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| 6. |
- Aad, G., et al.
(author)
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- 2015
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In: Physical Review C (Nuclear Physics). - 0556-2813 .- 1089-490X. ; 92:3
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Journal article (peer-reviewed)
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| 7. |
- Aad, G., et al.
(author)
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- 2015
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| 8. |
- Aad, G., et al.
(author)
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- 2015
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In: Physical Review D (Particles, Fields, Gravitation and Cosmology). - 1550-2368 .- 1550-7998. ; 91:11, s. 112011-
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| 9. |
- Aad, G., et al.
(author)
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- 2015
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In: Physical Review Letters. - 1079-7114 .- 0031-9007. ; 115:9
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Journal article (peer-reviewed)
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| 10. |
- Aad, G., et al.
(author)
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- 2015
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In: Physical Review D (Particles, Fields, Gravitation and Cosmology). - 1550-2368 .- 1550-7998. ; 92:1
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Journal article (peer-reviewed)
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| 11. |
- Aad, G., et al.
(author)
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- 2015
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In: Physical Review Letters. - : American Physical Society. - 1079-7114 .- 0031-9007. ; 114:22
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| 12. |
- Aad, G., et al.
(author)
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- 2015
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In: Journal of High Energy Physics. - 1029-8479 .- 1126-6708. ; :8
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Journal article (peer-reviewed)
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| 13. |
- Aad, G., et al.
(author)
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- 2015
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In: Physical Review D (Particles, Fields, Gravitation and Cosmology). - 1550-2368 .- 1550-7998. ; 92:9
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Journal article (peer-reviewed)
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| 14. |
- Aad, G., et al.
(author)
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- 2015
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In: Physical Review Letters. - 1079-7114 .- 0031-9007. ; 115:13
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| 15. |
- Aad, G., et al.
(author)
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- 2015
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Journal article (peer-reviewed)
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| 16. |
- Aad, G., et al.
(author)
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- 2015
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In: Physical Review Letters. - 1079-7114 .- 0031-9007. ; 115:3
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Journal article (peer-reviewed)
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| 21. |
- de Zwarte, Sonja M. C., et al.
(author)
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The association between familial risk and brain abnormalities is disease specific : an ENIGMA-relatives study of schizophrenia and bipolar disorder
- 2019
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In: Biological Psychiatry. - : Elsevier. - 0006-3223 .- 1873-2402. ; 86:7, s. 545-556
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Journal article (peer-reviewed)abstract
- BACKGROUND: Schizophrenia and bipolar disorder share genetic liability, and some structural brain abnormalities are common to both conditions. First-degree relatives of patients with schizophrenia (FDRs-SZ) show similar brain abnormalities to patients, albeit with smaller effect sizes. Imaging findings in first-degree relatives of patients with bipolar disorder (FDRs-BD) have been inconsistent in the past, but recent studies report regionally greater volumes compared with control subjects.METHODS: We performed a meta-analysis of global and subcortical brain measures of 6008 individuals (1228 FDRs-SZ, 852 FDRs-BD, 2246 control subjects, 1016 patients with schizophrenia, 666 patients with bipolar disorder) from 34 schizophrenia and/or bipolar disorder family cohorts with standardized methods. Analyses were repeated with a correction for intracranial volume (ICV) and for the presence of any psychopathology in the relatives and control subjects.RESULTS: FDRs-BD had significantly larger ICV (d = +0.16, q < .05 corrected), whereas FDRs-SZ showed smaller thalamic volumes than control subjects (d = -0.12, q < .05 corrected). ICV explained the enlargements in the brain measures in FDRs-BD. In FDRs-SZ, after correction for ICV, total brain, cortical gray matter, cerebral white matter, cerebellar gray and white matter, and thalamus volumes were significantly smaller; the cortex was thinner (d < -0.09, q < .05 corrected); and third ventricle was larger (d = +0.15, q < .05 corrected). The findings were not explained by psychopathology in the relatives or control subjects.CONCLUSIONS: Despite shared genetic liability, FDRs-SZ and FDRs-BD show a differential pattern of structural brain abnormalities, specifically a divergent effect in ICV. This may imply that the neurodevelopmental trajectories leading to brain anomalies in schizophrenia or bipolar disorder are distinct.
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| 22. |
- Graham, Emily B., et al.
(author)
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Microbes as Engines of Ecosystem Function : When Does Community Structure Enhance Predictions of Ecosystem Processes?
- 2016
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In: Frontiers in Microbiology. - : Frontiers Media SA. - 1664-302X. ; 7
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Journal article (peer-reviewed)abstract
- Microorganisms are vital in mediating the earth's biogeochemical cycles; yet, despite our rapidly increasing ability to explore complex environmental microbial communities, the relationship between microbial community structure and ecosystem processes remains poorly understood. Here, we address a fundamental and unanswered question in microbial ecology: 'When do we need to understand microbial community structure to accurately predict function?' We present a statistical analysis investigating the value of environmental data and microbial community structure independently and in combination for explaining rates of carbon and nitrogen cycling processes within 82 global datasets. Environmental variables were the strongest predictors of process rates but left 44% of variation unexplained on average, suggesting the potential for microbial data to increase model accuracy. Although only 29% of our datasets were significantly improved by adding information on microbial community structure, we observed improvement in models of processes mediated by narrow phylogenetic guilds via functional gene data, and conversely, improvement in models of facultative microbial processes via community diversity metrics. Our results also suggest that microbial diversity can strengthen predictions of respiration rates beyond microbial biomass parameters, as 53% of models were improved by incorporating both sets of predictors compared to 35% by microbial biomass alone. Our analysis represents the first comprehensive analysis of research examining links between microbial community structure and ecosystem function. Taken together, our results indicate that a greater understanding of microbial communities informed by ecological principles may enhance our ability to predict ecosystem process rates relative to assessments based on environmental variables and microbial physiology.
