1. |
- Abazov, V. M., et al.
(author)
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The upgraded DO detector
- 2006
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In: Nuclear Instruments and Methods in Physics Research Section A. - : Elsevier BV. - 0168-9002 .- 1872-9576. ; 565:2, s. 463-537
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Journal article (peer-reviewed)abstract
- The DO experiment enjoyed a very successful data-collection run at the Fermilab Tevatron collider between 1992 and 1996. Since then, the detector has been upgraded to take advantage of improvements to the Tevatron and to enhance its physics capabilities. We describe the new elements of the detector, including the silicon microstrip tracker, central fiber tracker, solenoidal magnet, preshower detectors, forward muon detector, and forward proton detector. The uranium/liquid -argon calorimeters and central muon detector, remaining from Run 1, are discussed briefly. We also present the associated electronics, triggering, and data acquisition systems, along with the design and implementation of software specific to DO.
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2. |
- Ablikim, M., et al.
(author)
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Measurements of (XcJ)-> K+K-K+K- decays
- 2006
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In: Physics Letters B. - : Elsevier BV. - 0370-2693 .- 1873-2445. ; 642:3, s. 197-202
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Journal article (peer-reviewed)abstract
- Using 14M psi(2S) events taken with the BESII detector, chi(cJ) -> 2(K+K-) decays are studied. For the four-kaon final state, the branching fractions are B(chi(c0,1,2) ->.2(K+K-)) = (3.48 +/- 0.23 +/- 0.47) x 10(-3), (0.70 +/- 0.13 +/- 0.10) x 10(-3), and (2.17 +/- 0.20 +/- 0.31) x 10(-3). For the phi K+K- final state, the branching fractions, which are measured for the first time, are B(chi(c0,1,2) -> phi K+K-) = (1.03 +/- 0.22 +/- 0.15) x 10(-3), (0.46 +/- 0.16 +/- 0.06) x 10(-3), and (1.67 +/- 0.26 +/- 0.24) x 10(-4). For the phi phi final state, B(chi(c0,2) -> phi phi) = (0.94 +/- 0.21 +/- 0.13) x 10(-3) and (1.70 +/- 0.30 +/- 0.25) x 10(-3).
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3. |
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4. |
- Adolph, C, et al.
(author)
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Measurement of the eta -> 3 pi(0) Dalitz plot distribution with the WASA detector at COSY
- 2009
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In: Physics Letters B. - : Elsevier BV. - 0370-2693 .- 1873-2445. ; 677:1-2, s. 24-29
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Journal article (peer-reviewed)abstract
- In the first production run of the WASA experiment at COSY, the eta decay into three neutral pions was measured in proton-proton interactions at a proton beam kinetic energy of 1.4 GeV. The Dalitz plot of the three pious was Studied using 1.2 x 10(5) fully reconstructed events. and the quadratic slope parameter alpha was determined to be -0.027 +/- 0.008(stat) +/- 0.005(syst). The result is consistent with previous measurements and further corroborates the importance of pion-pion final state interactions. (C) 2009 Elsevier B.V. All rights reserved.
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5. |
- Sodergren, Erica, et al.
(author)
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The genome of the sea urchin Strongylocentrotus purpuratus.
- 2006
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In: Science. - : American Association for the Advancement of Science (AAAS). - 1095-9203 .- 0036-8075. ; 314:5801, s. 941-52
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Journal article (peer-reviewed)abstract
- We report the sequence and analysis of the 814-megabase genome of the sea urchin Strongylocentrotus purpuratus, a model for developmental and systems biology. The sequencing strategy combined whole-genome shotgun and bacterial artificial chromosome (BAC) sequences. This use of BAC clones, aided by a pooling strategy, overcame difficulties associated with high heterozygosity of the genome. The genome encodes about 23,300 genes, including many previously thought to be vertebrate innovations or known only outside the deuterostomes. This echinoderm genome provides an evolutionary outgroup for the chordates and yields insights into the evolution of deuterostomes.
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6. |
- Birney, Ewan, et al.
