| 1. |
- Adcox, K, et al.
(author)
-
PHENIX detector overview
- 2003
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In: Nuclear Instruments & Methods in Physics Research. Section A: Accelerators, Spectrometers, Detectors, and Associated Equipment. - 0167-5087. ; 499:2-3, s. 469-479
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Journal article (peer-reviewed)abstract
- The PHENIX detector is designed to perform a broad study of A-A, p-A, and p-p collisions to investigate nuclear matter under extreme conditions. A wide variety of probes, sensitive to all timescales, are used to study systematic variations with species and energy as well as to measure the spin structure of the nucleon. Designing for the needs of the heavy-ion and polarized-proton programs has produced a detector with unparalleled capabilities. PHENIX measures electron and muon pairs, photons, and hadrons with excellent energy and momentum resolution. The detector consists of a large number of subsystems that are discussed in other papers in this volume. The overall design parameters of the detector are presented. (C) 2002 Elsevier Science B.V. All rights reserved.
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| 2. |
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| 3. |
- Harmens, H, et al.
(author)
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Heavy metal concentrations in European mosses: 2000/2001 survey
- 2004
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In: Journal of Atmospheric Chemistry. - : Springer Science and Business Media LLC. - 0167-7764 .- 1573-0662. ; 49:1-3, s. 425-436
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Journal article (peer-reviewed)abstract
- The heavy metals in mosses survey was originally established in 1980 as a joint Danish-Swedish initiative under the leadership of Angstromke Ruhling, Sweden and has, since then, been repeated at five-yearly intervals with an increasing number of countries and individuals participating. Twenty-eight European countries, almost 7000 sites and about 100 individuals have been involved in the most recent survey in 2000/2001. The survey provides data on concentrations of 10 heavy metals (arsenic, cadmium, chromium, copper, iron, lead, mercury, nickel, vanadium, zinc) in naturally growing mosses throughout Europe. The technique of moss analysis provides a surrogate measure of the spatial patterns of heavy metal deposition from the atmosphere to terrestrial systems, and is easier and cheaper than conventional precipitation analysis. The aims of the survey are to determine patterns of variation in the heavy metal concentration of mosses across Europe, identify the main polluted areas, produce regional maps and further develop the understanding of long-range transboundary pollution. As in previous surveys, there was an east/west decrease in heavy metal concentrations in mosses, related in particular to industrial emissions. Former industrial sites and historic mines accounted for the location of some high concentrations in areas without contemporary industries. Long-range transboundary transport appears to account for elevated concentrations of heavy metals in areas without emission sources, such as lead in southern Scandinavia (presumably from emission sources elsewhere in Europe).
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| 4. |
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| 5. |
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| 6. |
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| 7. |
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| 8. |
- Williams, N M, et al.
(author)
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A systematic genomewide linkage study in 353 sib pairs with schizophrenia.
- 2003
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In: American Journal of Human Genetics. - : Elsevier BV. - 0002-9297 .- 1537-6605. ; 73:6, s. 1355-1367
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Journal article (peer-reviewed)abstract
- We undertook a genomewide linkage study in a total of 353 affected sib pairs (ASPs) with schizophrenia. Our sample consisted of 179 ASPs from the United Kingdom, 134 from Sweden, and 40 from the United States. We typed 372 microsatellite markers at approximately 10-cM intervals. Our strongest finding was a LOD score of 3.87 on chromosome 10q25.3-q26.3, with positive results being contributed by all three samples and a LOD-1 interval of 15 cM. This finding achieved genomewide significance (P<.05), on the basis of simulation studies. We also found two regions, 17p11.2-q25.1 (maximum LOD score [MLS] = 3.35) and 22q11 (MLS = 2.29), in which the evidence for linkage was highly suggestive. Linkage to all of these regions has been supported by other studies. Moreover, we found strong evidence for linkage (genomewide P<.02) to 17p11.2-q25.1 in a single pedigree with schizophrenia. In our view, the evidence is now sufficiently compelling to undertake detailed mapping studies of these three regions.