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| 23. |
- Hecker, Andreas, et al.
(author)
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Phosphocholine-Modified Macromolecules and Canonical Nicotinic Agonists Inhibit ATP-Induced IL-1 beta Release
- 2015
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In: Journal of Immunology. - : AMER ASSOC IMMUNOLOGISTS. - 0022-1767 .- 1550-6606. ; 195:5, s. 2325-2334
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Journal article (peer-reviewed)abstract
- IL-1 beta is a potent proinflammatory cytokine of the innate immune system that is involved in host defense against infection. However, increased production of IL-1 beta plays a pathogenic role in various inflammatory diseases, such as rheumatoid arthritis, gout, sepsis, stroke, and transplant rejection. To prevent detrimental collateral damage, IL-1 beta release is tightly controlled and typically requires two consecutive danger signals. LPS from Gram-negative bacteria is a prototypical first signal inducing pro-IL-1 beta synthesis, whereas extracellular ATP is a typical second signal sensed by the ATP receptor P2X7 that triggers activation of the NLRP3-containing inflammasome, proteolytic cleavage of pro-IL-1 beta by caspase-1, and release of mature IL-1 beta. Mechanisms controlling IL-1 beta release, even in the presence of both danger signals, are needed to protect from collateral damage and are of therapeutic interest. In this article, we show that acetylcholine, choline, phosphocholine, phosphocholine-modified LPS from Haemophilus influenzae, and phosphocholine-modified protein efficiently inhibit ATP-mediated IL-1 beta release in human and rat monocytes via nicotinic acetylcholine receptors containing subunits alpha 7, alpha 9, and/or alpha 10. Of note, we identify receptors for phosphocholine-modified macromolecules that are synthesized by microbes and eukaryotic parasites and are well-known modulators of the immune system. Our data suggest that an endogenous anti-inflammatory cholinergic control mechanism effectively controls ATP-mediated release of IL-1 beta and that the same mechanism is used by symbionts and misused by parasites to evade innate immune responses of the host.
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| 24. |
- Aad, G., et al.
(author)
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- 2015
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In: Physical Review C (Nuclear Physics). - 0556-2813 .- 1089-490X. ; 92:3
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Journal article (peer-reviewed)
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| 25. |
- Aad, G., et al.
(author)
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- 2015
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In: Journal of High Energy Physics. - : Springer-Verlag New York. - 1029-8479 .- 1126-6708. ; :9
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Journal article (peer-reviewed)
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| 26. |
- Aad, G., et al.
(author)
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- 2015
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Journal article (peer-reviewed)
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| 27. |
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| 32. |
- Abou Nada, Fahd Jouda, et al.
(author)
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Remote temperature sensing on and beneath atmospheric plasma sprayed thermal barrier coatings using thermographic phosphors
- 2016
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In: Surface & Coatings Technology. - : Elsevier BV. - 0257-8972 .- 1879-3347. ; 302, s. 359-367
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Journal article (peer-reviewed)abstract
- Investigations on remote temperature sensing of yttria stabilized zirconia (YSZ) thermal barrier coatings (TBCs) at the surface and at the bond-coat/top-coat interface were carried out. Using Y2O3:Eu thermographic phosphor as an embedded temperature sensing layer, sub-surface temperature probing through 300 μm of atmospheric plasma sprayed YSZ is demonstrated. The Y2O3:Eu thermographic phosphor displays a temperature sensitivity ranging between 400 °C up to a maximum of 900 °C when utilizing the luminescence originating from the 611 nm emission band. Dysprosium stabilized zirconia (10 wt.% DySZ), a TBC material, is also investigated and established as a temperature sensor from 400 °C up to a temperature of 1000 °C using both the intensity decay time and emission intensity ratio methods. In addition, the luminescence of presumed optically inactive YSZ materials was spectroscopically investigated in terms of optical interferences caused by impurities. A validation temperature probing measurement through 300 μm of YSZ top-coat was successfully performed in a SGT-800 Siemens burner running at six different operating conditions in an atmospheric combustion rig.
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| 33. |
- Arndt, D. S., et al.