(author)
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Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
- 2007
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In: Nature. - : Springer Science and Business Media LLC. - 0028-0836 .- 1476-4687. ; 447:7146, s. 799-816
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Journal article (peer-reviewed)abstract
- We report the generation and analysis of functional data from multiple, diverse experiments performed on a targeted 1% of the human genome as part of the pilot phase of the ENCODE Project. These data have been further integrated and augmented by a number of evolutionary and computational analyses. Together, our results advance the collective knowledge about human genome function in several major areas. First, our studies provide convincing evidence that the genome is pervasively transcribed, such that the majority of its bases can be found in primary transcripts, including non-protein-coding transcripts, and those that extensively overlap one another. Second, systematic examination of transcriptional regulation has yielded new understanding about transcription start sites, including their relationship to specific regulatory sequences and features of chromatin accessibility and histone modification. Third, a more sophisticated view of chromatin structure has emerged, including its inter-relationship with DNA replication and transcriptional regulation. Finally, integration of these new sources of information, in particular with respect to mammalian evolution based on inter- and intra-species sequence comparisons, has yielded new mechanistic and evolutionary insights concerning the functional landscape of the human genome. Together, these studies are defining a path for pursuit of a more comprehensive characterization of human genome function.
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7. |
- Kelly, J. J., et al.
(author)
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Recoil polarization measurements for neutral pion electroproduction at Q(2)=1(GeV/c)(2) near the Delta resonance
- 2007
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In: Physical Review C (Nuclear Physics). - 0556-2813. ; 75:2
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Journal article (peer-reviewed)abstract
- We measured angular distributions of differential cross section, beam analyzing power, and recoil polarization for neutral pion electroproduction at Q(2)=1.0 (GeV/c)(2) in 10 bins of 1.17 <= W <= 1.35 GeV across the Delta resonance. A total of 16 independent response functions were extracted, of which 12 were observed for the first time. Comparisons with recent model calculations show that response functions governed by real parts of interference products are determined relatively well near the physical mass, W=M-Delta approximate to 1.232 GeV, but the variation among models is large for response functions governed by imaginary parts, and for both types of response functions, the variation increases rapidly with W > M-Delta. We performed a multipole analysis that adjusts suitable subsets of center dot(pi)<= 2 amplitudes with higher partial waves constrained by baseline models. This analysis provides both real and imaginary parts. The fitted multipole amplitudes are nearly model independent-there is very little sensitivity to the choice of baseline model or truncation scheme. By contrast, truncation errors in the traditional Legendre analysis of N ->Delta quadrupole ratios are not negligible. Parabolic fits to the W dependence around M-Delta for the multiple analysis gives values for Re(S1+/M1+)=(-6.61 +/- 0.18)% and Re(E1+/M1+)=(-2.87 +/- 0.19)% for the p pi(0) channel at W=1.232 GeV and Q(2)=1.0 (GeV/c)(2) that are distinctly larger than those from the Legendre analysis of the same data. Similarly, the multipole analysis gives Re(S0+/M1+)=(+7.1 +/- 0.8)% at W=1.232 GeV, consistent with recent models, while the traditional Legendre analysis gives the opposite sign because its truncation errors are quite severe.
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8. |
- Boyle, P, et al.
(author)
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Need for global action for cancer control
- 2008
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In: Annals of oncology : official journal of the European Society for Medical Oncology. - : Elsevier BV. - 1569-8041. ; 19:9, s. 1519-1521
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Journal article (other academic/artistic)
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11. |
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12. |
- Zhu, L Y, et al.
(author)
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Cross section measurements of charged pion photoproduction in hydrogen and deuterium from 1.1 to 5.5 GeV
- 2005
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In: Physical Review C (Nuclear Physics). - 0556-2813. ; 71:4
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Journal article (peer-reviewed)abstract
- The differential cross sections for the gamma n ->pi(-)p and the gamma p ->pi(+)n processes were measured at Jefferson Lab. The photon energies ranged from 1.1 to 5.5 GeV, corresponding to center-of-mass energies from 1.7 to 3.4 GeV. The pion center-of-mass angles varied from 50(degrees) to 110(degrees). The pi(-) and pi(+) photoproduction data both exhibit a global scaling behavior at high energies and high transverse momenta, consistent with the constituent counting rule prediction and the existing pi(+) data. The data suggest possible substructure of the scaling behavior, which might be oscillations around the scaling value. The data show an enhancement in the scaled cross section at center-of-mass energy near 2.2 GeV. The differential cross section ratios [d sigma/dt(gamma n ->pi(-)p)/d sigma/dt(gamma p ->pi(+)n)] at high energies and high transverse momenta can be described by calculations based on one-hard-gluon-exchange diagrams.
