| 1. |
- Klionsky, Daniel J., et al.
(author)
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Guidelines for the use and interpretation of assays for monitoring autophagy
- 2012
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In: Autophagy. - : Informa UK Limited. - 1554-8635 .- 1554-8627. ; 8:4, s. 445-544
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Research review (peer-reviewed)abstract
- In 2008 we published the first set of guidelines for standardizing research in autophagy. Since then, research on this topic has continued to accelerate, and many new scientists have entered the field. Our knowledge base and relevant new technologies have also been expanding. Accordingly, it is important to update these guidelines for monitoring autophagy in different organisms. Various reviews have described the range of assays that have been used for this purpose. Nevertheless, there continues to be confusion regarding acceptable methods to measure autophagy, especially in multicellular eukaryotes. A key point that needs to be emphasized is that there is a difference between measurements that monitor the numbers or volume of autophagic elements (e.g., autophagosomes or autolysosomes) at any stage of the autophagic process vs. those that measure flux through the autophagy pathway (i.e., the complete process); thus, a block in macroautophagy that results in autophagosome accumulation needs to be differentiated from stimuli that result in increased autophagic activity, defined as increased autophagy induction coupled with increased delivery to, and degradation within, lysosomes (in most higher eukaryotes and some protists such as Dictyostelium) or the vacuole (in plants and fungi). In other words, it is especially important that investigators new to the field understand that the appearance of more autophagosomes does not necessarily equate with more autophagy. In fact, in many cases, autophagosomes accumulate because of a block in trafficking to lysosomes without a concomitant change in autophagosome biogenesis, whereas an increase in autolysosomes may reflect a reduction in degradative activity. Here, we present a set of guidelines for the selection and interpretation of methods for use by investigators who aim to examine macroautophagy and related processes, as well as for reviewers who need to provide realistic and reasonable critiques of papers that are focused on these processes. These guidelines are not meant to be a formulaic set of rules, because the appropriate assays depend in part on the question being asked and the system being used. In addition, we emphasize that no individual assay is guaranteed to be the most appropriate one in every situation, and we strongly recommend the use of multiple assays to monitor autophagy. In these guidelines, we consider these various methods of assessing autophagy and what information can, or cannot, be obtained from them. Finally, by discussing the merits and limits of particular autophagy assays, we hope to encourage technical innovation in the field.
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| 2. |
- Chen, Fei'er, et al.
(author)
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The effects of PM2.5 on asthmatic and allergic diseases or symptoms in preschool children of six Chinese cities, based on China, Children, Homes and Health (CCHH) project
- 2018
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In: Environmental Pollution. - : Elsevier BV. - 0269-7491 .- 1873-6424. ; 232, s. 329-337
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Journal article (peer-reviewed)abstract
- The urbanization and industrialization in China is accompanied by bad air quality, and the prevalence of asthma in Chinese children has been increasing in recent years. To investigate the associations between ambient PM2.5 levels and asthmatic and allergic diseases or symptoms in preschool children in China, we assigned PM2.5 exposure data from the Global Burden of Disease (GBD) project to 205 kindergartens at a spatial resolution of 0.1° × 0.1° in six cities in China (Shanghai, Nanjing, Chongqing, Changsha, Urumqi, and Taiyuan). A hierarchical multiple logistical regression model was applied to analyze the associations between kindergarten-level PM2.5 exposure and individual-level outcomes of asthmatic and allergic symptoms. The individual-level variables, including gender, age, family history of asthma and allergic diseases, breastfeeding, parental smoking, indoor dampness, interior decoration pollution, household annual income, and city-level variable-annual temperature were adjusted. A total of 30,759 children (average age 4.6 years, 51.7% boys) were enrolled in this study. Apart from family history, indoor dampness, and decoration as predominant risk factors, we found that an increase of 10 μg/m3 of the annual PM2.5 was positively associated with the prevalence of allergic rhinitis by an odds ratio (OR) of 1.20 (95% confidence interval [CI] 1.11, 1.29) and diagnosed asthma by OR of 1.10 (95% CI 1.03, 1.18). Those who lived in non-urban (vs. urban) areas were exposed to more severe indoor air pollution arising from biomass combustion and had significantly higher ORs between PM2.5 and allergic rhinitis and current rhinitis. Our study suggested that long-term exposure to PM2.5 might increase the risks of asthmatic and allergic diseases or symptoms in preschool children in China. Compared to those living in urban areas, children living in suburban or rural areas had a higher risk of PM2.5 exposure.