(author)
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State of the Climate in 2016
- 2017
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In: Bulletin of The American Meteorological Society - (BAMS). - 0003-0007 .- 1520-0477. ; 98:8, s. S1-S280
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Journal article (peer-reviewed)abstract
- In 2016, the dominant greenhouse gases released into Earth's atmosphere-carbon dioxide, methane, and nitrous oxide-continued to increase and reach new record highs. The 3.5 +/- 0.1 ppm rise in global annual mean carbon dioxide from 2015 to 2016 was the largest annual increase observed in the 58-year measurement record. The annual global average carbon dioxide concentration at Earth's surface surpassed 400 ppm (402.9 +/- 0.1 ppm) for the first time in the modern atmospheric measurement record and in ice core records dating back as far as 800000 years. One of the strongest El Nino events since at least 1950 dissipated in spring, and a weak La Nina evolved later in the year. Owing at least in part to the combination of El Nino conditions early in the year and a long-term upward trend, Earth's surface observed record warmth for a third consecutive year, albeit by a much slimmer margin than by which that record was set in 2015. Above Earth's surface, the annual lower troposphere temperature was record high according to all datasets analyzed, while the lower stratospheric temperature was record low according to most of the in situ and satellite datasets. Several countries, including Mexico and India, reported record high annual temperatures while many others observed near-record highs. A week-long heat wave at the end of April over the northern and eastern Indian peninsula, with temperatures surpassing 44 degrees C, contributed to a water crisis for 330 million people and to 300 fatalities. In the Arctic the 2016 land surface temperature was 2.0 degrees C above the 1981-2010 average, breaking the previous record of 2007, 2011, and 2015 by 0.8 degrees C, representing a 3.5 degrees C increase since the record began in 1900. The increasing temperatures have led to decreasing Arctic sea ice extent and thickness. On 24 March, the sea ice extent at the end of the growth season saw its lowest maximum in the 37-year satellite record, tying with 2015 at 7.2% below the 1981-2010 average. The September 2016 Arctic sea ice minimum extent tied with 2007 for the second lowest value on record, 33% lower than the 1981-2010 average. Arctic sea ice cover remains relatively young and thin, making it vulnerable to continued extensive melt. The mass of the Greenland Ice Sheet, which has the capacity to contribute similar to 7 m to sea level rise, reached a record low value. The onset of its surface melt was the second earliest, after 2012, in the 37-year satellite record. Sea surface temperature was record high at the global scale, surpassing the previous record of 2015 by about 0.01 degrees C. The global sea surface temperature trend for the 21st century-to-date of +0.162 degrees C decade(-1) is much higher than the longer term 1950-2016 trend of +0.100 degrees C decade(-1). Global annual mean sea level also reached a new record high, marking the sixth consecutive year of increase. Global annual ocean heat content saw a slight drop compared to the record high in 2015. Alpine glacier retreat continued around the globe, and preliminary data indicate that 2016 is the 37th consecutive year of negative annual mass balance. Across the Northern Hemisphere, snow cover for each month from February to June was among its four least extensive in the 47-year satellite record. Continuing a pattern below the surface, record high temperatures at 20-m depth were measured at all permafrost observatories on the North Slope of Alaska and at the Canadian observatory on northernmost Ellesmere Island. In the Antarctic, record low monthly surface pressures were broken at many stations, with the southern annular mode setting record high index values in March and June. Monthly high surface pressure records for August and November were set at several stations. During this period, record low daily and monthly sea ice extents were observed, with the November mean sea ice extent more than 5 standard deviations below the 1981-2010 average. These record low sea ice values contrast sharply with the record high values observed during 2012-14. Over the region, springtime Antarctic stratospheric ozone depletion was less severe relative to the 1991-2006 average, but ozone levels were still low compared to pre-1990 levels. Closer to the equator, 93 named tropical storms were observed during 2016, above the 1981-2010 average of 82, but fewer than the 101 storms recorded in 2015. Three basins-the North Atlantic, and eastern and western North Pacific-experienced above-normal activity in 2016. The Australian basin recorded its least active season since the beginning of the satellite era in 1970. Overall, four tropical cyclones reached the Saffir-Simpson category 5 intensity level. The strong El Nino at the beginning of the year that transitioned to a weak La Nina contributed to enhanced precipitation variability around the world. Wet conditions were observed throughout the year across southern South America, causing repeated heavy flooding in Argentina, Paraguay, and Uruguay. Wetter-than-usual conditions were also observed for eastern Europe and central Asia, alleviating the drought conditions of 2014 and 2015 in southern Russia. In the United States, California had its first wetter-than-average year since 2012, after being plagued by drought for several years. Even so, the area covered by drought in 2016 at the global scale was among the largest in the post-1950 record. For each month, at least 12% of land surfaces experienced severe drought conditions or worse, the longest such stretch in the record. In northeastern Brazil, drought conditions were observed for the fifth consecutive year, making this the longest drought on record in the region. Dry conditions were also observed in western Bolivia and Peru; it was Bolivia's worst drought in the past 25 years. In May, with abnormally warm and dry conditions already prevailing over western Canada for about a year, the human-induced Fort McMurray wildfire burned nearly 590000 hectares and became the costliest disaster in Canadian history, with $3 billion (U.S. dollars) in insured losses.
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| 34. |
- Arndt, D. S., et al.
(author)
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STATE OF THE CLIMATE IN 2017
- 2018
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In: Bulletin of The American Meteorological Society - (BAMS). - : American Meteorological Society. - 0003-0007 .- 1520-0477. ; 99:8, s. S1-S310
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Research review (peer-reviewed)
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| 35. |
- Bersani, Cinzia, et al.
(author)
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A model using concomitant markers for predicting outcome in human papillomavirus positive oropharyngeal cancer
- 2017
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In: Oral Oncology. - : Elsevier. - 1368-8375 .- 1879-0593. ; 68, s. 53-59
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Journal article (peer-reviewed)abstract
- Objective: Head-neck cancer therapy has become intensified. With radiotherapy alone, 3-year disease-free survival (DFS) is 80% for HPV-positive TSCC/BOTSCC and better for patients with favorable characteristics, suggesting therapy could be tapered for some, decreasing side-effects. Therefore, we built a model to predict progression-free survival for patients with HPV-positive TSCC and BOTSCC. Material and methods: TSCC/BOTSCC patients treated curatively between 2000 and 2011, with HPV16 DNA/E7 mRNA positive tumors examined for CD8(+) TILs, HPV16 mRNA and HLA class I expression were included. Patients were split randomly 65/35 into training and validation sets, and LASSO regression was used to select a model in the training set, the performance of which was evaluated in the validation set. Results: 258 patients with HPV DNA/E7 mRNA positive tumors could be included, 168 and 90 patients in the respective sets. No treatment improved prognosis compared to radiotherapy alone. CD8(+) TIL counts and young age were the strongest predictors of survival, followed by T-stage <3 and presence of HPV16 E2 mRNA. The model had an area under curve (AUC) of 76%. A model where the presence of three of four of these markers defined good prognosis captured 56% of non-relapsing patients with a positive predictive value of 98% in the validation set. Furthermore, the model identified 35% of our cohort that was over-treated and could safely have received de-escalated therapy. Conclusion: CD8(+) TIL counts, age, T-stage and E2 expression could predict progression-free survival, identifying patients eligible for randomized trials with milder treatment, potentially reducing side effects without worsening prognosis.
