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Bioinformatics proc...
Bioinformatics processing of protein and transcript profiles of normal and transformed cell lines indicates functional impairment of transcriptional regulators in buccal carcinoma
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- Staab, Claudia A (author)
- Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm, Sweden
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- Ceder, Rebecca (author)
- Karolinska Institutet
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- Jägerbrink, Theres (author)
- Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm, Sweden
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- Nilsson, Jan-Anders (author)
- Institute of Environmental Medicine, Karolinska Institutet, Stockholm, Sweden
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- Roberg, Karin, 1957- (author)
- Östergötlands Läns Landsting,Linköpings universitet,Oto-Rhino-Laryngologi,Hälsouniversitetet,Öronkliniken US
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- Jörnvall, Hans (author)
- Karolinska Institutet
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- Höög, Jan-Olov (author)
- Karolinska Institutet
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- Grafström, Roland C (author)
- Institute of Environmental Medicine, Karolinska Institutet, Stockholm, Sweden
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(creator_code:org_t)
- 2007-08-15
- 2007
- English.
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In: Journal of Proteome Research. - : American Chemical Society (ACS). - 1535-3893 .- 1535-3907. ; 6:9, s. 3705-3717
- Related links:
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https://urn.kb.se/re...
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https://doi.org/10.1...
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Abstract
Subject headings
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- Normal and two transformed buccal keratinocyte lines were cultured under a standardized condition to explore mechanisms of carcinogenesis and tumor marker expression at transcript and protein levels. An approach combining three bioinformatic programs allowed coupling of abundant proteins and large-scale transcript data to low-abundance transcriptional regulators. The analysis identified previously proposed and suggested novel protein biomarkers, gene ontology categories, molecular networks, and functionally impaired key regulator genes for buccal/oral carcinoma. © 2007 American Chemical Society.
Keyword
- cancer biomarkers; proteomics; transcriptomics; oral cancer; gene ontology; molecular networks; transcription factors; cultured oral keratinocytes; serum-free conditions
- MEDICINE
- MEDICIN
Publication and Content Type
- ref (subject category)
- art (subject category)
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