| 1. |
- Bacheler, N. M., et al.
(author)
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Do walleye pollock exhibit flexibility in where or when they spawn based on variability in water temperature?
- 2012
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In: Deep-Sea Research Part Ii-Topical Studies in Oceanography. - : Elsevier BV. - 0967-0645 .- 1879-0100. ; 65-70, s. 208-216
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Journal article (peer-reviewed)abstract
- Environmental variability is increasingly recognized as a primary determinant of year-class strength of marine fishes by directly or indirectly influencing egg and larval development, growth, and survival. Here we examined the role of annual water temperature variability in determining when and where walleye pollock (Theragra chalcogramma) spawn in the eastern Bering Sea. Walleye pollock spawning was examined using both long-term ichthyoplankton data (N=19 years), as well as with historical spatially explicit, foreign-reported, commercial catch data occurring during the primary walleye pollock spawning season (February-May) each year (N=22 years in total). We constructed variable-coefficient generalized additive models (GAMs) to relate the spatially explicit egg or adult catch-per-unit-effort (CPUE) to predictor variables including spawning stock biomass, season, position, and water temperature. The adjusted R-2 value was 63.1% for the egg CPUE model and 35.5% for the adult CPUE model. Both egg and adult GAMs suggest that spawning progresses seasonally from Bogoslof Island in February and March to Outer Domain waters between the Pribilof and Unimak Islands by May. Most importantly, walleye pollock egg and adult CPUE was predicted to generally increase throughout the study area as mean annual water temperature increased. These results suggest low interannual variability in the spatial and temporal dynamics of walleye pollock spawning regardless of changes in environmental conditions, at least at the spatial scale examined in this study and within the time frame of decades. Published by Elsevier Ltd.
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| 2. |
- Burd, Adrian B., et al.
(author)
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Assessing the Apparent Imbalance Between Geochemical and Biochemical Indicators of Meso- and Bathypelagic Biological Activity: What the @$#! is wrong with present calculations of carbon budgets?
- 2010
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In: Deep-sea research. Part II, Topical studies in oceanography. - : Elsevier BV. - 0967-0645 .- 1879-0100. ; 57:16, s. 1557-1571
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Journal article (peer-reviewed)abstract
- Metabolic activity in the water column below the euphotic zone is ultimately fuelled by the vertical flux of organic material from the surface. Over time, the deep ocean is presumably at steady state, with sources and sinks balanced. But recently compiled global budgets and intensive local field studies suggest that estimates of metabolic activity in the dark ocean exceed the influx of organic substrates. This imbalance indicates either the existence of unaccounted sources of organic carbon or that metabolic activity in the dark ocean is being over-estimated. Budgets of organic carbon flux and metabolic activity in the dark ocean have uncertainties associated with environmental variability, measurement capabilities, conversion parameters, and processes that are not well sampled. We present these issues and quantify associated uncertainties where possible, using a Monte Carlo analysis of a published data set to determine the probability that the imbalance can be explained purely by uncertainties in measurements and conversion factors. A sensitivity analysis demonstrates that the bacterial growth efficiencies and assumed cell carbon contents have the greatest effects on the magnitude of the carbon imbalance. Two poorly quantified sources, lateral advection of particles and a population of slowly settling particles, are discussed as providing a means of closing regional carbon budgets. Finally, we make recommendations concerning future research directions to reduce important uncertainties and allow a better determination of the magnitude and causes of the unbalanced carbon budgets. (C) 2010 Elsevier Ltd. All rights reserved.
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| 3. |
- Figueroa, Rosa, et al.