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| 36. |
- Bersani, Cinzia, et al.
(author)
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Targeted sequencing of tonsillar and base of tongue cancer and human papillomavirus positive unknown primary of the head and neck reveals prognostic effects of mutated FGFR3
- 2017
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In: Oncotarget. - : IMPACT JOURNALS LLC. - 1949-2553. ; 8:21, s. 35339-35350
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Journal article (peer-reviewed)abstract
- BACKGROUND: Human papillomavirus positive (HPV+) tonsillar cancer (TSCC), base of tongue cancer (BOTSCC) and unknown primary cancer of the head and neck (HNCUP) have better outcome than corresponding HPV- cancers. To find predictive markers for response to treatment, and correlations and differences in mutated oncogenes and suppressor genes between HPV+ TSCC/BOTSSCC and HPV+ HNCUP and HPV- TSCC/BOTSCC targeted next-generation sequencing was performed of frequently mutated regions in 50 cancer related genes.PATIENTS AND METHODS: DNA from 348 TSCC/BOTSCC and 20 HNCUP from patients diagnosed 2000-2011, was sequenced by the Ion Proton sequencing platform using the Ion AmpliSeq Cancer Hotspot Panel v2 to identify frequently mutated regions in 50 cancer related genes. Ion Torrent Variant Caller software was used to call variants.RESULTS: 279 HPV+ TSCC/BOTSCC, 46 HPV- TSCC/BOTSCC and 19 HPV+ HNCUP samples qualified for further analysis. Mutations/tumor were fewer in HPV+ TSCC/BOTSCC and HNCUP, compared to HPV- tumors (0.92 vs. 1.32 vs. 1.68). Differences in mutation frequency of TP53 and PIK3CA were found between HPV+ TSCC/BOTSCC and HNCUP and HPV- TSCC/BOTSCC. In HPV+ TSCC/BOTSCC presence of FGFR3 mutations correlated to worse prognosis. Other correlations to survival within the groups were not disclosed.CONCLUSIONS: In HPV+ TSCC/BOTSCC mutation of PIK3CA was most frequently observed, while TP53 mutations dominated in HPV- TSCC/BOTSCC. In HPV+ TSCC/ BOTSCC and HNCUP, mutations/tumor were similar in frequency and fewer compared to that in HPV- TSCC/BOTSCC. Notably, FGFR3 mutations in HPV+ TSCC/BOTSCC indicated worse prognosis.
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| 37. |
- Binder, Christian, 1988-
(author)
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Experiments on Heat Transfer During Diesel Combustion Using Optical Methods
- 2019
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Doctoral thesis (other academic/artistic)abstract
- Transportation is a crucial part of modern societies. This includes their economies. Trade and the transportation of goods have a great influence on prosperity. Nevertheless, the transportation sector with road transport in particular is heavily dependent on fossil fuels and emits a significant amount of greenhouse gases. One approach to mitigate the negative environmental impact of road transport is to increase the efficiency of its most common propulsion system, that is the internal combustion engine. Due to its dominant role in the road freight transportation sector, this thesis directs its attention to heavy-duty diesel engines. In-cylinder heat losses are one of the main factors that reduce engine efficiency. Therefore, the objective of this thesis is to gain a better understanding of the processes that influence in-cylinder heat losses by resolving them in time and space using optical methods. In diesel engines, most of the in-cylinder heat losses are transferred to the piston. As a result, this thesis focuses specifically on that component.In this research project, the task to determine in-cylinder heat losses to the piston in heavy-duty diesel engines is divided into two parts. The most important part consists of fast surface temperature measurements on the piston using phosphor thermometry. The heat transfer coefficient inside the piston cooling gallery defines an additional steady-state boundary condition.The work presented in this thesis includes therefore efforts to improve in-cylinder surface temperature measurements and an assessment of their accuracy and precision. Furthermore, it comprises of experimental results from measurements on steel pistons and a piston with an insulating thermal barrier coating. Results reveal spatial differences of the heat transfer during diesel combustion. Measurements at the impingement point indicate a strong influence of flame impingement on local heat transfer. A correlation is detected between heat transfer and cycle-to-cycle variations of flame impingement.The thesis also reports efforts to determine the heat transfer coefficient inside the piston cooling gallery. Using an infrared camera a method is presented to spatially resolve convective heat transfer inside this cooling channel.
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| 38. |
- Binder, Christian, 1988-, et al.