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14. |
- He, G. S., et al.
(author)
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Multifocus Structures of Ultrashort Self-Focusing Laser Beam Observed in a Three-Photon Fluorescent Medium
- 2009
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In: IEEE Journal of Quantum Electronics. - : Institute of Electrical and Electronics Engineers (IEEE). - 0018-9197 .- 1558-1713. ; 45:7, s. 816-824
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Journal article (peer-reviewed)abstract
- Self-focusing effect and multifocus structures of an ultrashort (similar to 160-fs) pulsed laser beam of similar to 1.3-mu m wavelength are investigated in several organic liquids. The intensity-dependent self-focusing formation and multifocus structures of the infrared (IR) laser beam were directly observed in a three-photon active fluorescent dye solution cell, in which a high contrast image of the spatial structure of the self-focusing beam can be obtained due to the cubic dependence of the fluorescence intensity on the local IR laser intensity. By combining this dye solution cell with another cell filled with various transparent organic liquids, the contributions of these tested liquids to the observed self-focusing effect are elucidated. The numerical simulations for this type of self-focusing behavior are presented, based on the assumption that the major contribution to the observed self-focusing is the nonlinear refractive-index change of the solvent due to electronic-cloud distortion. The simulation results are in fairly good agreement with the experimental results.
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15. |
- Zheng, P., et al.
(author)
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Two-dimensional finite element method simulation of a four-quadrant transducer prototype machine considering skewed slots
- 2006
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In: Journal of Applied Physics. - : AIP Publishing. - 0021-8979 .- 1089-7550. ; 99:8
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Journal article (peer-reviewed)abstract
- A four-quadrant transducer (4QT) electric machine is an integrated electric machine used for hybrid electric vehicles. In this article a 4QT prototype machine that is radially integrated by two permanent-magnet synchronous machines is analyzed. Skewed slots are adopted for the two machines, and the multislice two-dimensional time-stepping finite element method is used to calculate the performance. The dividing method of the 4QT, the choice of calculated cutplanes and the determination of the number of slices are discussed. The no-load and load performance of the 4QT are calculated. The 4QT prototype machine was tested. The tested no-load line-to-line back electromotive force curves are in good agreement with the calculated ones, which verifies the feasibility of the proposed method.
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16. |
- Amundadottir, Laufey, et al.
(author)
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Genome-wide association study identifies variants in the ABO locus associated with susceptibility to pancreatic cancer.
- 2009
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In: Nature Genetics. - : Springer Science and Business Media LLC. - 1061-4036 .- 1546-1718. ; 41, s. 986-990
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Journal article (peer-reviewed)abstract
- We conducted a two-stage genome-wide association study of pancreatic cancer, a cancer with one of the lowest survival rates worldwide. We genotyped 558,542 SNPs in 1,896 individuals with pancreatic cancer and 1,939 controls drawn from 12 prospective cohorts plus one hospital-based case-control study. We conducted a combined analysis of these groups plus an additional 2,457 affected individuals and 2,654 controls from eight case-control studies, adjusting for study, sex, ancestry and five principal components. We identified an association between a locus on 9q34 and pancreatic cancer marked by the SNP rs505922 (combined P = 5.37 x 10(-8); multiplicative per-allele odds ratio 1.20; 95% confidence interval 1.12-1.28). This SNP maps to the first intron of the ABO blood group gene. Our results are consistent with earlier epidemiologic evidence suggesting that people with blood group O may have a lower risk of pancreatic cancer than those with groups A or B.
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17. |
- Berglund, Birgitta, et al.
(author)
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Measuring odor quality of building materials in an odor space
- 2009
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In: Fechner Day 2009. - Galway, Irland : International Society for Psychophysics. ; , s. 221-226
-
Conference paper (other academic/artistic)abstract
- We can discriminate a huge number of odors. Still, the perceptual mechanisms responsible for perceived odor quality is not well understood. The research goal was to define an odor reference space that may represent indoor air quality. Two observers scaled the perceived similarity of discernable emissions of all possible pairs of 30 building materials. Combined cluster and component analyses were used for identifying 12 potential odor references enabling a preliminary definition of the odor space. This odor space was partially validated and improved by individual differences scaling (INDSCAL) of seven observers’ similarity matrices of odor qualities including 27 of the 30 building materials. Grounded in 13 odor references, a three-dimensional measurement space is provided for odor quality of building materials emissions and potentially also for the indoor air quality of non-industrial buildings.