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| 9. |
- Williams, P., et al.
(author)
-
Quorum sensing and the population-dependent control of virulence
- 2000
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In: Philosophical Transactions of the Royal Society of London. Biological Sciences. - : The Royal Society. - 0962-8436 .- 1471-2970. ; 355:1397, s. 667-680
-
Research review (peer-reviewed)abstract
- One crucial feature of almost all bacterial infections is the need for the invading pathogen to reach a critical cell population density sufficient to overcome host defences and establish the infection. Controlling the expression of virulence determinants in concert with cell population density may therefore confer a significant survival advantage on the pathogen such that the host is overwhelmed before a defence response can be fully initiated. Many different bacterial pathogens are now known to regulate diverse physiological processes including virulence in a cell-density-dependent manner through cell-cell communication. This phenomenon, which relies on the interaction of a diffusible signal molecule (e.g. an N-acylhomoserine lactone) with a sensor or transcriptional activator to couple gene expression with cell population density, has become known as 'quorum sensing'. Although the size of the 'quorum' is likely to be highly variable and influenced by the diffusibility of the signal molecule within infected tissues, nevertheless quorum-sensing signal molecules can be detected in vivo in both experimental animal model and human infections. Furthermore, certain quorum-sensing molecules have been shown to possess pharmacological and immunomodulatory activity such that they may function as virulence determinants per se. As a consequence, quorum sensing constitutes a novel therapeutic target for the design of small molecular antagonists capable of attenuating virulence through the blockade of bacterial cell-cell communication.
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| 10. |
- Åkesson, Torsten, et al.
(author)
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An X-ray scanner for wire chambers
- 2003
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In: Nuclear Instruments & Methods in Physics Research. Section A: Accelerators, Spectrometers, Detectors, and Associated Equipment. - 0167-5087. ; 507:3, s. 622-635
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Journal article (peer-reviewed)abstract
- The techniques to measure the position of sense wires and field wires, the gas gain and the gas flow rate inside wire chambers using a collimated and filtered X-ray beam are reported. Specific examples are given using barrel modules of the Transition Radiation Tracker of the ATLAS experiment. (C) 2003 Elsevier B.V. All rights reserved.
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| 11. |
- Åkesson, Torsten, et al.
(author)
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ATLAS Transition Radiation Tracker test-beam results
- 2004
-
In: Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment. - : Elsevier BV. - 0168-9002. ; 522:1-2, s. 50-55
-
Conference paper (peer-reviewed)abstract
- Several prototypes of the Transition Radiation Tracker for the ATLAS experiment at the LHC have been built and tested at the CERN SPS accelerator. Results from detailed studies of the straw-tube hit registration efficiency and drift-time measurements and of the pion and electron spectra without and with radiators are presented.
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| 12. |
- Åkesson, Torsten, et al.
(author)
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Status of design and construction of the Transition Radiation Tracker (TRT) for the ATLAS experiment at the LHC
- 2004
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In: Nuclear Instruments & Methods in Physics Research. Section A: Accelerators, Spectrometers, Detectors, and Associated Equipment. - : Elsevier BV. - 0167-5087 .- 0168-9002. ; 522:1-2, s. 131-145
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Journal article (peer-reviewed)abstract
- The ATLAS Inner Detector consists of three sub-systems, the Pixel Detector at the innermost radius, the Semi-Conductor Tracker at intermediate radii, and the Transition Radiation Tracker (TRT) at the outermost radius in front of the electromagnetic calorimeter. The TRT provides a combination of continuous tracking with many projective measurements based on individual drift-tubes (or straws) and of electron identification based on radiator fibres or foils interleaved between the straws themselves. This paper describes the current status of design and construction of the various components of the TRT: the assembly of the barrel modules has recently been completed, that of the end-cap wheels is well underway, and the on-detector front-end electronics is in production. The detector modules and front-end electronics boards will be integrated together over the next year, the barrel and end-cap TRT parts will be assembled and tested with their SCT counterparts during 2005 and installation and commissioning in the ATLAS pit will take place at the end of 2005 and the beginning of 2006. (C) 2004 Elsevier B.V. All rights reserved.