(author)
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Heat Loss Analysis of a Steel Piston and a YSZ Coated Piston in a Heavy-Duty Diesel Engine Using Phosphor Thermometry Measurements
- 2017
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In: SAE International Journal of Engines. - : SAE International. - 1946-3936 .- 1946-3944. ; 10:4, s. 1954-1968
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Journal article (peer-reviewed)abstract
- Diesel engine manufacturers strive towards further efficiency improvements. Thus, reducing in-cylinder heat losses is becoming increasingly important. Understanding how location, thermal insulation, and engine operating conditions affect the heattransfer to the combustion chamber walls is fundamental for the future reduction of in-cylinder heat losses. This study investigates the effect of a 1mm-thick plasma-sprayed yttria-stabilized zirconia (YSZ) coating on a piston. Such a coated piston and a similar steel piston are compared to each other based on experimental data for the heat release, the heat transfer rate to the oil in the piston cooling gallery, the local instantaneous surface temperature, and the local instantaneous surface heat flux. The surface temperature was measured for different crank angle positions using phosphor thermometry. The fuel was chosen to be n-heptane to facilitate surface temperature measurements during non-skip-fire, thermally stabilized operating conditions. Assuming one-dimensional heat transfer inside each piston, the local instantaneous surface heat flux was calculated using the heat transfer rate to the oil in the piston cooling gallery and the surface temperature measurements. The results from this study show that the surface temperature variation is similar for both pistons. The instantaneous heat flux during combustion is however significantly greater for the steel piston than the coated piston. The heat release analysis also indicates that combustion is slower for the piston with the yttria-stabilized zirconia coating.
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| 39. |
- Braun, Judith, et al.
(author)
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Full15N tracer accounting to revisit major assumptions of 15N isotope pool dilution approaches for gross nitrogen mineralization
- 2018
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In: Soil Biology and Biochemistry. - : Elsevier BV. - 0038-0717. ; 117, s. 16-26
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Journal article (peer-reviewed)abstract
- © 2017 The Authors The 15 N isotope pool dilution (IPD) technique is the only available method for measuring gross ammonium (NH 4 + ) production and consumption rates. Rapid consumption of the added 15 N-NH 4 + tracer is commonly observed, but the processes responsible for this consumption are not well understood. The primary objectives of this study were to determine the relative roles of biotic and abiotic processes in 15 N-NH 4 + consumption and to investigate the validity of one of the main assumptions of IPD experiments, i.e., that no reflux of the consumed 15 N tracer occurs during the course of the experiments. We added a 15 N-NH 4 + tracer to live and sterile (autoclaved) soil using mineral topsoil from a beech forest and a grassland in Austria that differed in NH 4 + concentrations and NH 4 + consumption kinetics. We quantified both biotic tracer consumption (i.e. changes in the concentrations and 15 N enrichments of NH 4 + , dissolved organic N (DON), NO 3 − and the microbial N pool) and abiotic tracer consumption (i.e., fixation by clay and/or humic substances). We achieved full recovery of the 15 N tracer in both soils over the course of the 48 h incubation. For the forest soil, we found no rapid consumption of the 15 N tracer, and the majority of tracer (78%) remained unconsumed at the end of the incubation period. In contrast, the grassland soil showed rapid 15 N-NH 4 + consumption immediately after tracer addition, which was largely due to both abiotic fixation (24%) and biotic processes, largely uptake by soil microbes (10%) and nitrification (13%). We found no evidence for reflux of 15 N-NH 4 + over the 48 h incubation period in either soil. Our study therefore shows that 15 N tracer reflux during IPD experiments is negligible for incubation times of up to 48 h, even when rapid NH 4 + consumption occurs. Such experiments are thus robust to the assumption that immobilized labeled N is not re–mobilized during the experimental period and does not impact calculations of gross N mineralization.
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| 40. |
- Echternach, Matthias, et al.
(author)
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Laryngeal evidence for the first and second passaggio in professionally trained sopranos
- 2017
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In: PLOS ONE. - : Public Library Science. - 1932-6203. ; 12:5
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Journal article (peer-reviewed)abstract
- Introduction Due to a lack of empirical data, the current understanding of the laryngeal mechanics in the passaggio regions (i.e., the fundamental frequency ranges where vocal registration events usually occur) of the female singing voice is still limited. Material and methods In this study the first and second passaggio regions of 10 professionally trained female classical soprano singers were analyzed. The sopranos performed pitch glides from A3 (f(o) = 220 Hz) to A4 (f(o) = 440 Hz) and from A4 (f(o) = 440 Hz) to A5 (f(o) = 880 Hz) on the vowel [i:]. Vocal fold vibration was assessed with trans-nasal high speed videoendoscopy at 20,000 fps, complemented by simultaneous electroglottographic (EGG) and acoustic recordings. Register breaks were perceptually rated by 12 voice experts. Voice stability was documented with the EGG-based sample entropy. Glottal opening and closing patterns during the passaggi were analyzed, supplemented with open quotient data extracted from the glottal area waveform. Results In both the first and the second passaggio, variations of vocal fold vibration patterns were found. Four distinct patterns emerged: smooth transitions with either increasing or decreasing durations of glottal closure, abrupt register transitions, and intermediate loss of vocal fold contact. Audible register transitions (in both the first and second passaggi) generally coincided with higher sample entropy values and higher open quotient variance through the respective passaggi. Conclusions Noteworthy vocal fold oscillatory registration events occur in both the first and the second passaggio even in professional sopranos. The respective transitions are hypothesized to be caused by either (a) a change of laryngeal biomechanical properties; or by (b) vocal tract resonance effects, constituting level 2 source-filter interactions.
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| 41. |
- Fuchslueger, Lucia, et al.