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20. |
- Duggan, D., et al.
(author)
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Two genome-wide association studies of aggressive prostate cancer implicate putative prostate tumor suppressor gene DAB2IP
- 2007
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In: Journal of the National Cancer Institute. - : Oxford University Press (OUP). - 0027-8874 .- 1460-2105. ; 99:24, s. 1836-1844
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Journal article (peer-reviewed)abstract
- Background: The consistent finding of a genetic susceptibility to prostate cancer suggests that there are germline sequence variants predisposing individuals to this disease. These variants could be useful in screening and treatment. Methods: We performed an exploratory genome-wide association scan in 498 men with aggressive prostate cancer and 494 control subjects selected from a population-based case-control study in Sweden. We combined the results of this scan with those for aggressive prostate cancer from the publicly available Cancer Genetic Markers of Susceptibility (CGEMS) Study. Single-nucleotide polymorphisms (SNPs) that showed statistically significant associations with the risk of aggressive prostate cancer based on two-sided allele tests were tested for their association with aggressive prostate cancer in two independent study populations composed of individuals of European or African American descent using one-sided tests and the genetic model (dominant or additive) associated with the lowest value in the exploratory study. Results: Among the approximately 60000 SNPs that were common to our study and CGEMS, we identified seven that had a similar (positive or negative) and statistically significant (P<.01) association with the risk of aggressive prostate cancer in both studies. Analysis of the distribution of these SNPs among 1032 prostate cancer patients and 571 control subjects of European descent indicated that one, rs1571801, located in the DAB2IP gene, which encodes a novel Ras GTPase-activating protein and putative prostate tumor suppressor, was associated with aggressive prostate cancer (one-sided P value =. 004). The association was also statistically significant in an African American study population that included 210 prostate cancer patients and 346 control subjects (one-sided P value =. 02). Conclusion: A genetic variant in DAB2IP may be associated with the risk of aggressive prostate cancer and should be evaluated further.
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22. |
- Fisher, D., et al.
(author)
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The Mt Logan Holocene-late Wisconsinan isotope record : Tropical Pacific-Yukon connections
- 2008
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In: Holocene. - : SAGE Publications. ; 18:5, s. 667-677
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Journal article (peer-reviewed)abstract
- The ice core recovered from Prospector Russell Col on Mt Logan (5.4 km a.s.l.), in the Yukon spans over 20 000 years. This unique record offers a Pacific view of the stable isotope and chemical record from the Lateglacial to the present. The timescale is based on seasonal counted years, the largest known volcanic acid signatures and the major shift in stable isotopes and chemistry at the end of the Younger Dryas. There are large and sustained changes in the stable isotopic record that are anti-correlated with marine and continental chemistry series. The oxygen-18 in this area is not a proxy for palaeotemperature but rather for source region. The last major isotope shift in AD 1840 in δ(18O) and chemistry is compared with the Quinn's ENSO record. During periods of more frequent La Niña (stronger tropical easterlies) there is more zonal flow of water vapour transport to the Pacific Northwest, δ(18O) values are larger and the deuterium excess d smaller. These periods coincide with periods of lower accumulation/precipitation in southern Yukon. The Holocene δ(18O) record indicates many large shifts between the meridional (strong El Niño) and zonal (La Niña). Comparison of the Logan isotopic record and the moisture/temperature-sensitive time series of peat bog inception dates for the Northwest shows a strong correlation (0.36) that points to high accumulation rates coincident with low δ(18O) and enhanced meridional flow. Major changes in the core at 4200 BP and 7000—8000 BP point to enhanced meridional flow, which coincide with big changes in the Pacific palaeorecords of the balance between El Niño and La Niña. 4200 BP seems to have inaugurated the `modern' ENSO world.
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24. |
- He, G. S., et al.
