Genetic risk for autoimmunity is associated with distinct changes in the human gut microbiome

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Russell, Jordan T.Univ Florida, FL 32611 USA (author)

Genetic risk for autoimmunity is associated with distinct changes in the human gut microbiome

Article/chapterEnglish2019

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2019-08-09
Nature Publishing Group,2019
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LIBRIS-ID:oai:DiVA.org:liu-159863
https://urn.kb.se/resolve?urn=urn:nbn:se:liu:diva-159863URI
https://doi.org/10.1038/s41467-019-11460-xDOI

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Language:English
Summary in:English

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Funding Agencies|Barndiabetesfonden (Swedish Child Diabetes Foundation); Swedish Council for Working Life and Social Research [FAS2004-1775]; Swedish Research Council [K2005-72 x - 11242-11A, K2008-69 x - 20826-01-4]; Medical Research Council of Southeast Sweden (FORSS); JDRF Wallenberg Foundation [K 98-99D-12813-01A]; ALF grant from Region Ostergotland, Sweden; ALF grant from Linkoping University, Sweden; LfoU grant from Region Ostergotland, Sweden; LfoU grant from Linkoping University, Sweden; Ostgota Brandstodsbolag
Susceptibility to many human autoimmune diseases is under strong genetic control by class II human leukocyte antigen (HLA) allele combinations. These genes remain by far the greatest risk factors in the development of type 1 diabetes and celiac disease. Despite this, little is known about HLA influences on the composition of the human gut microbiome, a potential source of environmental influence on disease. Here, using a general population cohort from the All Babies in Southeast Sweden study, we report that genetic risk for developing type 1 diabetes autoimmunity is associated with distinct changes in the gut microbiome. Both the core microbiome and beta diversity differ with HLA risk group and genotype. In addition, protective HLA haplotypes are associated with bacterial genera Intestinibacter and Romboutsia. Thus, general population cohorts are valuable in identifying potential environmental triggers or protective factors for autoimmune diseases that may otherwise be masked by strong genetic control.

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Roesch, Luiz F. W.Univ Fed Pampa, Brazil (author)
Ördberg, MalinLinköpings universitet,Avdelningen för barns och kvinnors hälsa,Medicinska fakulteten,Region Östergötland, H.K.H. Kronprinsessan Victorias barn- och ungdomssjukhus(Swepub:liu)malor64 (author)
Ilonen, JormaUniv Turku, Finland; Turku Univ Hosp, Finland (author)
Atkinson, Mark A.Univ Florida, FL 32610 USA (author)
Schatz, Desmond A.Univ Florida, FL 32610 USA (author)
Triplett, Eric W.Univ Florida, FL 32611 USA (author)
Ludvigsson, JohnnyLinköpings universitet,Avdelningen för barns och kvinnors hälsa,Medicinska fakulteten,Region Östergötland, H.K.H. Kronprinsessan Victorias barn- och ungdomssjukhus(Swepub:liu)johlu29 (author)
Univ Florida, FL 32611 USAUniv Fed Pampa, Brazil (creator_code:org_t)

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In:Nature Communications: Nature Publishing Group102041-1723

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