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- Hendriks, Kasper P., et al.
(author)
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Global Brassicaceae phylogeny based on filtering of 1,000-gene dataset
- 2023
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In: Current Biology. - : Elsevier. - 0960-9822 .- 1879-0445. ; 33:19, s. 4052-4068
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Journal article (peer-reviewed)abstract
- The mustard family (Brassicaceae) is a scientifically and economically important family, containing the model plant Arabidopsis thaliana and numerous crop species that feed billions worldwide. Despite its relevance, most phylogenetic trees of the family are incompletely sampled and often contain poorly supported branches. Here, we present the most complete Brassicaceae genus-level family phylogenies to date (Bras-sicaceae Tree of Life or BrassiToL) based on nuclear (1,081 genes, 319 of the 349 genera; 57 of the 58 tribes) and plastome (60 genes, 265 genera; all tribes) data. We found cytonuclear discordance between the two, which is likely a result of rampant hybridization among closely and more distantly related lineages. To eval-uate the impact of such hybridization on the nuclear phylogeny reconstruction, we performed five different gene sampling routines, which increasingly removed putatively paralog genes. Our cleaned subset of 297 genes revealed high support for the tribes, whereas support for the main lineages (supertribes) was moder-ate. Calibration based on the 20 most clock-like nuclear genes suggests a late Eocene to late Oligocene origin of the family. Finally, our results strongly support a recently published new family classification, dividing the family into two subfamilies (one with five supertribes), together representing 58 tribes. This includes five recently described or re-established tribes, including Arabidopsideae, a monogeneric tribe accommodating Arabidopsis without any close relatives. With a worldwide community of thousands of researchers working on Brassicaceae and its diverse members, our new genus-level family phylogeny will be an indispensable tool for studies on biodiversity and plant biology.
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| 2. |
- Lysak, R., et al.
(author)
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Quiet, Discrete Auroral Arcs : Acceleration Mechanisms
- 2020
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In: Space Science Reviews. - : Springer Nature. - 0038-6308 .- 1572-9672. ; 216:5
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Journal article (peer-reviewed)abstract
- The theory of the acceleration of auroral particles is reviewed, focusing on developments in the last 15 years. We discuss elementary plasma physics processes leading to acceleration of electrons to energies compatible with emission observed for quiet, discrete auroral arcs, defined as arcs that have time scales of minutes or more and spatial scales ranging from less than 1 km to tens of kilometers. For context, earlier observations are first described briefly. The theoretical fundamentals of auroral particle acceleration are based on the kinetic theory of plasmas, in particular the development of parallel electric fields. These parallel electric fields can either be distributed along the magnetic field lines, often associated with the mirror geometry of the geomagnetic field, or concentrated into narrow regions of charge separation known as double layers. Observations have indicated that the acceleration process depends on whether the field-aligned currents are directed away from the Earth, toward the Earth, or in mixed regions of currents often associated with the propagation of Alfvén waves. Recent observations from the NASA Fast Auroral SnapshoT (FAST) satellite, the ESA satellite constellation Cluster, and the Japanese Reimei satellite have provided new insights into the auroral acceleration process and have led to further refinements to the theory of auroral particle acceleration.
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