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Whole-genome mappin...
Whole-genome mapping of 5′ RNA ends in bacteria by tagged sequencing: a comprehensive view in Enterococcus faecalis
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- Innocenti, Nicolas, 1986- (author)
- KTH,Beräkningsbiologi, CB,Computational Biological Physics, CBP
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- Golumbeanu, Monica (author)
- Department of Biosystems Science and Engineering, ETH Zürich, CH-4058, Basel, Switzerland
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- Fouquier d'Hérouël, Aymeric (author)
- KTH,Beräkningsbiologi, CB,Luxembourg Centre for Systems Biomedicine, University of Luxembourg, L-4362, Esch-sur-Alzette, Luxembourg
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- Lacoux, Caroline (author)
- INRA, UMR1319 Micalis, Domaine de Vilvert, F-78352, Jouy-en-Josas, France
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- Bonnin, Rémy A. (author)
- Institut de Génétique et Microbiologie, Université Paris-Sud, CNRS, UMR8621, F-91405, Orsay, France
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- Kennedy, Sean P. (author)
- INRA, MetaGenoPolis US1367, Domaine de Vilvert, F-78350, Jouy-en-Josas, France
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- Wessner, Francoise (author)
- INRA, UMR1319 Micalis, Domaine de Vilvert, F-78352, Jouy-en-Josas, France
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- Serror, Pascale (author)
- INRA, UMR1319 Micalis, Domaine de Vilvert, F-78352, Jouy-en-Josas, France
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- Bouloc, Philippe (author)
- Institut de Génétique et Microbiologie, Université Paris-Sud, CNRS, UMR8621, F-91405, Orsay, France
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- Repoila, Francis (author)
- INRA, UMR1319 Micalis, Domaine de Vilvert, F-78352, Jouy-en-Josas, France
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- Aurell, Erik, 1961- (author)
- KTH,Beräkningsbiologi, CB,Computational Biological Physics, CBP
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(creator_code:org_t)
- 2015-03-03
- 2015
- English.
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In: RNA. - : RNA Society. - 1355-8382 .- 1469-9001.
- Related links:
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http://www.rnajourna...
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https://kth.diva-por... (primary) (Raw object)
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https://kth.diva-por...
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https://kth.diva-por...
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https://kth.diva-por...
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https://kth.diva-por...
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https://kth.diva-por...
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https://kth.diva-por...
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https://kth.diva-por...
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http://rnajournal.cs...
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https://urn.kb.se/re...
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https://doi.org/10.1...
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Abstract
Subject headings
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- Enterococcus faecalis is the third cause of nosocomial infections. To obtain the first snapshot of transcriptional organizations in this bacterium, we used a modified RNA-seq approach enabling to discriminate primary from processed 5' RNA ends. We also validated our approach by confirming known features in Escherichia coli. We mapped 559 transcription start sites (TSSs) and 352 processing sites (PSSs) in E. faecalis. A blind motif search retrieved canonical features of SigA-and SigN-dependent promoters preceding transcription start sites mapped. We discovered 85 novel putative regulatory RNAs, small-and antisense RNAs, and 72 transcriptional antisense organizations. Presented data constitute a significant insight into bacterial RNA landscapes and a step toward the inference of regulatory processes at transcriptional and post-transcriptional levels in a comprehensive manner.
Subject headings
- NATURVETENSKAP -- Biologi -- Bioinformatik och systembiologi (hsv//swe)
- NATURAL SCIENCES -- Biological Sciences -- Bioinformatics and Systems Biology (hsv//eng)
- NATURVETENSKAP -- Biologi -- Mikrobiologi (hsv//swe)
- NATURAL SCIENCES -- Biological Sciences -- Microbiology (hsv//eng)
- NATURVETENSKAP -- Biologi -- Genetik (hsv//swe)
- NATURAL SCIENCES -- Biological Sciences -- Genetics (hsv//eng)
Keyword
- primary RNA
- processed RNA
- promoter
- RNA degradation
- Enterococcus faecalis
- Biological Physics
- Biologisk fysik
Publication and Content Type
- ref (subject category)
- art (subject category)
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RNA
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Innocenti, Nicol ...
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Golumbeanu, Moni ...
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Fouquier d'Hérou ...
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Lacoux, Caroline
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Bonnin, Rémy A.
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Kennedy, Sean P.
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Wessner, Francoi ...
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Serror, Pascale
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Bouloc, Philippe
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Repoila, Francis
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Aurell, Erik, 19 ...
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- About the subject
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- NATURAL SCIENCES
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NATURAL SCIENCES
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and Biological Scien ...
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and Bioinformatics a ...
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- NATURAL SCIENCES
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NATURAL SCIENCES
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and Biological Scien ...
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and Microbiology
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- NATURAL SCIENCES
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NATURAL SCIENCES
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and Biological Scien ...
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and Genetics
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RNA
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Royal Institute of Technology