)abstract
- Aim The biotic assembly of one of the most species-rich savannas, the Brazilian Cerrado, has involved recruitment of lineages from several surrounding regions. However, we lack a clear understanding about the timing and pathways of biotic exchanges among these regions and about the role those interchanges had in the assembly of Neotropical biodiversity. We investigated the timing and routes of species movements between wet or seasonally dry habitats across Neotropical regions and assessed the potential for ecological adaptation by evaluating the habitat transitions correlated with morphological shifts. Location Neotropics. Taxon The plant genus Anemopaegma (Bignonieae, Bignoniaceae). Methods We inferred a Bayesian molecular phylogeny of Anemopaegma using one nuclear and two chloroplast markers. We sampled more than 90% of the known species diversity of Anemopaegma, covering its full geographical range. We estimated divergence times using a Bayesian relaxed-clock approach and inferred ancestral ranges as well as shifts in habitat and morphological characters. Results Phylogenetic analyses recovered seven main clades within Anemopaegma. The genus likely originated in Amazonia in the late Oligocene. Early-diverging lineages diversified in situ in Amazonia, particularly during the Miocene, with independent dispersal events to the Andes, Atlantic Forest and Cerrado. Shifts from seasonally dry forest to savanna habitats were correlated with shifts from liana to shrub and the loss of tendrils. Main Conclusions The timing of diversification of major lineages within Anemopaegma is consistent with major geological and climatic events that occurred during the late Palaeogene and Neogene, such as the Andean uplift and the Middle Miocene Climatic Optimum. Movements across different regions within the Neotropics were relatively common but shifts between habitats were not. The correlation in the evolution of the shrubby habit, the loss of tendrils and the shifts from forest to savanna are consistent with a scenario of ecological adaptation.
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| 7. |
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| 8. |
- da Silva, Fernando Rodrigues, et al.
(author)
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Zoogeographical regions in the Atlantic Forest: patterns and potential drivers
- 2024
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In: JOURNAL OF BIOGEOGRAPHY. - 0305-0270 .- 1365-2699.
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Journal article (peer-reviewed)abstract
- AimTo delineate present-day zoogeographical regions of terrestrial vertebrates (frogs, lizards, snakes, birds and non-volant mammals) in the Atlantic Forest. Within each taxonomic group, we examine the relative importance of abrupt climatic transitions, orographic barriers, past climate change and rivers in shaping zoogeographical boundaries.LocationSouth America's Atlantic Forest.MethodsWe applied a network-based method to delineate zoogeographical regions, using distribution data (range maps) for 455 species of frogs, 103 lizards, 220 snakes, 917 birds and 202 non-volant mammals, in 50 x 50 km grid cells. We used hierarchical generalized linear mixed-effects models to test environmental predictors associated with zoogeographical boundaries. Finally, we intersected the bioregion maps delineated for each group to identify general patterns across all vertebrates.ResultsWe identified four zoogeographical regions for birds and snakes, and five for frogs, lizards and non-volant mammals. Depending on the group, contemporary and past climate conditions, elevation variation and/or rivers were associated with zoogeographical boundaries. The combined maps indicate that the Atlantic Forest retains four spatially cohesive zoogeographical regions based on present-day distribution of vertebrates.Main conclusionsCross-taxon congruence indicates that the geographical and environmental characteristics of the Atlantic Forest have a strong influence on the location of zoogeographical regions for vertebrates. In contrast, transition zones appear to be associated with the spatial distribution of life history traits of each group, potentially explaining the observed differences in the number of bioregions across groups and the position of zoogeographical boundaries. This work paves the way for further research into the evolutionary assembly of the Atlantic Forest's zoogeographical regions and may help inform conservation priorities for maintaining their distinctive faunas.
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| 9. |
- Dahlgren, Jonas
(author)
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Colonization and extinction dynamics and their link to the distribution of European trees at the continental scale
- 2022
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In: Journal of Biogeography. - : Wiley. - 0305-0270 .- 1365-2699. ; 49, s. 117-129
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Journal article (peer-reviewed)abstract
- Aim The population processes that drive tree species distribution are still widely debated. We test the hypotheses that metapopulation processes of colonization and extinction are linked to predictions of species distribution models. Location Europe: Spain, France, Germany, Finland and Sweden. Taxon Angiosperms and Gymnosperms. Methods For 17 tree species analysed, we fitted species distribution models (SDM) relating environmental variables to presence-absence data across Europe. Then, using independent data from national forest inventories across Europe, we tested whether colonization and extinction probabilities are related to SDM occurrence probabilities. Finally, we assessed the probability of presence at metapopulation equilibrium depending on colonization and extinction probabilities. Results We found that for most species at least one process (colonization/extinction) is related to SDM occurrence probability, but rarely both (only two species). Depending on the species, the link was either for colonization or for extinction, but relationships were generally weak. In addition, the metapopulation models tended to overestimate the occurrence probability at equilibrium. Main conclusions Our study shows that metapopulation processes are only weakly related to SDM occurrence probability and call for caution in extrapolating SDM models to metapopulation dynamics.
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| 10. |
- Drobyshev, Igor
(author)
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Did long-term fire control the coniferous boreal forest composition of the northern Ural region (Komi Republic, Russia)?
- 2020
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In: Journal of Biogeography. - : Wiley. - 0305-0270 .- 1365-2699. ; 47, s. 2426-2441
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Journal article (peer-reviewed)abstract
- Aim Documenting past vegetation dynamics and fire-vegetation relationships at a regional scale is necessary to understand the mechanisms that control the functioning of the boreal forest, which is particularly sensitive to climate change. The objective of this study is to document these interactions in the Komi Republic during the Holocene. Location Yaksha, Vychegda river basin, Republic of Komi, Russia. Taxon Plantae, gymnosperms, angiosperms. Methods Two palaeoecological approaches are combined, based (1) on pollen (this study) and charcoal analysis (recomputed from our previous analysis) applied to cores from two peatlands and (2) on a REVEALS model (a part of the Landscape Reconstruction Algorithm "LRA") applied to six regional pollen cores in order to obtain a regional estimate of vegetation cover during the Holocene. Results The pollen diagram produced locally from Yaksha was compared with the regional vegetation cover determined by REVEALS. Taxa such asAbiessp. andPinusspp. showed differences between the two approaches, but vegetation signals remain qualitatively consistent. From 10,000 to 6,000 cal. yr BP, the forest was mainly a light taiga (composed ofPinus sylvestrisandBetulaspp.) and low fire activity was recorded. From 6,000 to 3,500 cal. yr BP, a dark taiga (composed ofPiceaspp.,Abies sibiricaandPinus sibirica) was established due to favourable climatic conditions, despite higher fire activity. From 3,500 cal. yr BP onwards, the continuous increase in fire activity allowed for a gradual return of light taiga,Betulaspp., likely reinforced by human activities. The dynamics ofPiceaspp. andAbies sp. were asynchronous between the sites. ForPiceaspp., the hypothesis of local inter-site expansion distributed along stream corridors is supported by the data. ForAbiessp., a bias in REVEALS, and in climate cooling may explain disparities between sites. Main conclusions We found evidence that in the early and mid-Holocene, vegetation dynamics were probably more influenced by climate, as fire activity was low. During the late Holocene, fire activity and geomorphology, eventually augmented by human activities, increased in influence on vegetation dynamics and led to the predominance of the light taiga forest up to the present.
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