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| 3. |
- Deng, Min, et al.
(author)
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Genome-wide association analyses in Han Chinese identify two new susceptibility loci for amyotrophic lateral sclerosis
- 2013
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In: Nature Genetics. - : Nature Publishing Group. - 1061-4036 .- 1546-1718. ; 45:6, s. 697-
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Journal article (peer-reviewed)abstract
- To identify susceptibility genes for amyotrophic lateral sclerosis (ALS), we conducted a genome-wide association study (GWAS) in 506 individuals with sporadic ALS and 1,859 controls of Han Chinese ancestry. Ninety top SNPs suggested by the current GWAS and 6 SNPs identified by previous GWAS were analyzed in an independent cohort of 706 individuals with ALS and 1,777 controls of Han Chinese ancestry. We discovered two new susceptibility loci for ALS at 1q32 (CAMK1G, rs6703183, P-combined = 2.92 x 10(-8), odds ratio (OR) = 1.31) and 22p11 (CABIN1 and SUSD2, rs8141797, P-combined = 2.35 x 10(-9), OR = 1.52). These two loci explain 12.48% of the overall variance in disease risk in the Han Chinese population. We found no association evidence for the previously reported loci in the Han Chinese population, suggesting genetic heterogeneity of disease susceptibility for ALS between ancestry groups. Our study identifies two new susceptibility loci and suggests new pathogenic mechanisms of ALS.
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| 4. |
- Hu, Jianfeng, et al.
(author)
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A general mechanism of grain growth -I. Theory
- 2021
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In: Journal of Materiomics. - : Elsevier BV. - 2352-8478 .- 2352-8486. ; 7:5, s. 1007-1013
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Journal article (peer-reviewed)abstract
- The behaviors of grain growth dominate the formation of the microstructure inside polycrystalline materials and thus strongly influence their practical performances. However, grain growth behaviors still remain ambiguous and thus lack a mathematical formula to describe the general evolution despite decades of efforts. Here, we propose a new migration model of grain boundary (GB) and further derive a mathematical expression to depict the general evolution of grain growth in the cellular structures. The expression incorporates the variables influencing growth rate (e.g. GB features, grain size and local grain size distribution) and thus reveals how the normal, abnormal and stagnant behaviors of grain growth occur in polycrystalline systems. In addition, our model correlates quantitatively GB roughening transition with grain growth behavior. The general growth theory may provide new insights into the GB thermodynamics and kinetics during the cellular structure evolution.
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| 5. |
- Klionsky, Daniel J., et al.
(author)
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Guidelines for the use and interpretation of assays for monitoring autophagy in higher eukaryotes
- 2008
-
In: Autophagy. - : Landes Bioscience. - 1554-8627 .- 1554-8635. ; 4:2, s. 151-175
-
Research review (peer-reviewed)abstract
- Research in autophagy continues to accelerate,1 and as a result many new scientists are entering the field. Accordingly, it is important to establish a standard set of criteria for monitoring macroautophagy in different organisms. Recent reviews have described the range of assays that have been used for this purpose.2,3 There are many useful and convenient methods that can be used to monitor macroautophagy in yeast, but relatively few in other model systems, and there is much confusion regarding acceptable methods to measure macroautophagy in higher eukaryotes. A key point that needs to be emphasized is that there is a difference between measurements that monitor the numbers of autophagosomes versus those that measure flux through the autophagy pathway; thus, a block in macroautophagy that results in autophagosome accumulation needs to be differentiated from fully functional autophagy that includes delivery to, and degradation within, lysosomes (in most higher eukaryotes) or the vacuole (in plants and fungi). Here, we present a set of guidelines for the selection and interpretation of the methods that can be used by investigators who are attempting to examine macroautophagy and related processes, as well as by reviewers who need to provide realistic and reasonable critiques of papers that investigate these processes. This set of guidelines is not meant to be a formulaic set of rules, because the appropriate assays depend in part on the question being asked and the system being used. In addition, we emphasize that no individual assay is guaranteed to be the most appropriate one in every situation, and we strongly recommend the use of multiple assays to verify an autophagic response.