(author)
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Stimulated Rayleigh-Bragg Scattering From a Two-Photon Absorbing CdSe-CdS-ZnS Quantum-Rods System : Optical Power Limiting and Phase-Conjugation
- 2008
-
In: IEEE Journal of Quantum Electronics. - : Institute of Electrical and Electronics Engineers (IEEE). - 0018-9197 .- 1558-1713. ; 44:9-10, s. 894-901
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Journal article (peer-reviewed)abstract
- This work reports the properties of stimulated Rayleigh-Bragg scattering (SRBS) from a two-photon absorbing CdSe-Cds-ZnS quantum-rods (QRs) solution in chloroform, excited by 1064-nm and similar to 13-ns laser pulses. The two-photon absorbing capability of the scattering medium, as well as the pump threshold, spectral structure, and pulse waveforms of the backward stimulated scattering were measured. Comparing to a pure solvent or an organic dye-solution, the semiconductor QR system has many advantages such as the lower pump threshold, higher energy transfer efficiency, and better photo-physical and photo-chemical stability. The measured output/input characteristic curve shows that the backward SRBS can enhance the optical power limiting performance that is based on two-photon absorption, backward stimulated scattering, and other nonlinear absorption mechanisms. In addition, the backward SRBS beam from our sample medium exhibits a fairly good optical phase-conjugation capability, so that the distortion influence from an inserted aberrator can be automatically removed.
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26. |
- Kessler, Richard, et al.
(author)
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First-Year Sloan Digital Sky Survey-II Supernova Results : Hubble Diagram and Cosmological Parameters
- 2009
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In: Astrophysical Journal Supplement Series. - : American Astronomical Society. - 0067-0049 .- 1538-4365. ; 185:1, s. 32-84
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Journal article (peer-reviewed)abstract
- We present measurements of the Hubble diagram for 103 Type Ia supernovae (SNe) with redshifts 0.04 < z < 0.42, discovered during the first season (Fall 2005) of the Sloan Digital Sky Survey-II (SDSS-II) Supernova Survey. These data fill in the redshift "desert" between low- and high-redshift SN Ia surveys. Within the framework of the MLCS2K2 light-curve fitting method, we use the SDSS-II SN sample to infer the mean reddening parameter for host galaxies, RV = 2.18 ± 0.14stat ± 0.48syst, and find that the intrinsic distribution of host-galaxy extinction is well fitted by an exponential function, P(AV ) = exp(-AV /τV), with τV = 0.334 ± 0.088 mag. We combine the SDSS-II measurements with new distance estimates for published SN data from the ESSENCE survey, the Supernova Legacy Survey (SNLS), the Hubble Space Telescope (HST), and a compilation of Nearby SN Ia measurements. A new feature in our analysis is the use of detailed Monte Carlo simulations of all surveys to account for selection biases, including those from spectroscopic targeting. Combining the SN Hubble diagram with measurements of baryon acoustic oscillations from the SDSS Luminous Red Galaxy sample and with cosmic microwave background temperature anisotropy measurements from the Wilkinson Microwave Anisotropy Probe, we estimate the cosmological parameters w and ΩM, assuming a spatially flat cosmological model (FwCDM) with constant dark energy equation of state parameter, w. We also consider constraints upon ΩM and ΩΛ for a cosmological constant model (ΛCDM) with w = -1 and non-zero spatial curvature. For the FwCDM model and the combined sample of 288 SNe Ia, we find w = -0.76 ± 0.07(stat) ± 0.11(syst), ΩM = 0.307 ± 0.019(stat) ± 0.023(syst) using MLCS2K2 and w = -0.96 ± 0.06(stat) ± 0.12(syst), ΩM = 0.265 ± 0.016(stat) ± 0.025(syst) using the SALT-II fitter. We trace the discrepancy between these results to a difference in the rest-frame UV model combined with a different luminosity correction from color variations; these differences mostly affect the distance estimates for the SNLS and HST SNe. We present detailed discussions of systematic errors for both light-curve methods and find that they both show data-model discrepancies in rest-frame U band. For the SALT-II approach, we also see strong evidence for redshift-dependence of the color-luminosity parameter (β). Restricting the analysis to the 136 SNe Ia in the Nearby+SDSS-II samples, we find much better agreement between the two analysis methods but with larger uncertainties: w = -0.92 ± 0.13(stat)+0.10 -0.33(syst) for MLCS2K2 and w = -0.92 ± 0.11(stat)+0.07 -0.15 (syst) for SALT-II.
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27. |
- Klionsky, Daniel J., et al.
