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Genome-scale phylog...
Genome-scale phylogeny and comparative genomics of the fungal order Sordariales
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- Hensen, Noah (author)
- Stockholms universitet,Institutionen för ekologi, miljö och botanik
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Bonometti, Lucas (author)
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Westerberg, Ivar (author)
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- Onuţ-Brännström, Ioana (author)
- Uppsala universitet,Evolutionsbiologi,Univ Oslo, Nat Hist Museum, Oslo, Norway.
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Guillou, Sonia (author)
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Cros-Aarteil, Sandrine (author)
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Calhoun, Sara (author)
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Haridas, Sajeet (author)
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Kuo, Alan (author)
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Mondo, Stephen (author)
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Pangilinan, Jasmyn (author)
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Riley, Robert (author)
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Labutti, Kurt (author)
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Andreopoulos, Bill (author)
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Lipzen, Anna (author)
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Chen, Cindy (author)
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Yan, Mi (author)
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Daum, Chris (author)
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Ng, Vivian (author)
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Clum, Alicia (author)
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Steindorff, Andrei (author)
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Ohm, Robin A. (author)
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Martin, Francis (author)
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Silar, Philippe (author)
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Natvig, Donald O. (author)
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Lalanne, Christophe (author)
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Gautier, Valerie (author)
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- Ament-Velasquezi, Sandra Lorena (author)
- Stockholms universitet,Zoologiska institutionen
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- Kruys, Åsa, 1975- (author)
- Uppsala universitet,Evolutionsmuseet
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Hutchinson, Miriam I. (author)
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Powell, Amy Jo (author)
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Barry, Kerrie (author)
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Miller, Andrew N. (author)
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Grigoriev, Igor (author)
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Debuchy, Robert (author)
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Gladieux, Pierre (author)
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- Thorén, Markus Hiltunen (author)
- Stockholms universitet,Institutionen för ekologi, miljö och botanik,The Royal Swedish Academy of Sciences, Sweden
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- Johannesson, Hanna (author)
- Stockholms universitet,Institutionen för ekologi, miljö och botanik,The Royal Swedish Academy of Sciences, Sweden
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(creator_code:org_t)
- Elsevier, 2023
- 2023
- English.
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In: Molecular Phylogenetics and Evolution. - : Elsevier. - 1055-7903 .- 1095-9513. ; 189
- Related links:
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https://doi.org/10.1...
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https://uu.diva-port... (primary) (Raw object)
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https://urn.kb.se/re...
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https://doi.org/10.1...
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Abstract
Subject headings
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- The order Sordariales is taxonomically diverse, and harbours many species with different lifestyles and large economic importance. Despite its importance, a robust genome-scale phylogeny, and associated comparative genomic analysis of the order is lacking.In this study, we examined whole-genome data from 99 Sordariales, including 52 newly sequenced genomes, and seven outgroup taxa. We inferred a comprehensive phylogeny that resolved several contentious relationships amongst families in the order, and cleared-up intrafamily relationships within the Podosporaceae. Extensive comparative genomics showed that genomes from the three largest families in the dataset (Chae-tomiaceae, Podosporaceae and Sordariaceae) differ greatly in GC content, genome size, gene number, repeat percentage, evolutionary rate, and genome content affected by repeat-induced point mutations (RIP). All genomic traits showed phylogenetic signal, and ancestral state reconstruction revealed that the variation of the properties stems primarily from within-family evolution. Together, the results provide a thorough framework for understanding genome evolution in this important group of fungi.
Subject headings
- NATURVETENSKAP -- Geovetenskap och miljövetenskap -- Miljövetenskap (hsv//swe)
- NATURAL SCIENCES -- Earth and Related Environmental Sciences -- Environmental Sciences (hsv//eng)
- NATURVETENSKAP -- Biologi -- Evolutionsbiologi (hsv//swe)
- NATURAL SCIENCES -- Biological Sciences -- Evolutionary Biology (hsv//eng)
Keyword
- Whole-genome phylogeny
- Podosporaceae
- Chaetomiaceae
- Sordariaceae
- Genome evolution
Publication and Content Type
- ref (subject category)
- art (subject category)
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To the university's database
- By the author/editor
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Hensen, Noah
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Bonometti, Lucas
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Westerberg, Ivar
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Onuţ-Brännström, ...
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Guillou, Sonia
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Cros-Aarteil, Sa ...
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show more...
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Calhoun, Sara
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Haridas, Sajeet
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Kuo, Alan
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Mondo, Stephen
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Pangilinan, Jasm ...
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Riley, Robert
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Labutti, Kurt
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Andreopoulos, Bi ...
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Lipzen, Anna
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Chen, Cindy
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Yan, Mi
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Daum, Chris
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Ng, Vivian
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Clum, Alicia
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Steindorff, Andr ...
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Ohm, Robin A.
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Martin, Francis
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Silar, Philippe
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Natvig, Donald O ...
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Lalanne, Christo ...
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Gautier, Valerie
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Ament-Velasquezi ...
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Kruys, Åsa, 1975 ...
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Hutchinson, Miri ...
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Powell, Amy Jo
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Barry, Kerrie
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Miller, Andrew N ...
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Grigoriev, Igor
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Debuchy, Robert
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Gladieux, Pierre
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Thorén, Markus H ...
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Johannesson, Han ...
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show less...
- About the subject
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- NATURAL SCIENCES
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NATURAL SCIENCES
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and Earth and Relate ...
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and Environmental Sc ...
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- NATURAL SCIENCES
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NATURAL SCIENCES
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and Biological Scien ...
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and Evolutionary Bio ...
- Articles in the publication
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Molecular Phylog ...
- By the university
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Stockholm University
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Uppsala University