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| 6. |
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| 7. |
- Li, Zhijun, et al.
(author)
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Multiobjective optimization for integrated tolerance allocation and fixture layout design in multistation assembly
- 2006
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In: Proceedings of the ASME International Design Engineering Technical Conferences and Computers and Information in Engineering Conference - 20. - New York : American Society of Mechanical Engineers. ; , s. 199-206
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Conference paper (peer-reviewed)abstract
- Cost and product quality are significant attributes in manufacturing processes, such as multistation assembly. We use multiobjective optimization for integrated tolerance allocation and fixture layout design to address their interaction and to quantify tradeoffs among cost, product quality, and assembly process robustness. Design decisions relate to product tolerances, assembly process tolerances, and fixture locating positions. A nested optimization strategy is adopted, and the proposed methodology is demonstrated using a vehicle side frame assembly example. The obtained results provide evidence for the existence of tradeoffs, based on which we can identify critical quality and budget requirements.
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| 8. |
- Li, Zhijun, et al.
(author)
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Multiobjective Optimization for Integrated Tolerance Allocation and Fixture Layout Design in Multistation Assembly
- 2008
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In: Journal of manufacturing science and engineering. - : ASME International. - 1087-1357 .- 1528-8935. ; 130:4, s. 0445011-0445016
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Journal article (peer-reviewed)abstract
- Cost and dimensional variation of products are significant attributes in multistation assembly processes. These attributes depend on product/process tolerances and fixture layouts. Typically, tolerance allocation and fixture layout design are conducted separately without considering potential interrelations. In this work, we use multiobjective optimization for integrated tolerance allocation and fixture layout design to address interactions and to quantify tradeoffs among cost, product variation, and assembly process sensitivity. A nested optimization strategy is applied to a vehicle side frame assembly. Results demonstrate the presence and quantification of tradeoffs, based on which we introduce the concept of critical variation and critical budget requirements
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| 9. |
- Li, Zhijun, et al.
(author)
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Product tolerance allocation in compliant multistation assembly through variation propagation and analytical target cascading
- 2004
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In: Proceedings of the ASME Design Engineering Division - 2004. - New York : American Society of Mechanical Engineers. - 0791847055 ; , s. 813-820
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Conference paper (peer-reviewed)abstract
- Compliant sheet metal assembly is a hierarchical manufacturing process that plays a significant role in automotive product development. Parts are joined in different stations to form the final product (e.g., the vehicle body structure). Dimensional variation is a product attribute of major importance that characterizes quality, and is mainly affected by the variability of parts, fixtures, and joining methods at each of the multiple stations. The propagation of dimensional variation through the multistation assembly system is modeled as a linear process, where all three aforementioned sources of variability are taken into account at each station using finite element models. In this article we apply the analytical target cascading process to the tolerance allocation problem in multistation assembly systems. Specifically, we translate final product variation targets to tolerance specifications for subassemblies and incoming parts. We demonstrate the methodology by means of a vehicle side frame assembly example.
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| 10. |
- Nieminen, Tuomo, et al.
