| 1. |
- Abbafati, Cristiana, et al.
(author)
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- 2020
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Journal article (peer-reviewed)
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| 2. |
- Kumar Awasthi, Mukesh, et al.
(author)
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Recent trends and developments on integrated biochemical conversion process for valorization of dairy waste to value added bioproducts: A review
- 2022
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In: Bioresource Technology. - : Elsevier BV. - 0960-8524 .- 1873-2976. ; 344
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Research review (peer-reviewed)abstract
- In this review article, discuss the many ways utilized by the dairy sector to treat pollutants, emphasizing their influence on the quality and efficiency with which contamination is removed. It focuses on biotechnology possibilities for valorizing dairy waste in particular. The findings revealed that dairy waste may be treated using physicochemical, biological, and biotechnological techniques. Notably, this article highlighted the possibility of dairy waste being used as a feedstock not only for the generation of biogas, bioethanol, biohydrogen, microbial fuel cells, lactic acid, and fumaric acid via microbial technology but also for the production of biooil and biochar by pyrolysis. In addition, this article critically evaluates the many treatment techniques available for recovering energy and materials from dairy waste, their combinations, and implementation prospects. Valorization of dairy waste streams presents an opportunity to extend the dairy industry's presence in the fermented functional beverage sector.
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| 3. |
- Kumar, Deepak, et al.
(author)
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Multi-ahead electrical conductivity forecasting of surface water based on machine learning algorithms
- 2023
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In: Applied water science. - : Springer Nature. - 2190-5487 .- 2190-5495. ; 13:10
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Journal article (peer-reviewed)abstract
- The present research work focused on predicting the electrical conductivity (EC) of surface water in the Upper Ganga basin using four machine learning algorithms: multilayer perceptron (MLP), co-adaptive neuro-fuzzy inference system (CANFIS), random forest (RF), and decision tree (DT). The study also utilized the gamma test for selecting appropriate input and output combinations. The results of the gamma test revealed that total hardness (TH), magnesium (Mg), and chloride (Cl) parameters were suitable input variables for EC prediction. The performance of the models was evaluated using statistical indices such as Percent Bias (PBIAS), correlation coefficient (R), Willmott’s index of agreement (WI), Index of Agreement (PI), root mean square error (RMSE) and Legate-McCabe Index (LMI). Comparing the results of the EC models using these statistical indices, it was observed that the RF model outperformed the other algorithms. During the training period, the RF algorithm has a small positive bias (PBIAS = 0.11) and achieves a high correlation with the observed values (R = 0.956). Additionally, it shows a low RMSE value (360.42), a relatively good coefficient of efficiency (CE = 0.932), PI (0.083), WI (0.908) and LMI (0.083). However, during the testing period, the algorithm’s performance shows a small negative bias (PBIAS = − 0.46) and a good correlation (R = 0.929). The RMSE value decreases significantly (26.57), indicating better accuracy, the coefficient of efficiency remains high (CE = 0.915), PI (0.033), WI (0.965) and LMI (− 0.028). Similarly, the performance of the RF algorithm during the training and testing periods in Prayagraj. During the training period, the RF algorithm shows a PBIAS of 0.50, indicating a small positive bias. It achieves an RMSE of 368.3, R of 0.909, CE of 0.872, PI of 0.015, WI of 0.921, and LMI of 0.083. During the testing period, the RF algorithm demonstrates a slight negative bias with a PBIAS of − 0.06. The RMSE reduces significantly to 24.1, indicating improved accuracy. The algorithm maintains a high correlation (R = 0.903) and a good coefficient of efficiency (CE = 0.878). The index of agreement (PI) increases to 0.035, suggesting a better fit. The WI is 0.960, indicating high accuracy compared to the mean value, while the LMI decreases slightly to − 0.038. Based on the comparative results of the machine learning algorithms, it was concluded that RF performed better than DT, CANFIS, and MLP. The study recommended using the current month’s total hardness (TH), magnesium (Mg), and chloride (Cl) parameters as input variables for multi-ahead forecasting of electrical conductivity (ECt+1, ECt+2, and ECt+3) in future studies in the Upper Ganga basin. The findings also indicated that RF and DT models had superior performance compared to MLP and CANFIS models. These models can be applied for multi-ahead forecasting of monthly electrical conductivity at both Varanasi and Prayagraj stations in the Upper Ganga basin.
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| 4. |
- Mehta, Meenu, et al.
