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- Nelson, RonaldSwedish University of Agricultural Sciences,Sveriges lantbruksuniversitet,Institutionen för husdjursgenetik (HGEN),Department of Animal Breeding and Genetics (author)
qtl.outbred: Interfacing outbred line cross data with the R/qtl mapping software
- Article/chapterEnglish2011
Publisher, publication year, extent ...
- 2011-05-26
- BioMed Central,2011
- electronicrdacarrier
Numbers
- LIBRIS-ID:oai:DiVA.org:du-10641
- https://urn.kb.se/resolve?urn=urn:nbn:se:du-10641URI
- https://doi.org/10.1186/1756-0500-4-154DOI
- https://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-294230URI
- https://res.slu.se/id/publ/35257URI
- https://res.slu.se/id/publ/37422URI
- https://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-170087URI
Supplementary language notes
- Language:English
- Summary in:English
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- SwePubSwePub
Classification
Notes
- Open access
- Backgroundqtl.outbred is an extendible interface in the statistical environment, R, for combining quantitative trait loci (QTL) mapping tools. It is built as an umbrella package that enables outbred genotype probabilities to be calculated and/or imported into the software package R/qtl.FindingsUsing qtl.outbred, the genotype probabilities from outbred line cross data can be calculated by interfacing with a new and efficient algorithm developed for analyzing arbitrarily large datasets (included in the package) or imported from other sources such as the web-based tool, GridQTL.Conclusionqtl.outbred will improve the speed for calculating probabilities and the ability to analyse large future datasets. This package enables the user to analyse outbred line cross data accurately, but with similar effort than inbred line cross data.
Subject headings and genre
- MEDICIN OCH HÄLSOVETENSKAP Medicinska och farmaceutiska grundvetenskaper Cell- och molekylärbiologi hsv//swe
- MEDICAL AND HEALTH SCIENCES Basic Medicine Cell and Molecular Biology hsv//eng
- LANTBRUKSVETENSKAPER Veterinärmedicin hsv//swe
- AGRICULTURAL SCIENCES Veterinary Science hsv//eng
- LANTBRUKSVETENSKAPER Husdjursvetenskap hsv//swe
- AGRICULTURAL SCIENCES Animal and Dairy Sience hsv//eng
- NATURVETENSKAP Data- och informationsvetenskap Bioinformatik hsv//swe
- NATURAL SCIENCES Computer and Information Sciences Bioinformatics hsv//eng
- Complex Systems – Microdata Analysis
- Komplexa system - mikrodataanalys
- Bioinformatik
Added entries (persons, corporate bodies, meetings, titles ...)
- Shen, XiaHögskolan Dalarna,Statistik,Uppsala University(Swepub:slu)52436 (author)
- Carlborg, ÖrjanSwedish University of Agricultural Sciences,Sveriges lantbruksuniversitet,Institutionen för husdjursgenetik (HGEN),Department of Animal Breeding and Genetics,Uppsala University,SLU(Swepub:slu)48083 (author)
- Sveriges lantbruksuniversitetInstitutionen för husdjursgenetik (HGEN) (creator_code:org_t)
- Sveriges lantbruksuniversitet
Related titles
- In:BMC Research Notes: BioMed Central4:1541756-0500
Internet link
- https://du.diva-portal.org/smash/get/diva2:548298/FULLTEXT02.pdffulltext:print
- https://bmcresnotes.biomedcentral.com/track/pdf/10.1186/1756-0500-4-154
- https://urn.kb.se/resolve?urn=urn:nbn:se:du-10641
- https://doi.org/10.1186/1756-0500-4-154
- https://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-294230
- https://res.slu.se/id/publ/35257
- https://res.slu.se/id/publ/37422
- https://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-170087
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