(author)
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Global analysis of continental boundary layer new particle formation based on long-term measurements
- 2018
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In: Atmospheric Chemistry And Physics. - : Copernicus GmbH. - 1680-7316 .- 1680-7324. ; 18:19, s. 14737-14756
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Journal article (peer-reviewed)abstract
- Atmospheric new particle formation (NPF) is an important phenomenon in terms of global particle number concentrations. Here we investigated the frequency of NPF, formation rates of 10 nm particles, and growth rates in the size range of 10-25 nm using at least 1 year of aerosol number size-distribution observations at 36 different locations around the world. The majority of these measurement sites are in the Northern Hemisphere. We found that the NPF frequency has a strong seasonal variability. At the measurement sites analyzed in this study, NPF occurs most frequently in March-May (on about 30 % of the days) and least frequently in December-February (about 10 % of the days). The median formation rate of 10 nm particles varies by about 3 orders of magnitude (0.01-10 cm(-3) s(-1)) and the growth rate by about an order of magnitude (1-10 nm h(-1)). The smallest values of both formation and growth rates were observed at polar sites and the largest ones in urban environments or anthropogenically influenced rural sites. The correlation between the NPF event frequency and the particle formation and growth rate was at best moderate among the different measurement sites, as well as among the sites belonging to a certain environmental regime. For a better understanding of atmospheric NPF and its regional importance, we would need more observational data from different urban areas in practically all parts of the world, from additional remote and rural locations in North America, Asia, and most of the Southern Hemisphere (especially Australia), from polar areas, and from at least a few locations over the oceans.
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| 11. |
- Ren, Jun, et al.
(author)
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Effect of silica fume on the mechanical property and hydration characteristic of alkali-activated municipal solid waste incinerator (MSWI) fly ash
- 2021
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In: Journal of Cleaner Production. - : Elsevier BV. - 0959-6526. ; 295
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Journal article (peer-reviewed)abstract
- The incorporation of silica fume provides the solution to solve the low silica content of municipal solid waste incinerator fly ash, which hinders its utilisation in manufacturing alkali-activated solid waste incinerator fly ash. This paper reported the effect of silica fume and sodium silicate nature on the hardened properties, including compressive strength, hydration product and microstructure of alkali-activated municipal solid waste incinerator fly ash. In addition to characterising the property of municipal fly ash, the effect of silica fume in compressive strength of alkali-activated municipal solid waste incinerator fly ash under different sodium silicate dosage and modulus was investigated and its hydration products were determined by XRD and SEM. The results demonstrated that adding silica fume significantly improved the compressive strength by promoting the formation of C–S–H hydration product. Moreover, a higher sodium silicate content and modulus resulted in a higher compressive strength. The concentration of leachable heavy metals from harden specimen with 10% SF specimen was significantly reduced to the value which is much lower than the recommendation from Chinese standards.
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| 12. |
- Salvo, Gloria, et al.