(author)
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Recent trends of NFkB decoy oligodeoxynucleotide-based nanotherapeutics in lung diseases
- 2021
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In: Journal of Controlled Release. - : Elsevier. - 0168-3659 .- 1873-4995. ; 337, s. 629-644
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Research review (peer-reviewed)abstract
- Nuclear factor Kappa B (NFicB) is a unique protein complex that plays a major role in lung inflammation and respi-ratory dysfunction. The NFicB signaling pathway, therefore becomes an avenue for the development of potential pharmacological interventions, especially in situations where chronic inflammation is often constitutively active and plays a key role in the pathogenesis and progression of the disease. NFicB decoy oligodeoxynucleotides (ODNs) are double-stranded and carry NFicB binding sequences. They prevent the formation of NFicB-mediated inflammatory cytokines and thus have been employed in the treatment of a variety of chronic inflammatory diseases. However, the systemic administration of naked decoy ODNs restricts their therapeutic effectiveness because of their poor pharmacokinetic profile, instability, degradation by cellular enzymes and their low cellular uptake. Both structural modification and nanotechnology have shown promising results in enhancing the pharmacokinetic profiles of potent therapeutic substances and have also shown great potential in the treatment of respiratory diseases such as asthma, chronic obstructive pulmonary disease and cystic fibrosis. In this review, we examine the contribution of NFicB activation in respiratory diseases and recent advancements in the thera-peutic use of decoy ODNs. In addition, we also highlight the limitations and challenges in use of decoy ODNs as therapeutic molecules, cellular uptake of decoy ODNs, and the current need for novel delivery systems to provide efficient delivery of decoy ODNs. Furthermore, this review provides a common platform for discussion on the existence of decoy ODNs, as well as outlining perspectives on the latest generation of delivery systems that encapsulate decoy ODNs and target NFxB in respiratory diseases.
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| 5. |
- Mukesh Kumar, Awasthi, et al.
(author)
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Myco-biorefinery approaches for food waste valorization : Present status and future prospects
- 2022
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In: Bioresource Technology. - : Elsevier. - 0960-8524 .- 1873-2976. ; 360
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Journal article (peer-reviewed)abstract
- Increases in population and urbanization leads to generation of a large amount of food waste (FW) and its effective waste management is a major concern. But putrescible nature and high moisture content is a major limiting factor for cost effective FW valorization. Bioconversion of FW for the production of value added products is an eco-friendly and economically viable strategy for addressing these issues. Targeting on production of multiple products will solve these issues to greater extent. This article provides an overview of bioconversion of FW to different value added products.
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| 6. |
- Gururani, Dheeraj Mohan, et al.
(author)
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Mapping Prospects for Artificial Groundwater Recharge Utilizing Remote Sensing and GIS Methods
- 2023
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In: Water. - : MDPI. - 2073-4441. ; 15:22
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Journal article (peer-reviewed)abstract
- The indiscriminate use of groundwater and its overexploitation has led to a significant decline in groundwater resources in India, making it essential to identify potential recharge zones for aquifer recharge. A study was conducted to determine such potential recharge zones in the Nandhour-Kailash River watershed. The study area included 1481 streams divided into 12 sub-basins (SWS). The results show that the downstream Saraunj sub-basins (SWS-11) and Odra sub-basins (SWS-12) were high priority and required immediate soil and water conservation attention. Sub catchments Lobchla West (SWS-4), Deotar (SWS-5), Balot South (SWS-8), Nandhour (SWS-9), and Nakoliy (SWS-10) had medium priority and were designated for moderate soil erosion and degradation. In contrast, sub-catchments Aligad (SWS-1), Kundal (SWS-2), Lowarnala North (SWS-3), Bhalseni (SWS-6), and Uparla Gauniyarao (SWS-7) had low priority, indicating a low risk of soil erosion and degradation. Using the existing groundwater level data, the potential map of groundwater was validated to confirm its validity. According to the guidelines provided by the Integrated Mission for Sustainable Development (IMSD), the results of the groundwater potential zones for good to very good zones have been integrated at the slope and stream order. In a 120.94 km2 area with a slope of 0–5% in first-order streams, 36 ponds were proposed, and in a 218.03 km2 area with a slope of 15% in first- to fourth-order streams, 105 retention dams were proposed and recognized as possible sites for artificial groundwater recharge. The proposed water harvesting structure may aid in continuously recharging these zones and benefit water resource managers and planners. Thus, various governmental organizations can use the results to identify possible future recharge areas.
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| 7. |
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| 8. |
- Kumar, Vinod, et al.