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| 13. |
- Baum, C, et al.
(author)
-
Chance or necessity? Insertional mutagenesis in gene therapy and its consequences
- 2004
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In: Molecular Therapy. - : Elsevier BV. - 1525-0024 .- 1525-0016. ; 9:1, s. 5-13
-
Research review (peer-reviewed)abstract
- Recently, unusual forms of leukemias have developed as complications following retroviral transfer of potentially therapeutic genes into hematopoietic cells. A crucial component in the pathogenesis of these complications was the upregulation of a cellular proto-oncogene by random insertion of the retroviral gene transfer vector. These findings have great implications for the genetic manipulation of somatic stem cells in medicine. This review discusses the extent to which the random oncogene activation may have required disease-specific stimuli of the transgene and the hematopoietic milieu to become leukemogenic. Based on these considerations, we propose approaches to risk prediction and prevention.
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| 14. |
- Boström, Mathias, et al.
(author)
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Specific ion effects : The role of co-ions in biology
- 2003
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In: Europhysics letters. - : IOP Publishing. - 0295-5075 .- 1286-4854. ; 63:4, s. 610-615
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Journal article (peer-reviewed)abstract
- Co-ions are as essential in biological systems as they are ignored. The purpose of this letter is to demonstrate the importance of including ionic dispersion potentials acting between ions and interfaces in any realistic theoretical modeling of biological systems. We demonstrate through a well-known biological example that co-ion effects can be understood once these previously ignored forces are included. Experiments have in the past revealed that addition of salt solutions with different co-ions give fundamentally different results for the formation of meta 2 rhodopsin (which is involved in dim light vision). For systems with low salt concentrations, addition of salt favors the formation of meta 1 rhodopsin. Exactly the opposite is observed in high-concentration salt solutions. This is true even after surface pH. effects have been screened out with the addition of 0.5 M sodium acetate buffer. A theoretical explanation for the role of co-ions behind this effect is here given in terms of ionic dispersion potentials and ion specific surface pH.
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| 15. |
- Boström, Mathias, et al.
(author)
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Specific ion effects : Role of salt and buffer in protonation of cytochrome c
- 2004
-
In: The European Physical Journal E Soft matter. - : Springer Science and Business Media LLC. - 1292-8941 .- 1292-895X. ; 13:3, s. 239-245
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Journal article (peer-reviewed)abstract
- Changes in background salt and buffer are known to influence the properties of proteins. The reasons have remained obscure. The challenge posed by many such problems is this. Can physical chemistry contribute any predictive quantitative insights to what is in effect the simplest macromolecular solution behavior? Or must all remain specific? Our thesis is that it can. For definiteness we consider here as an illustrative example: surface pH and protonation equilibria of cytochrome c. We demonstrate an important role for ionic dispersion forces, missing from previous theoretical treatments. Unlike charge interactions these are different for each ionic species, and act between a protein and both salt and buffer ions. The charge of proteins depends not only on pH, ionic charge, and salt concentration. Taking ionic dispersion forces into account goes some way towards explaining the dependence on ionic species. We demonstrate why the addition of buffer can have profound effects, including reversal of the salt dependence of the protein charge. © EDP Sciences/ Società Italiana di Fisica/ Springer-Verlag 2004.
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| 16. |
- Cline, JM, et al.