(author)
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From homothally to heterothally; mating preferences and genetic variation within clones of the dinoflagellate Gymnodinium catenatum
- 2010
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In: Deep-Sea Research. Part Ii, Topical Studies in Oceanography. - : Elsevier BV. - 0967-0645. ; 57:3-4, s. 190-198
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Journal article (peer-reviewed)abstract
- The chain-forming dinoflagellate Gymnodinium catenatum Graham is responsible for outbreaks of paralytic shellfish poisoning (PSP), a human health threat in coastal waters. Sexuality in this species is of great importance in its bloom dynamics, and has been shown to be very complex but lacks an explanation. For this reason, we tested if unreported homothallic behavior and rapid genetic changes may clarify the sexual system of this alga. To achieve this objective, 12 clonal strains collected from the Spanish coast were analyzed for the presence of sexual reproduction. Mating affinity results, self-compatibility studies, and genetic fingerprinting (amplified fragment length polymorphism, AFLP) analysis on clonal strains, showed three facts not previously described for this species: (i) That there is a continuous mating system within G. catenatum, with either self-compatible strains (homothallic), or strains that needed to be outcrossed (heterothallic), and with a range of differences in cyst production among the crosses. (ii) There was intraclonal genetic variation, i.e. genetic variation within an asexual lineage. Moreover, the variability among homothallic clones was smaller than among the heterothallic ones. (iii) Sibling strains (the two strains established by the germination of one cyst) increased their intra- and inter-sexual compatibility with time. To summarize, we have found that G. catenatum's sexual system is much more complex than previously described, including complex homothallic/heterothallic behaviors. Additionally, high rates of genetic variability may arise in clonal strains, although explanations for the mechanisms responsible are still lacking. (C) 2009 Elsevier Ltd. All rights reserved.
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| 4. |
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| 5. |
- Hennige, S. J., et al.
(author)
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Short-term metabolic and growth responses of the cold-water coral Lophelia pertusa to ocean acidification
- 2014
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In: Deep-sea research. Part II, Topical studies in oceanography. - : Elsevier BV. - 0967-0645 .- 1879-0100. ; 99, s. 27-35
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Journal article (peer-reviewed)abstract
- Cold-water corals are associated with high local biodiversity, but despite their importance as ecosystem engineers, little is known about how these organisms will respond to projected ocean acidification. Since preindustrial times, average ocean pH has decreased from 8.2 to similar to 8.1, and predicted CO2 emissions will decrease by up to another 0.3 pH units by the end of the century. This decrease in pH may have a wide range of impacts upon marine life, and in particular upon calcifiers such as cold-water corals. Lophelia pertusa is the most widespread cold-water coral (CWC) species, frequently found in the North Atlantic. Here, we present the first short-term (21 days) data on the effects of increased CO2 (750 ppm) upon the metabolism of freshly collected L pertusa from Mingulay Reef Complex, Scotland, for comparison with net calcification. Over 21 days, corals exposed to increased CO2 conditions had significantly lower respiration rates (11.4 +/- 1.39 SE, gmol O-2 g(-1) tissue dry weight h(-1)) than corals in control conditions (28.6 +/- 7.30 SE mu mol O-2 g(-1) tissue dry weight h(-1)). There was no corresponding change in calcification rates between treatments, measured using the alkalinity anomaly technique and C-14 uptake. The decrease in respiration rate and maintenance of calcification rate indicates an energetic imbalance, likely facilitated by utilisation of lipid reserves. These data from freshly collected L pertusa from the Mingulay Reef Complex will help define the impact of ocean acidification upon the growth, physiology and structural integrity of this key reef framework forming species.
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| 6. |
- Nagata, Toshi, et al.
