Search: onr:"swepub:oai:DiVA.org:kth-241207" >
Using Scipion for s...
Using Scipion for stream image processing at Cryo-EM facilities
-
- Gomez-Blanco, J. (author)
- McGill Univ, Dept Anat & Cell Biol, Montreal, PQ, Canada.
-
- de la Rosa-Trevín, José Miguel (author)
- Stockholms universitet,Institutionen för biokemi och biofysik,Science for Life Laboratory (SciLifeLab)
-
- Marabini, R. (author)
- Univ Autonoma Madrid, Escuela Politecn Super, E-28049 Madrid, Spain.
-
show more...
-
- del Cano, L. (author)
- CSIC, Natl Ctr Biotechnol, Biocomp Unit, C Darwin 3,Campus Univ Autonoma, Madrid 28049, Spain.
-
- Jimenez, A. (author)
- CSIC, Natl Ctr Biotechnol, Biocomp Unit, C Darwin 3,Campus Univ Autonoma, Madrid 28049, Spain.
-
- Martinez, M. (author)
- CSIC, Natl Ctr Biotechnol, Biocomp Unit, C Darwin 3,Campus Univ Autonoma, Madrid 28049, Spain.
-
- Melero, R. (author)
- CSIC, Natl Ctr Biotechnol, Biocomp Unit, C Darwin 3,Campus Univ Autonoma, Madrid 28049, Spain.
-
- Majtner, T. (author)
- CSIC, Natl Ctr Biotechnol, Biocomp Unit, C Darwin 3,Campus Univ Autonoma, Madrid 28049, Spain.
-
- Maluenda, D. (author)
- CSIC, Natl Ctr Biotechnol, Biocomp Unit, C Darwin 3,Campus Univ Autonoma, Madrid 28049, Spain.
-
- Mota, J. (author)
- CSIC, Natl Ctr Biotechnol, Biocomp Unit, C Darwin 3,Campus Univ Autonoma, Madrid 28049, Spain.
-
- Rancel, Y. (author)
- CSIC, Natl Ctr Biotechnol, Biocomp Unit, C Darwin 3,Campus Univ Autonoma, Madrid 28049, Spain.
-
- Ramirez-Aportela, E. (author)
- CSIC, Natl Ctr Biotechnol, Biocomp Unit, C Darwin 3,Campus Univ Autonoma, Madrid 28049, Spain.
-
- Vilas, J. L. (author)
- CSIC, Natl Ctr Biotechnol, Biocomp Unit, C Darwin 3,Campus Univ Autonoma, Madrid 28049, Spain.
-
- Carroni, Marta (author)
- Stockholms universitet,Institutionen för biokemi och biofysik,Science for Life Laboratory (SciLifeLab)
-
- Fleischmann, Stefan (author)
- Stockholms universitet,Institutionen för biokemi och biofysik,Science for Life Laboratory (SciLifeLab)
-
- Lindahl, Erik, 1972- (author)
- Stockholms universitet,KTH,SeRC - Swedish e-Science Research Centre,Stockholm Univ, Dept Biochem & Biophys, Sci Life Lab, Stockholm, Sweden.;KTH Royal Inst Technol, Swedish E Sci Res Ctr, Stockholm, Sweden.,Institutionen för biokemi och biofysik,Science for Life Laboratory (SciLifeLab),KTH Royal Institute of Technology, Sweden
-
- Ashton, A. W. (author)
- Harwell Sci & Innovat Campus, Diamond Light Source, Didcot OX11 0DE, Oxon, England.
-
- Basham, M. (author)
- Harwell Sci & Innovat Campus, Diamond Light Source, Didcot OX11 0DE, Oxon, England.
-
- Clare, D. K. (author)
- Harwell Sci & Innovat Campus, Diamond Light Source, Didcot OX11 0DE, Oxon, England.
-
- Savage, K. (author)
- Harwell Sci & Innovat Campus, Diamond Light Source, Didcot OX11 0DE, Oxon, England.