(author)
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Bread waste : A potential feedstock for sustainable circular biorefineries
- 2023
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In: Bioresource Technology. - : Elsevier BV. - 0960-8524 .- 1873-2976. ; 369
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Research review (peer-reviewed)abstract
- The management of staggering volume of food waste generated (∼1.3 billion tons) is a serious challenge. The readily available untapped food waste can be promising feedstock for setting up biorefineries and one good example is bread waste (BW). The current review emphasis on capability of BW as feedstock for sustainable production of platform and commercially important chemicals. It describes the availability of BW (>100 million tons) to serve as a feedstock for sustainable biorefineries followed by examples of platform chemicals which have been produced using BW including ethanol, lactic acid, succinic acid and 2,3-butanediol through biological route. The BW-based production of these metabolites is compared against 1G and 2G (lignocellulosic biomass) feedstocks. The review also discusses logistic and supply chain challenges associated with use of BW as feedstock. Towards the end, it is concluded with a discussion on life cycle analysis of BW-based production and comparison with other feedstocks.
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| 9. |
- Mukesh Kumar, Awasthi, et al.
(author)
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Agricultural waste biorefinery development towards circular bioeconomy
- 2022
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In: Renewable & sustainable energy reviews. - : Elsevier. - 1364-0321 .- 1879-0690. ; 158
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Journal article (peer-reviewed)abstract
- The concept of biorefinery depends on the recuperation of higher-value chemicals with potential for a wide dissemination and an untapped marketability. To construct a clearer picture of rural waste treatment system, this work was conducted to critically review the foremost regularly utilized agricultural waste management technologies from their state of the art, challenges for setting up the biorefinery and system of circular economy with self-efficient business model. The drivers that can make the biorefinery concept appropriate to waste management and the conceivable outcomes for its improvement to full scale were examined. Technological, strategic and market imperatives influence the effective usage of these frameworks. This review discusses the state-of-the-art biorefinery opportunities beyond conventional strategies as an economically viable solution to overcome numerous current challenges such as waste minimization and the biosynthesis of different high-value bioproducts biorefinery strategies, integrated approach as well as economic and environmental impact were discussed.
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| 10. |
- Jacob, Mina A, et al.
(author)
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Global Differences in Risk Factors, Etiology, and Outcome of Ischemic Stroke in Young Adults: A Worldwide Meta-analysis: The GOAL-Initiative.
- 2022
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In: Neurology. - 1526-632X. ; 98:6
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Journal article (peer-reviewed)abstract
- There is a worldwide increase in the incidence of stroke in young adults, with major regional and ethnic differences. Advancing knowledge of ethnic and regional variation in causes and outcomes will be beneficial in implementation of regional healthcare services. To study the global distribution of risk factors, causes and 3-month mortality of young ischemic stroke patients, by performing a patient data meta-analysis form different cohorts worldwide.We did a pooled analysis of individual patient data from cohort studies which included consecutive ischemic stroke patients aged 18-50 years. We studied differences in prevalence of risk factors and causes between different ethnic and racial groups, geographic regions and countries with different income levels. We investigated differences in 3-month mortality by mixed-effects multivariable logistic regression.We included 17,663 patients from 32 cohorts in 29 countries. Hypertension and diabetes were most prevalent in Blacks (hypertension, 52.1%; diabetes, 20.7%) and Asians (hypertension 46.1%, diabetes, 20.9%). Large vessel atherosclerosis and small vessel disease were more often cause of stroke in high-income countries (HICs; both p<0.001), whereas ''other determined stroke'' and ''undetermined stroke'' were higher in low and middle-income countries (LMICs; both p<0.001). Patients in LMICs were younger, had less vascular risk factors, and despite this, more often died within 3 months than those from HICs (OR 2.49; 95% CI 1.42-4.36).The ethnoracial and regional differences in risk factors and causes of stroke at young age provide an understanding of ethnic and racial, and regional differences in incidence of ischemic stroke. Our results also visualize the dissimilarities in outcome after stroke in young adults that exist between LMICs and HICs, which should serve as call to action to improve healthcare facilities in LMICs.
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| 11. |
- Belachew, Kassa, et al.
(author)
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Conversion of Mn2+ into Mn3+ in manganese ions doped KF-CaO-B2O3 glasses : Electrical and spectroscopic properties
- 2022
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In: Physica. B, Condensed matter. - : Elsevier BV. - 0921-4526 .- 1873-2135. ; 645, s. 414225-
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Journal article (peer-reviewed)abstract
- Melt quenching technique is used to prepare the glasses composition (KF-CaO-B2O3) with different concentration of manganese oxide in the range of 0.1-0.4 wt %. Nature of the fabricated glasses is confirmed by X-ray diffraction analysis. All calculated stability factors from differential thermal analysis increases with increasing the content of MnO. Infrared spectral analysis provided the information that those glass samples exhibited some symmetrical as well as asymmetrical bands belong to the borate group. The absorption results show a shifting in the absorption band, which is corresponding to the exchange of Mn2+ into the Mn3+ ions. Electron paramagnetic resonance results are shown two signals, which is characterized by Mn2+ and Mn3+. The variation in the intensity of these signals is discovered an improvement into glass stability with increased MnO content. The dielectric analyses is presented with different parameters with the variation of frequency from 103 Hz to 105 Hz and temperature 20 ?-400 ?.