(author)
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Assessment of hormonally active agents in the reproductive tract of female nonhuman primates
- 2001
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In: Toxicologic pathology. - : SAGE Publications. - 0192-6233 .- 1533-1601. ; 29:1, s. 84-90
-
Journal article (peer-reviewed)abstract
- Using the ovariectomized macaque model of postmenopausal women's health, we investigated the effects of long-term treatments (5 weeks—3 years) with estradiol, conjugated equine estrogens (CEE), esterified estrogens, progestins such as medroxyprogesterone acetate (MPA) and nomegestrol acetate, CEE + MPA, tamoxifen, soybean phytoestrogens (SPEs), a variety of putative selective estrogen receptor modulators (SERMs), and androgens. Agents tested were selected on the basis of beneficial effects on arteries and/ or bone. Doses were scaled on a caloric or serum-concentration basis to approximate human clinical doses. We evaluated endometrial and mammary gland histopathology and morphometry and used immunohistochemistry to evaluate cell proliferation and expression of estrogen receptor alpha and progesterone receptor (PR). Both estradiol and CEE induced endometrial hyperplasia. MPA antagonized epithelial proliferation induced by CEE in endometrium and induced pseudodecidual stromal hyperplasia in some animals. Tamoxifen induced endometrial polyps, cystic hyperplasia, stromal fi brosis, and PR expression but not Ki-67 expression. SPEs were not estrogenic at dietary doses and antagonized estrogen-induced proliferation in the endometrium and breast. Nandrolone induced mucometra and an adenomyosis-like change. The potential SERM 17 alpha dihydroequilenin did not have uterotrophic or mammotrophic effects. In general, experimental findings in macaques have been predictive of outcomes in human clinical trials of the same agents.
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| 17. |
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| 18. |
- Holmer, Lars E., et al.
(author)
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A stem group brachiopod from the Lower Cambrian - support for a Micrina (Halkieriid) ancestry.
- 2002
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In: Palaeontology. - : Wiley. - 0031-0239 .- 1475-4983. ; 45:5, s. 875-882
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Journal article (peer-reviewed)abstract
- The shell structure of the Lower Cambrian Mickwitzia, a bilaterally symmetrical bivalve hitherto doubtfully assigned to the Brachiopoda, confirms that the genus shares characters with linguliform brachiopods. The columnar lamination of its organophosphatic shell is homologous with that characterizing acrotretides. The shell, however, is also pervaded by striated apatitic tubes indistinguishable from those permeating the sclerites of the problematic organophosphatic, laminar–shelled Micrina which is close to Halkieria. No crown group brachiopods have such tubes that are presumed to have contained setae. The presence of both these features in the Mickwitzia shell suggests that the stock is a stem group brachiopod with a halkieriid ancestry.
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| 19. |
- Johansson, Thomas B, et al.
(author)
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Energy for the New Millennium
- 2001
-
In: Ambio: a Journal of Human Environment. - 0044-7447. ; 30:6, s. 330-337
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Journal article (peer-reviewed)
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| 20. |
- Kaminski, Clemens, et al.
(author)
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Development of high speed spectroscopic imaging techniques for the time resolved study of spark ignition phenomena
- 2000
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In: SAE Technical Papers. - 400 Commonwealth Drive, Warrendale, PA, United States : SAE International. - 0148-7191.
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Journal article (peer-reviewed)abstract
- This paper reports on the development of novel time resolved spectroscopic imaging techniques for the study of spark ignition phenomena in combustion cells and an SI-engine. The techniques are based on planar laser induced fluorescence imaging (PLIF) of OH radicals, on fuel tracer PLIF, and on chemiluminescence. The techniques could be achieved at repetition rates reaching several hundreds of kilo-Hz and were cycle resolved. These techniques offer a new path along which engine related diagnostics can be undertaken, providing a wealth of information on turbulent spark ignition.
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| 21. |
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| 22. |
- Karlsson, J, 1966-, et al.
(author)
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Sequencing of the Francisella tularensis strain Schu 4 genome reveals the shikimate and purine metabolic pathways, targets for the construction of a rationally attenuated auxotrophic vaccine.