-
- Siebert, C. A. (author)
- Harwell Sci & Innovat Campus, Diamond Light Source, Didcot OX11 0DE, Oxon, England.
-
- Sharov, G. G. (author)
- MRC, Lab Mol Biol, Francis Crick Ave, Cambridge CB2 OQH, England.
-
- Sorzano, C. O. S. (author)
- CSIC, Natl Ctr Biotechnol, Biocomp Unit, C Darwin 3,Campus Univ Autonoma, Madrid 28049, Spain.
-
- Conesa, P. (author)
- CSIC, Natl Ctr Biotechnol, Biocomp Unit, C Darwin 3,Campus Univ Autonoma, Madrid 28049, Spain.
-
- Carazo, J. M. (author)
- CSIC, Natl Ctr Biotechnol, Biocomp Unit, C Darwin 3,Campus Univ Autonoma, Madrid 28049, Spain.
-
show less...
-
McGill Univ, Dept Anat & Cell Biol, Montreal, PQ, Canada Institutionen för biokemi och biofysik (creator_code:org_t)
- ACADEMIC PRESS INC ELSEVIER SCIENCE, 2018
- 2018
- English.
-
In: Journal of Structural Biology. - : ACADEMIC PRESS INC ELSEVIER SCIENCE. - 1047-8477 .- 1095-8657. ; 204:3, s. 457-463
- Related links:
-
https://doi.org/10.1...
-
show more...
-
https://doi.org/10.1...
-
https://urn.kb.se/re...
-
https://doi.org/10.1...
-
https://urn.kb.se/re...
-
show less...
Abstract
Subject headings
Close
- Three dimensional electron microscopy is becoming a very data-intensive field in which vast amounts of experimental images are acquired at high speed. To manage such large-scale projects, we had previously developed a modular workflow system called Scipion (de la Rosa-Trevfn et al., 2016). We present here a major extension of Scipion that allows processing of EM images while the data is being acquired. This approach helps to detect problems at early stages, saves computing time and provides users with a detailed evaluation of the data quality before the acquisition is finished. At present, Scipion has been deployed and is in production mode in seven Cryo-EM facilities throughout the world.
Subject headings
- NATURVETENSKAP -- Biologi -- Strukturbiologi (hsv//swe)
- NATURAL SCIENCES -- Biological Sciences -- Structural Biology (hsv//eng)
- NATURVETENSKAP -- Biologi (hsv//swe)
- NATURAL SCIENCES -- Biological Sciences (hsv//eng)
Keyword
- Electron microscopy
- Streaming Image processing
- Live processing
- High throughput
- Scipion
Publication and Content Type
- ref (subject category)
- art (subject category)
Find in a library
To the university's database
- By the author/editor
-
Gomez-Blanco, J.
-
de la Rosa-Treví ...
-
Marabini, R.
-
del Cano, L.
-
Jimenez, A.
-
Martinez, M.
-
show more...
-
Melero, R.
-
Majtner, T.
-
Maluenda, D.
-
Mota, J.
-
Rancel, Y.
-
Ramirez-Aportela ...
-
Vilas, J. L.
-
Carroni, Marta
-
Fleischmann, Ste ...
-
Lindahl, Erik, 1 ...
-
Ashton, A. W.
-
Basham, M.
-
Clare, D. K.
-
Savage, K.
-
Siebert, C. A.
-
Sharov, G. G.
-
Sorzano, C. O. S ...
-
Conesa, P.
-
Carazo, J. M.
-
show less...
- About the subject
-
- NATURAL SCIENCES
-
NATURAL SCIENCES
-
and Biological Scien ...
-
and Structural Biolo ...
-
- NATURAL SCIENCES
-
NATURAL SCIENCES
-
and Biological Scien ...
- Articles in the publication
-
Journal of Struc ...
- By the university
-
Royal Institute of Technology
-
Stockholm University