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| 12. |
- Elliott, Kerryn, et al.
(author)
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Base-resolution UV footprinting by sequencing reveals distinctive damage signatures for DNA-binding proteins
- 2023
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In: Nature Communications. ; 14:1
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Journal article (peer-reviewed)abstract
- Decades ago, it was shown that proteins binding to DNA can quantitatively alter the formation of DNA damage by UV light. This established the principle of UV footprinting for non-intrusive study of protein-DNA contacts in living cells, albeit at limited scale and precision. Here, we perform deep base-resolution quantification of the principal UV damage lesion, the cyclobutane pyrimidine dimer (CPD), at select human promoter regions using targeted CPD sequencing. Several transcription factors exhibited distinctive and repeatable damage signatures indicative of site occupancy, involving strong (up to 17-fold) position-specific elevations and reductions in CPD formation frequency relative to naked DNA. Positive damage modulation at some ETS transcription factor binding sites coincided at base level with melanoma somatic mutation hotspots. Our work provides proof of concept for the study of protein-DNA interactions at individual loci using light and sequencing, and reveals widespread and potent modulation of UV damage in regulatory regions. Proteins binding to DNA can locally alter DNA damage formation by UV light. Here, Elliott et al. generate high-resolution quantitative UV damage profiles for genomic regions of interest, revealing distinctive damage signatures for specific proteins and elevated UV damage at melanoma mutation hotspots.
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| 13. |
- Gour, Priyanka, et al.
(author)
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Experience of Elderly People Regarding the Effect of Yoga/Light Exercise on Sedentary Behavior : A Longitudinal Qualitative Study in Madhya Pradesh, India
- 2020
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In: Geriatrics. - : MDPI. - 2308-3417. ; 5:4
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Journal article (peer-reviewed)abstract
- This study is set on the background of a randomized control trial (RCT) in which intervention was carried to observe the effects of yoga/light exercise on the improvement in health and well-being among the elderly population. A longitudinal qualitative study was conducted as part of RCT interventions to explore the experience of the elderly practicing yoga/light exercise in relation to sedentary behavior in the Ujjain district of Madhya Pradesh, India. Participants of the RCT were selected for this study. Eighteen focus group discussions were conducted-six during each phase of RCT interventions (before, during, and after). The findings regarding motivating and demotivating factors in various phases of intervention were presented in three categories: experience and perception of the effects of yoga/light exercise on sedentary behavior (1) before, (2) during, and (3) after intervention. This study explores the positive effect of yoga/light exercise on sedentary behavior and subjective well-being on the elderly population. They were recognized to have undergone changes in their physical and emotional well-being by consistently practicing yoga/light exercise. The main driving factors were periodic health check-ups and the encouragement of qualified trainers without any cost. This study concludes with the notion that these interventions should be encouraged in the community to use physical exercise as a method to better control the physical and social effects of aging.
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| 14. |
- Ravikumar, Sadhana, et al.
(author)
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Unfolding the Medial Temporal Lobe Cortex to Characterize Neurodegeneration Due to Alzheimer’s Disease Pathology Using Ex vivo Imaging
- 2021
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In: Machine Learning in Clinical Neuroimaging - 4th International Workshop, MLCN 2021, Held in Conjunction with MICCAI 2021, Proceedings. - Cham : Springer International Publishing. - 0302-9743 .- 1611-3349. - 9783030875855 ; 13001 LNCS, s. 3-12
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Conference paper (peer-reviewed)abstract
- Neurofibrillary tangle (NFT) pathology in the medial temporal lobe (MTL) is closely linked to neurodegeneration, and is the early pathological change associated with Alzheimer’s Disease (AD). In this work, we investigate the relationship between MTL morphometry features derived from high-resolution ex vivo imaging and histology-based measures of NFT pathology using a topological unfolding framework applied to a dataset of 18 human postmortem MTL specimens. The MTL has a complex 3D topography and exhibits a high degree of inter-subject variability in cortical folding patterns which poses a significant challenge for volumetric registration methods typically used during MRI template construction. By unfolding the MTL cortex, the proposed framework explicitly accounts for the sheet-like geometry of the MTL cortex and provides a two-dimensional reference coordinate space which can be used to implicitly register cortical folding patterns across specimens based on distance along the cortex despite large anatomical variability. Leveraging this framework in a subset of 15 specimens, we characterize the associations between NFTs and morphological features such as cortical thickness and surface curvature and identify regions in the MTL where patterns of atrophy are strongly correlated with NFT pathology.