(author)
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Emerging concepts on microbial processes in the bathypelagic ocean – ecology, biogeochemistry and genomics
- 2010
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In: Deep-sea research. Part II, Topical studies in oceanography. - : Elsevier BV. - 0967-0645 .- 1879-0100. ; 57:16, s. 1519-1536
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Journal article (peer-reviewed)abstract
- This paper synthesizes recent findings regarding microbial distributions and processes in the bathypelagic ocean (depth > 1000 m). Abundance, production and respiration of prokaryotes reflect supplies of particulate and dissolved organic matter to the bathypelagic zone. Better resolution of carbon fluxes mediated by deep microbes requires further testing on the validity of conversion factors. Archaea, especially marine Crenarchaeota Group I, are abundant in deep waters where they can fix dissolved inorganic carbon. Viruses appear to be important in the microbial loop in deep waters, displaying remarkably high virus to prokaryote abundance ratios in some oceanic regions. Sequencing of 18S rRNA genes revealed a tremendous diversity of small-sized protists in bathypelagic waters. Abundances of heterotrophic nanoflagellates (HNF) and ciliates decrease with depth more steeply than prokaryotes; nonetheless, data indicated that HNF consumed half of prokaryote production in the bathypelagic zone. Aggregates are important habitats for deep-water microbes, which produce more extracellular enzymes (on a per-cell basis) than surface communities. The theory of marine gel formation provides a framework to unravel complex interactions between microbes and organic polymers. Recent data on the effects of hydrostatic pressure on microbial activities indicate that bathypelagic microbial activity is generally higher under in situ pressure conditions than at atmospheric pressures. High-throughput sequencing of 16S rRNA genes revealed a remarkable diversity of Bacteria in the bathypelagic ocean. Metagenomics and comparative genomics of piezophiles reveal not only the high diversity of deep sea microbes but also specific functional attributes of these piezophilic microbes, interpreted as an adaptation to the deep water environment. Taken together, the data compiled on bathypelagic microbes indicate that, despite high-pressure and low-temperature conditions, microbes in the bathypelagic ocean dynamically interact with complex mixtures of organic matter, responding to changes in the ocean's biogeochemical state.
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| 7. |
- Singh, Arvind, et al.
(author)
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Revisiting N-2 fixation in the North Atlantic Ocean: Significance of deviations from the Redfield Ratio, atmospheric deposition and climate variability
- 2013
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In: Deep-Sea Research Part Ii-Topical Studies in Oceanography. - : Elsevier BV. - 0967-0645. ; 93, s. 148-158
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Journal article (peer-reviewed)abstract
- The average oceanic nitrate-to-phosphate molar ratio (NO3-:PO43-approximate to 16:1, referred to as the Redfield Ratio) in subsurface waters, which is similar to the average ratio of particulate nitrogen (N)-to-phosphorus (P) in phytoplankton, is the cornerstone in calculating geochemical estimates of N-2 fixation and denitrification rates. Any deviations from this canonical Redfield Ratio in intermediate ocean waters, expressed as N* (a measure of NO3- in excess or deficit of 16 x PO43-), provides an integrated estimate of net N fluxes into and out of the ocean. In well-oxygenated ocean basins such as the North Atlantic Ocean, N* estimates are usually positive and can be used to infer that rates of N-2 fixation exceed rates of denitrification. We use this approach to estimate N-2 fixation over the last two decades (1988-2009) based on data collected at the Bermuda Atlantic Time-series Study (BATS) site in the North Atlantic Ocean near Bermuda. Our results indicate that interpretation of the N* tracer as an estimate of N-2 fixation should be undertaken with caution, as N-2 fixation is not the only process that results in a positive N* estimate. The impacts of a locally variable nitrogen-to-phosphorus ratio, relative to the fixed Redfield Ratio, in the suspended particulate matter as well as in the subsurface water nutrients and atmospheric N deposition on N* variability were examined. Furthermore, we explored the role of climate modes (i.e., North Atlantic Oscillation and Arctic Oscillation) on N* variability. We found that N* in the subsurface waters was significantly affected by these factors and hence previous estimates of N-2 fixation using this technique might have been substantially overestimated. Our revised estimate of N-2 fixation in the North Atlantic Ocean (0 degrees N-50 degrees N, 20 degrees W-80 degrees W) is 12.2 +/- 0.9 x 10(11) mol N yr(-1), and based on long-term BATS data provides better constraints than both earlier indirect and direct estimates N-2 fixation. (C) 2013 Elsevier Ltd. All rights reserved.
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