(author)
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Open vs minimally invasive radical trachelectomy in early-stage cervical cancer : International Radical Trachelectomy Assessment Study
- 2022
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In: American Journal of Obstetrics and Gynecology. - : Elsevier BV. - 0002-9378 .- 1097-6868. ; 226:1, s. 1-97
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Journal article (peer-reviewed)abstract
- Background: Minimally invasive radical trachelectomy has emerged as an alternative to open radical hysterectomy for patients with early-stage cervical cancer desiring future fertility. Recent data suggest worse oncologic outcomes after minimally invasive radical hysterectomy than after open radical hysterectomy in stage I cervical cancer. Objective: We aimed to compare 4.5-year disease-free survival after open vs minimally invasive radical trachelectomy. Study Design: This was a collaborative, international retrospective study (International Radical Trachelectomy Assessment Study) of patients treated during 2005–2017 at 18 centers in 12 countries. Eligible patients had squamous carcinoma, adenocarcinoma, or adenosquamous carcinoma; had a preoperative tumor size of ≤2 cm; and underwent open or minimally invasive (robotic or laparoscopic) radical trachelectomy with nodal assessment (pelvic lymphadenectomy and/or sentinel lymph node biopsy). The exclusion criteria included neoadjuvant chemotherapy or preoperative pelvic radiotherapy, previous lymphadenectomy or pelvic retroperitoneal surgery, pregnancy, stage IA1 disease with lymphovascular space invasion, aborted trachelectomy (conversion to radical hysterectomy), or vaginal approach. Surgical approach, indication, and adjuvant therapy regimen were at the discretion of the treating institution. A total of 715 patients were entered into the study database. However, 69 patients were excluded, leaving 646 in the analysis. Endpoints were the 4.5-year disease-free survival rate (primary), 4.5-year overall survival rate (secondary), and recurrence rate (secondary). Kaplan-Meier methods were used to estimate disease-free survival and overall survival. A post hoc weighted analysis was performed, comparing the recurrence rates between surgical approaches, with open surgery being considered as standard and minimally invasive surgery as experimental. Results: Of 646 patients, 358 underwent open surgery, and 288 underwent minimally invasive surgery. The median (range) patient age was 32 (20–42) years for open surgery vs 31 (18–45) years for minimally invasive surgery (P=.11). Median (range) pathologic tumor size was 15 (0–31) mm for open surgery and 12 (0.8–40) mm for minimally invasive surgery (P=.33). The rates of pelvic nodal involvement were 5.3% (19 of 358 patients) for open surgery and 4.9% (14 of 288 patients) for minimally invasive surgery (P=.81). Median (range) follow-up time was 5.5 (0.20–16.70) years for open surgery and 3.1 years (0.02–11.10) years for minimally invasive surgery (P<.001). At 4.5 years, 17 of 358 patients (4.7%) with open surgery and 18 of 288 patients (6.2%) with minimally invasive surgery had recurrence (P=.40). The 4.5-year disease-free survival rates were 94.3% (95% confidence interval, 91.6–97.0) for open surgery and 91.5% (95% confidence interval, 87.6–95.6) for minimally invasive surgery (log-rank P=.37). Post hoc propensity score analysis of recurrence risk showed no difference between surgical approaches (P=.42). At 4.5 years, there were 6 disease-related deaths (open surgery, 3; minimally invasive surgery, 3) (log-rank P=.49). The 4.5-year overall survival rates were 99.2% (95% confidence interval, 97.6–99.7) for open surgery and 99.0% (95% confidence interval, 79.0–99.8) for minimally invasive surgery. Conclusion: The 4.5-year disease-free survival rates did not differ between open radical trachelectomy and minimally invasive radical trachelectomy. However, recurrence rates in each group were low. Ongoing prospective studies of conservative management of early-stage cervical cancer may help guide future management.
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| 13. |
- Wang, Hui, et al.
(author)
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A novel Schiff base derivative: Synthesis, two-photon absorption properties and application for bioimaging
- 2018
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In: Spectrochimica Acta Part A - Molecular and Biomolecular Spectroscopy. - : PERGAMON-ELSEVIER SCIENCE LTD. - 1386-1425 .- 1873-3557. ; 198, s. 304-308
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Journal article (peer-reviewed)abstract
- A novel donor-pi-acceptor-pi-donor type (D-pi-A-pi-D) Schiff base derivative (L) has been designed and synthesized. The structure of L is confirmed by single-crystal X-ray diffraction analysis as well. The photophysical properties of compound L were comprehensively investigated by using both experimental and theoretical methods. The results indicate that L exhibits large Stokes shift and moderate two-photon action (2PA) cross-section in the near infrared (NIR) region. Furthermore, the confocal microscopy imaging study demonstrates that compound L could penetrate into cells and target the cellular mitochondria compartment. Due to its low cytotoxicity, compound L provides a promising tool for directly lighting up the mitochondria compartment in living HepG2 cells. (C) 2018 Elsevier B.V. All rights reserved.