(author)
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Guidelines for the use and interpretation of assays for monitoring autophagy in higher eukaryotes
- 2008
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In: Autophagy. - : Landes Bioscience. - 1554-8627 .- 1554-8635. ; 4:2, s. 151-175
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Research review (peer-reviewed)abstract
- Research in autophagy continues to accelerate,1 and as a result many new scientists are entering the field. Accordingly, it is important to establish a standard set of criteria for monitoring macroautophagy in different organisms. Recent reviews have described the range of assays that have been used for this purpose.2,3 There are many useful and convenient methods that can be used to monitor macroautophagy in yeast, but relatively few in other model systems, and there is much confusion regarding acceptable methods to measure macroautophagy in higher eukaryotes. A key point that needs to be emphasized is that there is a difference between measurements that monitor the numbers of autophagosomes versus those that measure flux through the autophagy pathway; thus, a block in macroautophagy that results in autophagosome accumulation needs to be differentiated from fully functional autophagy that includes delivery to, and degradation within, lysosomes (in most higher eukaryotes) or the vacuole (in plants and fungi). Here, we present a set of guidelines for the selection and interpretation of the methods that can be used by investigators who are attempting to examine macroautophagy and related processes, as well as by reviewers who need to provide realistic and reasonable critiques of papers that investigate these processes. This set of guidelines is not meant to be a formulaic set of rules, because the appropriate assays depend in part on the question being asked and the system being used. In addition, we emphasize that no individual assay is guaranteed to be the most appropriate one in every situation, and we strongly recommend the use of multiple assays to verify an autophagic response.
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31. |
- Liu, R., et al.
(author)
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Investigation of a compound-structure permanent-magnet synchronous machine used for HEVs
- 2008
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In: 2008 IEEE Vehicle Power and Propulsion Conference, VPPC 2008. - 9781424418497
-
Conference paper (peer-reviewed)abstract
- A compound-structure permanent-magnet synchronous machine (CS-PMSM) system used for hybrid electric vehicles (HEVs) has great potential to improve fuel economy and reduce emissions, and has less structural complexity, weight and cost compared to the ones in the commercialized HEVs. In this paper the CS-PMSM system is simulated within ADVISOR and compared to the Toyota Hybrid System (THS), which indicates great potential to become one of the best hybrid systems. Further, a prototype machine of the CS-PMSM was designed and manufactured, and the analysis is carried out based on the results of the FEM calculations and experiments. The special problem of magnetic coupling, thermal property, and efficiency improvement are investigated, respectively, which provides a reference for the potential application.
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34. |
- Newman, S.T., et al.
(author)
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Strategic Advantages of Interoperability for Global Manufacturing Using CNC Technology
- 2008
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In: Robotics and Computer-Integrated Manufacturing. - : Elsevier BV. - 0736-5845 .- 1879-2537. ; 24:6, s. 699-708
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Journal article (peer-reviewed)abstract
- In the domain of manufacturing, computer numerically controllers (CNC) technology is a major contributor to the production capacity of the enterprises. The advances in CNC technology coupled with enhancements ill computing systems have provided the basis to re-examine the way in which computer-aided systems (CAx) call be used to enable global manufacturing. Interoperability of the various components of the CAx chain is therefore a major prerequisite for manufacturing enterprises for becoming strategically agile and consequently globally competitive. Being interoperable, resources call be utilized interchangeably in a plug-and-produce manner. Over the last 8 years the eminence of a STEP standard for machining entitled STEP-NC (numerical control) has become a well-known vehicle for research to improve the level of information availability at the CNC machine too]. Ill this paper, the authors introduce the background to the evolution of CNC manufacturing over the last 50 years and the Current standards available for programming. A review of the literature in interoperable CNC Manufacturing is then provided relating to Milling, turn-mill and other NC processes. The major part of the paper provides a strategic view of]low interoperability call be implemented across the CAx chain with a range of standards used to regulate the flow of information. Finally, the paper Outlines the advantages and major issues for future developments in interoperability, identifying future key requirements and limiting factors.
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35. |
- Nordborg, M, et al.