(author)
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Microbial carbon and nitrogen cycling responses to drought and temperature in differently managed mountain grasslands
- 2019
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In: Soil Biology and Biochemistry. - : Elsevier BV. - 0038-0717 .- 1879-3428. ; 135, s. 144-153
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Journal article (peer-reviewed)abstract
- Grassland management can modify soil microbial carbon (C) and nitrogen (N) cycling, affecting the resistance to extreme weather events, which are predicted to increase in frequency and magnitude in the near future. However, effects of grassland management on microbial C and N cycling and their responses to extreme weather events, such as droughts and heatwaves, have rarely been tested in a combined approach. We therefore investigated whether grassland management affects microbial C and N cycling responses to drought and temperature manipulation. We collected soils from in situ drought experiments conducted in an extensively managed and an abandoned mountain grassland and incubated them at two temperature levels. We measured microbial respiration and substrate incorporation, as well as gross rates of organic and inorganic N cycling to estimate microbial C and N use efficiencies (CUE and NUE). The managed grassland was characterized by lower microbial biomass, lower fungi to bacteria ratio, and higher microbial CUE, but only slightly different microbial NUE. At both sites drought induced a shift in microbial community composition driven by an increase in Gram-positive bacterial abundance. Drought significantly reduced C substrate respiration and incorporation by microbes at both sites, while microbial CUE remained constant. In contrast, drought increased gross rates of N mineralization at both sites, whereas gross amino acid uptake rates only marginally changed. We observed a significant direct, as well as interactive effect between land management and drought on microbial NUE. Increased temperatures significantly stimulated microbial respiration and reduced microbial CUE independent of drought or land management. Although microbial N processing rates showed no clear response, microbial NUE significantly decreased at higher temperatures. In summary in our study, microbial CUE, in particular respiration, is more responsive to temperature changes. Although N processing rates were stronger responding to drought than to temperature microbial NUE was affected by both drought and temperature increase. We conclude that direct effects of drought and heatwaves can induce different responses in soil microbial C and N cycling similarly in the studied land management systems.
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| 42. |
- Gentsch, Norman, et al.
(author)
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Temperature response of permafrost soil carbon is attenuated by mineral protection
- 2018
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In: Global Change Biology. - : Wiley. - 1354-1013 .- 1365-2486. ; 24:8, s. 3401-3415
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Journal article (peer-reviewed)abstract
- Climate change in Arctic ecosystems fosters permafrost thaw and makes massive amounts of ancient soil organic carbon (OC) available to microbial breakdown. However, fractions of the organic matter (OM) may be protected from rapid decomposition by their association with minerals. Little is known about the effects of mineral-organic associations (MOA) on the microbial accessibility of OM in permafrost soils and it is not clear which factors control its temperature sensitivity. In order to investigate if and how permafrost soil OC turnover is affected by mineral controls, the heavy fraction (HF) representing mostly MOA was obtained by density fractionation from 27 permafrost soil profiles of the Siberian Arctic. In parallel laboratory incubations, the unfractionated soils (bulk) and their HF were comparatively incubated for 175 days at 5 and 15 degrees C. The HF was equivalent to 70 +/- 9% of the bulk CO2 respiration as compared to a share of 63 +/- 1% of bulk OC that was stored in the HF. Significant reduction of OC mineralization was found in all treatments with increasing OC content of the HF (HF-OC), clay-size minerals and Fe or Al oxyhydroxides. Temperature sensitivity (Q10) decreased with increasing soil depth from 2.4 to 1.4 in the bulk soil and from 2.9 to 1.5 in the HF. A concurrent increase in the metal-to-HF-OC ratios with soil depth suggests a stronger bonding of OM to minerals in the subsoil. There, the younger C-14 signature in CO2 than that of the OC indicates a preferential decomposition of the more recent OM and the existence of a MOA fraction with limited access of OM to decomposers. These results indicate strong mineral controls on the decomposability of OM after permafrost thaw and on its temperature sensitivity. Thus, we here provide evidence that OM temperature sensitivity can be attenuated by MOA in permafrost soils.
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| 43. |
- Gooßen, Sebastian, et al.
(author)
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Sensing Polymer Chain Dynamics through Ring Topology: A Neutron Spin Echo Study.
- 2015
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In: Physical Review Letters. - 1079-7114. ; 115:14
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Journal article (peer-reviewed)abstract
- Using neutron spin echo spectroscopy, we show that the segmental dynamics of polymer rings immersed in linear chains is completely controlled by the host. This transforms rings into ideal probes for studying the entanglement dynamics of the embedding matrix. As a consequence of the unique ring topology, in long chain matrices the entanglement spacing is directly revealed, unaffected by local reptation of the host molecules beyond this distance. In shorter entangled matrices, where in the time frame of the experiment secondary effects such as contour length fluctuations or constraint release could play a role, the ring motion reveals that the contour length fluctuation is weaker than assumed in state-of-the-art rheology and that the constraint release is negligible. We expect that rings, as topological probes, will also grant direct access to molecular aspects of polymer motion which have been inaccessible until now within chains adhering to more complex architectures.
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| 44. |
- Li, Zheming, et al.