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| 14. |
- Wang, Hui, et al.
(author)
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A red- emissive mitochondrial probe for imaging of the viscosity in living cells
- 2019
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In: New Journal of Chemistry. - : ROYAL SOC CHEMISTRY. - 1144-0546 .- 1369-9261. ; 43:22, s. 8811-8815
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Journal article (peer-reviewed)abstract
- A novel water- soluble fluorescent probe L based on indole salts has been designed, synthesized and fully characterized. The systematic investigations demonstrated that probe L shows red emission and the fluorescence intensity is linear with the viscosity of the medium. Probe L is able to selectively accumulate in mitochondria within 1 min without any additional reagents for membrane permeabilization. It has been used to distinguish the viscosity differences between mitochondria in normal and nystatin- treated HeLa cells. In addition, due to the good photostability, probe L can be used to monitor the dynamics of mitochondria. These results support that probe L might provide a promising approach for the fluorescence detection of mitochondrial viscosity in living biological systems.
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| 15. |
- Zhang, Longbin, et al.
(author)
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Ankle Joint Torque Estimation Using an EMG-Driven Neuromusculoskeletal Model and an Artificial Neural Network Model
- 2021
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In: IEEE Transactions on Automation Science and Engineering. - : Institute of Electrical and Electronics Engineers (IEEE). - 1545-5955 .- 1558-3783. ; 18:2, s. 564-573
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Journal article (peer-reviewed)abstract
- In recent decades, there has been an increasing interest in the use of robotic powered exoskeletons to assist patients with movement disorders in rehabilitation and daily life. Providing assistive torque that compensates for the user’s remaining muscle contributions is a growing and challenging field within exoskeleton control. In this article, ankle joint torques were estimated using electromyography (EMG)-driven neuromusculoskeletal (NMS) model and an artificial neural network (ANN) model in seven movement tasks, including fast walking, slow walking, self-selected speed walking, and isokinetic dorsi/plantar flexion at 60◦/s and 90◦/s . In each method, EMG signals and ankle joint angles were used as input, the models were trained with data from 3-D motion analysis, and ankle joint torques were predicted. Six cases using different motion trials as calibration (for the NMS model)/training (for the ANN) were devised, and the agreement between the predicted and measured ankle joint torques was computed. We found that the NMS model could overall better predict ankle joint torques from EMG and angle data than the ANN model with some exceptions; the ANN predicted ankle joint torques with better agreement when trained with data from the same movement. The NMS model predicted ankle joint torque best when calibrated with trials during which EMG reached maximum levels, whereas the ANN predicted well when trained with many trials and types of movements. In addition, the ANN prediction may become less reliable when predicting unseen movements. Detailed comparative studies of methods to predict ankle joint torque are crucial for determining strategies for exoskeleton control. Note to Practitioners—In exoskeleton control for strength augmentation applied in military, industry, and healthcare applications, providing assistive torque that compensates for the user’s remaining muscle contributions, is a challenging problem. This article predicted the ankle joint torques by electromyography (EMG)-driven neuromusculoskeletal (NMS) model and an artificial neural network (ANN) model in different movements. To the best of our knowledge, this is the first study comparing joint torque prediction performance of EMG-driven model to ANN. In the EMG-driven NMS model, mathematical equations were formulated to reproduce the transformations from EMG signal generation and joint angles to musculotendon forces and joint torques. A three-layer ANN was constructed with an adaptive moment estimation (Adam) optimization method to learn the relationships between the inputs (EMG signals and joint angles) and the outputs (joint torques). In the experiments, we estimated ankle joint torques in gait and isokinetic movements and compared the performance of methods to predict ankle joint torque, relating to how the methods have been calibrated/trained. The detailed analysis of the methods’ performance in predicting ankle joint torque can significantly contribute to determining which model to choose, and under which circumstances, and, thus, be of great benefit for exoskeleton rehabilitation controller design.
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| 16. |
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