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- 2019
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Journal article (peer-reviewed)
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| 2. |
- Hudson, Lawrence N, et al.
(author)
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The database of the PREDICTS (Projecting Responses of Ecological Diversity In Changing Terrestrial Systems) project
- 2017
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In: Ecology and Evolution. - : John Wiley & Sons. - 2045-7758. ; 7:1, s. 145-188
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Journal article (peer-reviewed)abstract
- The PREDICTS project-Projecting Responses of Ecological Diversity In Changing Terrestrial Systems (www.predicts.org.uk)-has collated from published studies a large, reasonably representative database of comparable samples of biodiversity from multiple sites that differ in the nature or intensity of human impacts relating to land use. We have used this evidence base to develop global and regional statistical models of how local biodiversity responds to these measures. We describe and make freely available this 2016 release of the database, containing more than 3.2 million records sampled at over 26,000 locations and representing over 47,000 species. We outline how the database can help in answering a range of questions in ecology and conservation biology. To our knowledge, this is the largest and most geographically and taxonomically representative database of spatial comparisons of biodiversity that has been collated to date; it will be useful to researchers and international efforts wishing to model and understand the global status of biodiversity.
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| 3. |
- Hadfield, James, et al.
(author)
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Comprehensive global genome dynamics of Chlamydia trachomatis show ancient diversification followed by contemporary mixing and recent lineage expansion
- 2017
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In: Genome Research. - : Cold Spring Harbor Laboratory Press. - 1088-9051 .- 1549-5469. ; 27:7, s. 1220-1229
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Journal article (peer-reviewed)abstract
- Chlamydia trachomatis is the world's most prevalent bacterial sexually transmitted infection and leading infectious cause of blindness, yet it is one of the least understood human pathogens, in part due to the difficulties of in vitro culturing and the lack of available tools for genetic manipulation. Genome sequencing has reinvigorated this field, shedding light on the contemporary history of this pathogen. Here, we analyze 563 full genomes, 455 of which are novel, to show that the history of the species comprises two phases, and conclude that the currently circulating lineages are the result of evolution in different genomic ecotypes. Temporal analysis indicates these lineages have recently expanded in the space of thousands of years, rather than the millions of years as previously thought, a finding that dramatically changes our understanding of this pathogen's history. Finally, at a time when almost every pathogen is becoming increasingly resistant to antimicrobials, we show that there is no evidence of circulating genomic resistance in C. trachomatis.
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| 4. |
- Burton, Matthew R., et al.
(author)
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Electrochemically copper-doped bismuth tellurium selenide thin films
- 2018
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In: Electrochemistry communications. - : ELSEVIER SCIENCE INC. - 1388-2481 .- 1873-1902. ; 97, s. 56-59
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Journal article (peer-reviewed)abstract
- We report the first results of a study on electrochemically doped copper bismuth tellurium selenide thin films electrodeposited from aqueous nitric acid electrolytes containing up to 2 mM of Cu(NO3)(2). The effect of Cu (NO3)(2) concentration on the composition, structure and thermoelectric properties of the bismuth tellurium selenide films is investigated by scanning electron microscopy, energy-dispersive X-ray spectroscopy, X-ray diffraction and Seebeck and Hall effect measurements. A Cu(NO3)(2) concentration of 1.5 mM is found to offer a Seebeck coefficient of up to -390 mu V K-1 at room temperature, which is the highest reported to date for an electrodeposited bismuth tellurium compound.
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| 5. |
- Rice, Gillian I, et al.
(author)
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Genetic, Phenotypic, and Interferon Biomarker Status in ADAR1-Related Neurological Disease.
- 2017
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In: Neuropediatrics. - : Georg Thieme Verlag KG. - 1439-1899 .- 0174-304X. ; 48:3, s. 166-184
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Journal article (peer-reviewed)abstract
- We investigated the genetic, phenotypic, and interferon status of 46 patients from 37 families with neurological disease due to mutations in ADAR1. The clinicoradiological phenotype encompassed a spectrum of Aicardi-Goutières syndrome, isolated bilateral striatal necrosis, spastic paraparesis with normal neuroimaging, a progressive spastic dystonic motor disorder, and adult-onset psychological difficulties with intracranial calcification. Homozygous missense mutations were recorded in five families. We observed a p.Pro193Ala variant in the heterozygous state in 22 of 23 families with compound heterozygous mutations. We also ascertained 11 cases from nine families with a p.Gly1007Arg dominant-negative mutation, which occurred de novo in four patients, and was inherited in three families in association with marked phenotypic variability. In 50 of 52 samples from 34 patients, we identified a marked upregulation of type I interferon-stimulated gene transcripts in peripheral blood, with a median interferon score of 16.99 (interquartile range [IQR]: 10.64-25.71) compared with controls (median: 0.93, IQR: 0.57-1.30). Thus, mutations in ADAR1 are associated with a variety of clinically distinct neurological phenotypes presenting from early infancy to adulthood, inherited either as an autosomal recessive or dominant trait. Testing for an interferon signature in blood represents a useful biomarker in this context.
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| 6. |
- Roman, Diana, et al.
(author)
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Mechanisms of Unrest and Eruption at Persistently Restless Volcanoes: Insights From the 2015 Eruption of Telica Volcano, Nicaragua
- 2019
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In: Geochemistry, Geophysics, Geosystems. - 1525-2027. ; 20:8, s. 4162-4183
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Journal article (peer-reviewed)abstract
- Many of Earth's volcanoes experience well-defined states of “quiescence” and “unrest,” with unrest occasionally culminating in eruption. Some volcanoes, however, experience an unusually protracted (i.e., decades-long) period of noneruptive unrest and are thus categorized as “persistently restless volcanoes” (PRVs). The processes that drive persistently restless volcanism are poorly understood, as our knowledge of PRVs is currently based on a small number of case studies. Here we examine multidisciplinary observations of the 2015 eruptive episode at Telica Volcano, Nicaragua, in the context of its long-term behavior. We suggest that the latter phases of the 2015 eruption were ultimately driven by destabilization of its shallow magma reservoir. Based on previous geodetic-seismic studies of Telica (Geirsson et al., 2014, https://doi.org/10.1016/j.jvolgeores.2013.11.009; Rodgers et al., 2013, https://doi.org/10.1016/j.jvolgeores.2013.08.010 and 2015, https://doi.org/10.1016/j.jvolgeores.2014.11.012) and on multiparameter observations at Telica over a 7-year period, we propose that three distinct states of unrest occur at Telica over decadal timescales: a stable open state involving steady conduit convection and two distinct “unstable” states that may lead to eruptions. In the “weak sealing” state, phreatic explosions result from steady conduit convection underlying a weak seal. In the “destabilized” state, destabilization of the top of the convecting magma in the conduit leads to rapid accumulation of high pressures leading to strong/impulsive phreatomagmatic explosions. Our observations and interpretations suggest that continuous seismic, ground-based deformation, gas emission, and thermal monitoring and interpretation of these data within a paradigm of sustained conduit convection modulated by episodes of sealing and destabilization of shallow magma reservoirs may allow robust forecasting of eruption potential, energy, and duration at Telica and similar PRVs worldwide.
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