(author)
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Simultaneous multispectral imaging of flame species using Frequency Recognition Algorithm for Multiple Exposures (FRAME)
- 2018
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In: Combustion and Flame. - : Elsevier BV. - 0010-2180. ; 192, s. 160-169
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Journal article (peer-reviewed)abstract
- Imaging the interaction between different combustion species under turbulent flame conditions requires methods that both are extremely fast and provide means to spectrally separate different signals. Current experimental solutions to achieve this often rely on using several cameras that are time-gated and/or equipped with different spectral filters. In this work we explore a technique called Frequency Recognition Algorithm for Multiple Exposures (FRAME) as an alternative solution for instantaneous multispectral imaging of flame species. The method is based on exciting different species with different spatial “codes” and to separate each signal component using a spatial frequency-sensitive lock-in algorithm. This methodology permits the signal from several different species to be recorded at the exact same time with a single camera. Furthermore, since the signals are recognized based on the superimposed spatial codes, there is no need for spectral separation prior to detection. The entire fluorescence envelope from each species can thus, in principle, be detected. In the current work, we present simultaneous planar laser-induced fluorescence imaging of OH and CH2O in a turbulent dimethyl ether (DME)/air flame.
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| 45. |
- Lockhart, Erin, et al.
(author)
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Stress-induced changes in carbon allocation among metabolite pools influence isotope-based predictions of water use efficiency in Phaseolus vulgaris
- 2016
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In: Functional Plant Biology. - 1445-4408 .- 1445-4416. ; 43:12, s. 1149-1158
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Journal article (peer-reviewed)abstract
- Understanding how major food crops respond to environmental stress will expand our capacity to improve food production with growing populations and a changing climate. This study uses chemical and physiological adaptations to heat, water deficit and elevated light stresses in Phaseolus vulgaris L. to identify changes in carbon (C) allocation that, combined with post-photosynthetic fractionation of C isotopes, influences water use efficiency (WUE) predictions. The chemical stress response was explored through changes in C allocation to the carbohydrate and cyclitol pools using GC-triple quadrupole MS. Carbon allocation to the sucrose pool fluctuated significantly among treatments, and the putative osmolytes and osmoprotectants (myo-inositol and d-ononitol) accumulated under stress. Significant osmotic adjustment (P<0.05), quantified via pressure-volume curve analysis, was detected between control and stress treatments, although this was not attributable to active accumulation of the metabolites. Compound-specific 13C isotope abundance was measured using liquid chromatography isotope ratio MS to predict intrinsic WUE. In contrast to other metabolites measured, the δ13C of the sucrose pool fluctuated according to treatment and was proportional to predicted values based upon modelled Δ13C from gas exchange data. The results suggest that the accuracy and precision of predicting WUE may be enhanced by compound-specific analysis of Δ13C and that changes in the allocation of C among metabolite pools may influence WUE predictions based upon analysis of total soluble C. Overall, the plants appeared to use a range of mechanisms to cope with adverse conditions that could be utilised to improve plant breeding and management strategies.
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| 46. |
- Palmtag, Juri, 1980-, et al.
(author)
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Controls on the storage of organic carbon in permafrost soil in northern Siberia
- 2016
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In: European Journal of Soil Science. - : Wiley. - 1351-0754 .- 1365-2389. ; 67:4, s. 478-491
-
Journal article (peer-reviewed)abstract
- This research examined soil organic carbon (SOC), total nitrogen (TN) and aboveground phytomass carbon(PhC) stocks in two areas of the Taymyr Peninsula, northern Siberia.We combined field sampling, chemical and14C radiocarbon dating analyses with land cover classifications for landscape-level assessments. The estimatedmean for the 0–100-cm depth SOC stocks was 14.8 and 20.8 kgCm−2 in Ary-Mas and Logata, respectively. Thecorresponding values for TN were 1.0 and 1.3 kgNm−2. On average, about 2% only (range 0–12%) of the totalecosystem C is stored in PhC. In both study areas about 34% of the SOC at 0–100 cm is stored in cryoturbatedpockets, which have formed since at least the early Holocene. The larger carbon/nitrogen (C/N) ratio of thiscryoturbated material indicates that it consists of relatively undecomposed soil organic matter (SOM). Thereare substantial differences in SOC stocks and SOM properties within and between the two study areas, whichemphasizes the need to consider both geomorphology and soil texture in the assessment of landscape-level andregional SOC stocks.Highlights• This research addresses landscape-scale and regional variation in SOC stocks.• Landform and soil texture are taken into account in the analysis.• The contribution of phytomass to total ecosystem C stored is limited.• Large SOC stocks are susceptible to decomposition following permafrost thaw.
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| 47. |
- Palmtag, Juri, 1980-, et al.
(author)
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Storage, Landscape Distribution, and Burial History of Soil Organic Matter in Contrasting Areas of Continuous Permafrost
- 2015
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In: Arctic, Antarctic and Alpine research. - 1523-0430 .- 1938-4246. ; 47:1, s. 71-88
-
Journal article (peer-reviewed)abstract
- This study describes and compares soil organic matter (SOM) quantity and characteristics in two areas of continuous permafrost, a mountainous region in NE Greenland (Zackenberg study site) and a lowland region in NE Siberia (Cherskiy and Shalaurovo study sites). Our assessments are based on stratified-random landscape-level inventories of soil profiles down to 1 m depth, with physico-chemical, elemental, and radiocarbon-dating analyses. The estimated mean soil organic carbon (SOC) storage in the upper meter of soils in the NE Greenland site is 8.3 ± 1.8 kg C m-2 compared to 20.3 ± 2.2 kg C m-2 and 30.0 ± 2.0 kg C m-2 in the NE Siberian sites (95% confidence intervals). The lower SOC storage in the High Arctic site in NE Greenland can be largely explained by the fact that 59% of the study area is located at higher elevation with mostly barren ground and thus very low SOC contents. In addition, SOC-rich fens and bogs occupy a much smaller proportion of the landscape in NE Greenland (∼3%) than in NE Siberia (∼20%). The contribution of deeper buried C-enriched material in the mineral soil horizons to the total SOC storage is lower in the NE Greenland site (∼13%) compared to the NE Siberian sites (∼24%–30%). Buried SOM seems generally more decomposed in NE Greenland than in NE Siberia, which we relate to different burial mechanisms prevailing in these regions.