(author)
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The pattern of polymorphism in Arabidopsis thaliana
- 2005
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In: PLoS Biology. - : Public Library of Science (PLoS). - 1545-7885. ; 3:7, s. 1289-1299
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Journal article (peer-reviewed)abstract
- We resequenced 876 short fragments in a sample of 96 individuals of Arabidopsis thaliana that included stock center accessions as well as a hierarchical sample from natural populations. Although A. thaliana is a selfing weed, the pattern of polymorphism in general agrees with what is expected for a widely distributed, sexually reproducing species. Linkage disequilibrium decays rapidly, within 50 kb. Variation is shared worldwide, although population structure and isolation by distance are evident. The data fail to fit standard neutral models in several ways. There is a genome-wide excess of rare alleles, at least partially due to selection. There is too much variation between genomic regions in the level of polymorphism. The local level of polymorphism is negatively correlated with gene density and positively correlated with segmental duplications. Because the data do not fit theoretical null distributions, attempts to infer natural selection from polymorphism data will require genome-wide surveys of polymorphism in order to identify anomalous regions. Despite this, our data support the utility of A. thaliana as a model for evolutionary functional genomics.
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36. |
- Ohtani, S., et al.
(author)
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Cluster observations in the inner magnetosphere during the 18 April 2002 sawtooth event : Dipolarization and injection at r=4.6 R-E
- 2007
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In: Journal of Geophysical Research. - : American Geophysical Union (AGU). - 0148-0227 .- 2156-2202. ; 112:A8
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Journal article (peer-reviewed)abstract
- The present study examines a sawtooth injection event that took place around 0800 UT on 18 April 2002 when the Cluster spacecraft were located in the inner magnetosphere in the premidnight sector. In association with this injection, Cluster, at a radial distance of 4.6 RE, observed that the local magnetic field became more dipolar and that both ion and electron fluxes increased without notable energy dispersion. These features were accompanied by intensifications of the equatorward component of a double- oval structure and also by an enhancement of the ring- current oxygen ENA flux. The event was also accompanied by large magnetic field ( a few tens of nT) and electric field ( a few tens of mV/ m) fluctuations with characteristic timescales of a few tens of seconds. These observations strongly suggest that this sawtooth injection extended not only widely in local time but also deeply into the inner magnetosphere. Interestingly, Cluster repeatedly observed dipolarization- like signatures afterward, which, however, were not associated with enhancements of local energetic ion flux or with geosynchronous dipolarization or injection signatures. Instead, these magnetic signatures were accompanied by oscillatory plasma motion in the radial direction with a characteristic timescale of about 10 min, which appears to be related to the westward propagation of a spatially periodic auroral structure. The associated azimuthal electric field component was well correlated with the time derivative of the north- south magnetic field component, suggesting that the observed electric field is inductive. These findings suggest that electromagnetic processes far inside geosynchronous orbit play an important role in energization of energetic ions and auroral dynamics during magnetospheric storms.
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41. |
- Singh, A K, et al.
(author)
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CFTR and its key role in in vivo resting and luminal acid-induced duodenal HCO3-secretion
- 2008
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In: Acta Physiologica. - : Wiley. - 1748-1708 .- 1748-1716. ; 193:4, s. 357-365
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Journal article (peer-reviewed)abstract
- Background and aims: We investigated the role of the recently discovered, villous-expressed anion exchanger Slc26a6 (PAT1) and the predominantly crypt-expressed cystic fibrosis transmembrane regulator (CFTR) in basal and acid-stimulated murine duodenal HCO3− secretion in vivo, and the influence of blood HCO3− concentration on both.Methods: The proximal duodenum of anaesthetized mice was perfused in situ, and HCO3− secretion was determined by back-titration. Duodenal mucosal permeability was assessed by determining 51Cr-EDTA leakage from blood to lumen.Results: Compared with wild type (WT) littermates basal duodenal HCO3− secretory rates were slightly reduced in Slc26-deficient mice at low (∼21 mm), and markedly reduced at high blood HCO3− concentration (∼29 mm). In contrast, basal HCO3− secretion was markedly reduced in CFTR-deficient mice compared with WT littermates both at high and low blood HCO3− concentration. A short-term application of luminal acid increased duodenal HCO3− secretory rate in Slc26a6-deficient and WT mice to the same degree, but had no stimulatory effect in the absence of CFTR. Luminal acidification to pH 2.5 did not alter duodenal permeability.Conclusions: The involvement of Slc26a6 in basal HCO3− secretion in murine duodenum in vivo is critically dependent on the systemic acid/base status, and this transporter is not involved in acid-stimulated HCO3− secretion. The presence of CFTR is essential for basal and acid-induced HCO3− secretion irrespective of acid/base status. This suggests a coupled action of Slc26a6 with CFTR for murine basal duodenal HCO3− secretion, but not acid-stimulated secretion, in vivo.
