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Unbiased Approach f...
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Bzhalava, DavitKarolinska Institutet,Karolinska Institutet, Stockholm, Sweden
(author)
Unbiased Approach for Virus Detection in Skin Lesions
- Article/chapterEnglish2013
Publisher, publication year, extent ...
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2013-06-28
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Public Library of Science,2013
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electronicrdacarrier
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LIBRIS-ID:oai:DiVA.org:liu-96427
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https://urn.kb.se/resolve?urn=urn:nbn:se:liu:diva-96427URI
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https://doi.org/10.1371/journal.pone.0065953DOI
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https://lup.lub.lu.se/record/3974102URI
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https://gup.ub.gu.se/publication/184891URI
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http://kipublications.ki.se/Default.aspx?queryparsed=id:127097777URI
Supplementary language notes
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Language:English
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Summary in:English
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Subject category:ref swepub-contenttype
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Subject category:art swepub-publicationtype
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Funding Agencies|Swedish Cancer Society|110569|Swedish Research Council|3468|Swedish government strategic program on Biomarkers in Cancer Research (BioCARE)||
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To assess presence of virus DNA in skin lesions, swab samples from 82 squamous cell carcinomas of the skin (SCCs), 60 actinic keratoses (AKs), paraffin-embedded biopsies from 28 SCCs and 72 kerathoacanthomas (KAs) and fresh-frozen biopsies from 92 KAs, 85 SCCs and 92 AKs were analyzed by high throughput sequencing (HTS) using 454 or Ion Torrent technology. We found total of 4,284 viral reads, out of which 4,168 were Human Papillomavirus (HPV)-related, belonging to 15 known (HPV8, HPV12, HPV20, HPV36, HPV38, HPV45, HPV57, HPV59, HPV104, HPV105, HPV107, HPV109, HPV124, HPV138, HPV147), four previously described putative (HPV 915 F 06 007 FD1, FA73, FA101, SE42) and two putatively new HPV types (SE46, SE47). SE42 was cloned, sequenced, designated as HPV155 and found to have 76% similarity to the most closely related known HPV type. In conclusion, an unbiased approach for viral DNA detection in skin tumors has found that, although some new putative HPVs were found, known HPV types constituted most of the viral DNA.
Subject headings and genre
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Johansson, Hanna KLund University,Lunds universitet,Klinisk mikrobiologi, Malmö,Forskargrupper vid Lunds universitet,Clinical Microbiology, Malmö,Lund University Research Groups,Lund University, Malmö, Sweden(Swepub:lu)med-hkj
(author)
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Ekström, JohannaLund University,Lunds universitet,Klinisk mikrobiologi, Malmö,Forskargrupper vid Lunds universitet,Clinical Microbiology, Malmö,Lund University Research Groups,Karolinska Institutet, Stockholm, Sweden(Swepub:lu)mikr-jku
(author)
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Faust, HelenaLund University,Lunds universitet,Klinisk mikrobiologi, Malmö,Forskargrupper vid Lunds universitet,Clinical Microbiology, Malmö,Lund University Research Groups,Lund University, Malmö, Sweden(Swepub:lu)med-hfa
(author)
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Moller, BirgittaKarolinska Institutet, Stockholm, Sweden
(author)
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Eklund, CarinaKarolinska Institutet,Karolinska Institutet, Stockholm, Sweden
(author)
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Nordin, PeterLäkarhuset, Gothenburg, Sweden
(author)
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Stenquist, BoGothenburg University,Göteborgs universitet,Institutionen för kliniska vetenskaper, Avdelningen för dermatologi och venereologi,Institute of Clinical Sciences, Department of Dermatology and Venereology,University of Gothenburg, Sweden
(author)
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Paoli, John,1975Gothenburg University,Göteborgs universitet,Institutionen för kliniska vetenskaper, Avdelningen för dermatologi och venereologi,Institute of Clinical Sciences, Department of Dermatology and Venereology,University of Gothenburg, Sweden(Swepub:gu)xpaojo
(author)
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Persson, BengtLinköpings universitet,Bioinformatik,Tekniska högskolan(Swepub:liu)benpe05
(author)
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Forslund, OlaLund University,Lunds universitet,Klinisk mikrobiologi, Malmö,Forskargrupper vid Lunds universitet,Clinical Microbiology, Malmö,Lund University Research Groups,Lund University, Malmö, Sweden(Swepub:lu)mikr-ofo
(author)
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Dillner, JoakimKarolinska Institutet,Lund University,Lunds universitet,Klinisk mikrobiologi, Malmö,Forskargrupper vid Lunds universitet,Clinical Microbiology, Malmö,Lund University Research Groups,Karolinska Institutet, Stockholm, Sweden(Swepub:lu)mikr-jdi
(author)
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Karolinska InstitutetKarolinska Institutet, Stockholm, Sweden
(creator_code:org_t)
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In:PLOS ONE: Public Library of Science8:61932-6203
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Ekström, Johanna
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Faust, Helena
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Eklund, Carina
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Nordin, Peter
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Stenquist, Bo
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