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| 48. |
- Quentin, Audrey G, et al.
(author)
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Non-structural carbohydrates in woody plants compared among laboratories.
- 2015
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In: Tree physiology. - : Oxford University Press (OUP). - 1758-4469 .- 0829-318X. ; 35:11, s. 1146-1165
-
Journal article (peer-reviewed)abstract
- Non-structural carbohydrates (NSC) in plant tissue are frequently quantified to make inferences about plant responses to environmental conditions. Laboratories publishing estimates of NSC of woody plants use many different methods to evaluate NSC. We asked whether NSC estimates in the recent literature could be quantitatively compared among studies. We also asked whether any differences among laboratories were related to the extraction and quantification methods used to determine starch and sugar concentrations. These questions were addressed by sending sub-samples collected from five woody plant tissues, which varied in NSC content and chemical composition, to 29 laboratories. Each laboratory analyzed the samples with their laboratory-specific protocols, based on recent publications, to determine concentrations of soluble sugars, starch and their sum, total NSC. Laboratory estimates differed substantially for all samples. For example, estimates for Eucalyptus globulus leaves (EGL) varied from 23 to 116 (mean = 56) mg g(-1) for soluble sugars, 6-533 (mean = 94) mg g(-1) for starch and 53-649 (mean = 153) mg g(-1) for total NSC. Mixed model analysis of variance showed that much of the variability among laboratories was unrelated to the categories we used for extraction and quantification methods (method category R(2) = 0.05-0.12 for soluble sugars, 0.10-0.33 for starch and 0.01-0.09 for total NSC). For EGL, the difference between the highest and lowest least squares means for categories in the mixed model analysis was 33 mg g(-1) for total NSC, compared with the range of laboratory estimates of 596 mg g(-1). Laboratories were reasonably consistent in their ranks of estimates among tissues for starch (r = 0.41-0.91), but less so for total NSC (r = 0.45-0.84) and soluble sugars (r = 0.11-0.83). Our results show that NSC estimates for woody plant tissues cannot be compared among laboratories. The relative changes in NSC between treatments measured within a laboratory may be comparable within and between laboratories, especially for starch. To obtain comparable NSC estimates, we suggest that users can either adopt the reference method given in this publication, or report estimates for a portion of samples using the reference method, and report estimates for a standard reference material. Researchers interested in NSC estimates should work to identify and adopt standard methods.
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| 49. |
- Richter, Florian, et al.
(author)
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Engineering of temperature- and light-switchable Cas9 variants
- 2016
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In: Nucleic Acids Research. - : Oxford University Press. - 0305-1048 .- 1362-4962. ; 44:20, s. 10003-10014
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Journal article (peer-reviewed)abstract
- Sensory photoreceptors have enabled non-invasive and spatiotemporal control of numerous biological processes. Photoreceptor engineering has expanded the repertoire beyond natural receptors, but to date no generally applicable strategy exists towards constructing light-regulated protein actuators of arbitrary function. We hence explored whether the homodimeric Rhodobacter sphaeroides light-oxygen-voltage (LOV) domain (RsLOV) that dissociates upon blue-light exposure can confer light sensitivity onto effector proteins, via amechanism of light-induced functional site release. We chose the RNA-guided programmable DNA endonuclease Cas9 as proof-of-principle effector, and constructed a comprehensive library of RsLOV inserted throughout the Cas9 protein. Screening with a high-throughput assay based on transcriptional repression in Escherichia coli yielded paRC9, a moderately light-activatable variant. As domain insertion can lead to protein destabilization, we also screened the library for temperature-sensitive variants and isolated tsRC9, a variant with robust activity at 29 degrees C but negligible activity at 37◦C. Biochemical assays confirmed temperature-dependent DNA cleavage and binding for tsRC9, but indicated that the light sensitivity of paRC9 is specific to the cellular setting. Using tsRC9, the first temperature-sensitive Cas9 variant, we demonstrate temperature-dependent transcriptional control over ectopic and endogenous genetic loci. Taken together, RsLOV can confer light sensitivity onto an unrelated effector; unexpectedly, the same LOV domain can also impart strong temperature sensitivity.
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| 50. |
- Richter, Florian, et al.
(author)
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Switchable Cas9
- 2017
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In: Current Opinion in Biotechnology. - : CURRENT BIOLOGY LTD. - 0958-1669 .- 1879-0429. ; 48, s. 119-126
-
Research review (peer-reviewed)abstract
- Ever since its discovery, Cas9 from Streptococcus pyogenes has revolutionized biology by enabling analysis and engineering of genomes with unprecedented precision and ease. To fine-tune on-target effects and to mitigate adverse effects caused by untimely and off-target action of Cas9, strategies have been developed to control its activity at the post-translational stage via external trigger signals. Control is either achieved by modifying the Cas9 protein itself or its programmable RNA molecules. To date, switchable Cas9 variants responding to small ligands, light or temperature have been engineered. With these variants in hand, the regulation and modification of genomes can be accomplished in graded and ever more precise manner.
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