- 2000
-
In: Microbial & Comparative Genomics. - : Mary Ann Liebert Inc. - 1090-6592 .- 2168-6637. ; 5:1, s. 25-39
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Journal article (peer-reviewed)abstract
- Francisella tularensis is the etiological agent of tularemia, a serious disease in several Northern hemisphere countries. The organism has fastidious growth requirements and is very poorly understood at the genetic and molecular levels. Given the lack of data on this organism, we undertook the sample sequencing of its genome. A random library of DNA fragments from a highly virulent strain (Schu 4) of F. tularensis was constructed and the nucleotide sequences of 13,904 cloned fragments were determined and assembled into 353 contigs. A total of 1.83 Mb of nucleotide sequence was obtained that had a G+C content of 33.2%. Genes located on plasmids pOM1 and pNFL10, which had been previously isolated from low virulence strains of F. tularensis, were absent but all of the other known F. tularensis genes were represented in the assembled data. F. tularensis Schu4 was able to grow in the absence of aromatic amino acids and orthologues of genes which could encode enzymes in the shikimate pathway in other bacteria were identified in the assembled data. Genes that could encode all of the enzymes in the purine biosynthetic and most of the en- zymes in the purine salvage pathways were also identified. This data will be used to develop defined rationally attenuated mutants of F. tularensis, which could be used as replacements for the existing genetically undefined live vaccine strain.
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| 23. |
- Lewis, Cathryn M, et al.
(author)
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Genome scan meta-analysis of schizophrenia and bipolar disorder, part II : Schizophrenia
- 2003
-
In: American Journal of Human Genetics. - 0002-9297 .- 1537-6605. ; 73:1, s. 34-48
-
Journal article (peer-reviewed)abstract
- Schizophrenia is a common disorder with high heritability and a 10-fold increase in risk to siblings of probands. Replication has been inconsistent for reports of significant genetic linkage. To assess evidence for linkage across studies, rank-based genome scan meta-analysis (GSMA) was applied to data from 20 schizophrenia genome scans. Each marker for each scan was assigned to 1 of 120 30-cM bins, with the bins ranked by linkage scores (1 = most significant) and the ranks averaged across studies (R(avg)) and then weighted for sample size (N(sqrt)[affected casess]). A permutation test was used to compute the probability of observing, by chance, each bin's average rank (P(AvgRnk)) or of observing it for a bin with the same place (first, second, etc.) in the order of average ranks in each permutation (P(ord)). The GSMA produced significant genomewide evidence for linkage on chromosome 2q (PAvgRnk<.000417). Two aggregate criteria for linkage were also met (clusters of nominally significant P values that did not occur in 1,000 replicates of the entire data set with no linkage present): 12 consecutive bins with both P(AvgRnk) and P(ord)<.05, including regions of chromosomes 5q, 3p, 11q, 6p, 1q, 22q, 8p, 20q, and 14p, and 19 consecutive bins with P(ord)<.05, additionally including regions of chromosomes 16q, 18q, 10p, 15q, 6q, and 17q. There is greater consistency of linkage results across studies than has been previously recognized. The results suggest that some or all of these regions contain loci that increase susceptibility to schizophrenia in diverse populations.
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| 24. |
- Ling, G., et al.
(author)
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PATCHED and p53 gene alterations in sporadic and hereditary basal cell cancer
- 2001
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In: Oncogene. - : Springer. - 0950-9232 .- 1476-5594. ; 20:53, s. 7770-7778
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Journal article (peer-reviewed)abstract
- It is widely accepted that disruption of the hedgehog-patched pathway is a key event in development of basal cell cancer. In addition to patched gene alterations, p53 gene mutations are also frequent in basal cell cancer. We determined loss of heterozygosity in the patched and p53 loci as well as sequencing the p53 gene in tumors both from sporadic and hereditary cases. A total of 70 microdissected samples from tumor and adjacent skin were subjected to PCR followed by fragment analysis and DNA sequencing. We found allelic loss in the patched locus in 6/8 sporadic basal cell cancer and 17/19 hereditary tumors. All sporadic and 7/20 hereditary tumors showed p53 gene mutations. Loss of heterozygosity in the p53 locus was rare in both groups. The p53 mutations detected in hereditary tumors included rare single nucleotide deletions and unusual double-base substitutions compared to the typical ultraviolet light induced missense mutations found in sporadic tumors. Careful microdissection of individual tumors revealed genetically linked subclones with different p53 and/or patched genotype providing an insight on time sequence of genetic events. The high frequency and co-existence of genetic alterations in the patched and p53 genes suggest that both these genes are important in the development of basal cell cancer.
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| 25. |
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