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| 15. |
- Sengodan, Satheesh K., et al.
(author)
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Mismatch repair protein MLH1 suppresses replicative stress in BRCA2-deficient breast tumors
- 2024
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In: JOURNAL OF CLINICAL INVESTIGATION. - 0021-9738 .- 1558-8238. ; 134:7
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Journal article (peer-reviewed)abstract
- Loss of BRCA2 (breast cancer 2) is lethal for normal cells. Yet it remains poorly understood how, in BRCA2 mutation carriers, cells undergoing loss of heterozygosity overcome the lethality and undergo tissue -specific neoplastic transformation. Here, we identified mismatch repair gene mutL homolog 1 (MLH1) as a genetic interactor of BRCA2 whose overexpression supports the viability of Brca2-null cells. Mechanistically, we showed that MLH1 interacts with Flap endonuclease 1 (FEN1) and competes to process the RNA flaps of Okazaki fragments. Together, they restrained the DNA2 nuclease activity on the reversed forks of lagging strands, leading to replication fork (RF) stability in BRCA2-deficient cells. In these cells, MLH1 also attenuated R -loops, allowing the progression of stable RFs, which suppressed genomic instability and supported cell viability. We demonstrated the significance of their genetic interaction by the lethality of Brca2-mutant mice and inhibition of Brca2-deficient tumor growth in mice by Mlh1 loss. Furthermore, we described estrogen as inducing MLH1 expression through estrogen receptor alpha (ER alpha), which might explain why the majority of BRCA2 mutation carriers develop ER -positive breast cancer. Taken together, our findings reveal a role of MLH1 in relieving replicative stress and show how it may contribute to the establishment of BRCA2-deficient breast tumors.
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| 16. |
- Torkashvand, Kaveh, 1990-, et al.
(author)
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Influence of Test Conditions on Sliding Wear Performance of High Velocity Air Fuel-Sprayed WC–CoCr Coatings
- 2021
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In: Materials. - Basel : MDPI. - 1996-1944. ; 14:11
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Journal article (peer-reviewed)abstract
- Sliding wear performance of thermal spray WC-based coatings has been widely studied. However, there is no systematic investigation on the influence of test conditions on wear behaviour of these coatings. In order to have a good understanding of the effect of test parameters on sliding wear test performance of HVAF-sprayed WC–CoCr coatings, ball-on-disc tests were conducted under varying test conditions, including different angular velocities, loads and sliding distances. Under normal load of 20 N and sliding distance of 5 km (used as ‘reference’ conditions), it was shown that, despite changes in angular velocity (from 1333 rpm up to 2400 rpm), specific wear rate values experienced no major variation. No major change was observed in specific wear rate values even upon increasing the load from 20 N to 40 N and sliding distance from 5 km to 10 km, and no significant change was noted in the prevailing wear mechanism, either. Results suggest that no dramatic changes in applicable wear regime occur over the window of test parameters investigated. Consequently, the findings of this study inspire confidence in utilizing test conditions within the above range to rank different WC-based coatings.
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| 17. |
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| 18. |
- Zhao, Xiaodan, et al.
(author)
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Exploring TRF2-dependent dna distortion through single-DNA manipulation studies
- 2024
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In: Communications Biology. - : Springer Nature. - 2399-3642. ; 7:1
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Journal article (peer-reviewed)abstract
- TRF2 is a component of shelterin, a telomere-specific protein complex that protects the ends of mammalian chromosomes from DNA damage signaling and improper repair. TRF2 functions as a homodimer and its interaction with telomeric DNA has been studied, but its full-length DNA-binding properties are unknown. This study examines TRF2’s interaction with single-DNA strands and focuses on the conformation of the TRF2-DNA complex and TRF2’s preference for DNA chirality. The results show that TRF2-DNA can switch between extended and compact conformations, indicating multiple DNA-binding modes, and TRF2’s binding does not have a strong preference for DNA supercoiling chirality when DNA is under low tension. Instead, TRF2 induces DNA bending under tension. Furthermore, both the N-terminal domain of TRF2 and the Myb domain enhance its affinity for the telomere sequence, highlighting the crucial role of multivalent DNA binding in enhancing its affinity and specificity for telomere sequence. These discoveries offer unique insights into TRF2’s interaction with telomeric DNA.
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