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- Zheng, P, et al.
(author)
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Influence of saturation and saliency on the inductance of a four-quadrant transducer prototype machine
- 2006
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In: IEEE transactions on magnetics. - 0018-9464 .- 1941-0069. ; 42:4, s. 1319-1322
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Journal article (peer-reviewed)abstract
- An inductance determination method that can be based on both experiments and calculations is discussed in this paper. The inductances of a four-quadrant transducer (4QT) prototype machine were measured and calculated with the two-dimensional time-stepping finite-element method (FEM), and the measured and calculated results are in good agreement. It is found that the d- and q-axis inductances are different, and the inductances obtained from the phase and line voltage are also different for both the two machines of the 4QT prototype machine. Analysis shows that the differences are caused by the saliency and d-axis saturation. Although there is little saliency for the double rotor machine (DRM), the two kinds of the inductance differences of the DRM are more serious than that of the stator machine (SM). This is because of the higher level of the d-axis saturation of the DRM. The inductances obtained from the phase voltage at very low frequency are recommended as final results for both experiments and calculations.
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45. |
- Zheng, P., et al.
(author)
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Investigation of the winding current distribution in a 4-quadrant-transducer prototype machine
- 2005
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In: IEEE transactions on magnetics. - 0018-9464 .- 1941-0069. ; 41:5, s. 1972-1975
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Journal article (peer-reviewed)abstract
- The 4-quadrant energy transducer (4QT) is a solution to realize both the torque and speed control of the internal combustion engine (ICE) for hybrid electric vehicles. Since the base frequency of the prototype 4QT is much higher than the industrial one, the effect of eddy current on winding current distribution is considered in this paper. A two-dimensional (2-D) eddy-current FEM model is established and used for analysis. Current density and strand current distribution are given. It is pointed out that owing to the effect of eddy current, the conductor currents are unevenly distributed within the strands of the same turn. According to the 2-D FEM analysis, when the uneven current distribution is considered, the average rms turn current is increased by 1.05 times for the stator and 1.65 times for the inner rotor, and the copper loss is increased by 1.1 times for the stator and 3.16 times for the inner rotor. Since the inner rotor slots are much deeper than the stator slots, the inner rotor current distribution is more uneven than the stator. It means that for high-frequency deep slot machine the eddy current effect should be considered seriously. Because of the increased current and copper loss, more ventilation will be needed for the 4QT, especially for the inner rotor. The average torques of stator machine and double rotor machine meet the requirements, and the torque ripples are small owing to the skewed slots.
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- Zheng, Wen, et al.
(author)
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Hypoxia inducible factor-1 (HIF-1)-mediated repression of cystic fibrosis transmembrane conductance regulator (CFTR) in the intestinal epithelium.
- 2009
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In: The FASEB journal : official publication of the Federation of American Societies for Experimental Biology. - : Wiley. - 1530-6860. ; 23:1, s. 204-213
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Journal article (peer-reviewed)abstract
- Diarrhea is widespread in intestinal diseases involving ischemia and/or hypoxia. Since hypoxia alters stimulated Cl(-) and water flux, we investigated the influence of such a physiologically and pathophysiologically important signal on expression of the cystic fibrosis transmembrane conductance regulator (CFTR). Located on the apical membrane, this cAMP-activated Cl(-) channel determines salt and fluid transport across mucosal surfaces. Our studies revealed depression of CFTR mRNA, protein, and function in hypoxic epithelia. Chromatin immunoprecipitation identified a previously unappreciated binding site for the hypoxia inducible factor-1 (HIF-1), and promoter studies established its relevance by loss of repression following point mutation. Consequently, HIF-1 overexpressing cells exhibited significantly reduced transport capacity in colorimetric Cl(-) efflux studies, altered short circuit measurements, and changes in transepithelial fluid movement. Whole-body hypoxia in wild-type mice resulted in significantly reduced small intestinal fluid and HCO(3)(-) secretory responses to forskolin. Experiments performed in Cftr(-/-) and Nkcc1(-/-) mice underlined the role of altered CFTR expression for these functional changes, and work in conditional Hif1a mutant mice verified HIF-1-dependent CFTR regulation in vivo. In summary, our study clarifies CFTR regulation and introduces the concept of a HIF-1-orchestrated response designed to regulate ion and fluid movement across hypoxic intestinal epithelia.
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