Search: onr:"swepub:oai:DiVA.org:umu-121444" >
The Atlantic salmon...
The Atlantic salmon genome provides insights into rediploidization
-
Lien, Sigbjorn (author)
-
Koop, Ben F. (author)
-
Sandve, Simen R. (author)
-
show more...
-
Miller, Jason R. (author)
-
Kent, Matthew P. (author)
-
Nome, Torfinn (author)
-
- Hvidsten, Torgeir R. (author)
- Umeå universitet,Institutionen för fysiologisk botanik,Umeå Plant Science Centre (UPSC)
-
Leong, Jong S. (author)
-
Minkley, David R. (author)
-
Zimin, Aleksey (author)
-
Grammes, Fabian (author)
-
Grove, Harald (author)
-
Gjuvsland, Arne (author)
-
Walenz, Brian (author)
-
Hermansen, Russell A. (author)
-
von Schalburg, Kris (author)
-
Rondeau, Eric B. (author)
-
Di Genova, Alex (author)
-
Samy, Jeevan K. A. (author)
-
Vik, Jon Olav (author)
-
Vigeland, Magnus D. (author)
-
Caler, Lis (author)
-
Grimholt, Unni (author)
-
Jentoft, Sissel (author)
-
Vage, Dag Inge (author)
-
de Jong, Pieter (author)
-
Moen, Thomas (author)
-
Baranski, Matthew (author)
-
Palti, Yniv (author)
-
Smith, Douglas R. (author)
-
Yorke, James A. (author)
-
Nederbragt, Alexander J. (author)
-
Tooming-Klunderud, Ave (author)
-
Jakobsen, Kjetill S. (author)
-
Jiang, Xuanting (author)
-
Fan, Dingding (author)
-
Liberles, David A. (author)
-
Vidal, Rodrigo (author)
-
Iturra, Patricia (author)
-
Jones, Steven J. M. (author)
-
Jonassen, Inge (author)
-
Maass, Alejandro (author)
-
Omholt, Stig W. (author)
-
Davidson, William S. (author)
-
show less...
-
(creator_code:org_t)
- 2016-04-18
- 2016
- English.
-
In: Nature. - : Nature Publishing Group. - 0028-0836 .- 1476-4687. ; 533:7602, s. 200-205
- Related links:
-
https://doi.org/10.1...
-
show more...
-
https://umu.diva-por... (primary) (Raw object)
-
https://www.nature.c...
-
https://urn.kb.se/re...
-
https://doi.org/10.1...
-
show less...
Abstract
Subject headings
Close
- The whole-genome duplication 80 million years ago of the common ancestor of salmonids (salmonid-specific fourth vertebrate whole-genome duplication, Ss4R) provides unique opportunities to learn about the evolutionary fate of a duplicated vertebrate genome in 70 extant lineages. Here we present a high-quality genome assembly for Atlantic salmon (Salmo salar), and show that large genomic reorganizations, coinciding with bursts of transposon-mediated repeat expansions, were crucial for the post-Ss4R rediploidization process. Comparisons of duplicate gene expression patterns across a wide range of tissues with orthologous genes from a pre-Ss4R outgroup unexpectedly demonstrate far more instances of neofunctionalization than subfunctionalization. Surprisingly, we find that genes that were retained as duplicates after the teleost-specific whole-genome duplication 320 million years ago were not more likely to be retained after the Ss4R, and that the duplicate retention was not influenced to a great extent by the nature of the predicted protein interactions of the gene products. Finally, we demonstrate that the Atlantic salmon assembly can serve as a reference sequence for the study of other salmonids for a range of purposes.
Subject headings
- NATURVETENSKAP -- Biologi (hsv//swe)
- NATURAL SCIENCES -- Biological Sciences (hsv//eng)
Publication and Content Type
- ref (subject category)
- art (subject category)
Find in a library
-
Nature
(Search for host publication in LIBRIS)
To the university's database
- By the author/editor
-
Lien, Sigbjorn
-
Koop, Ben F.
-
Sandve, Simen R.
-
Miller, Jason R.
-
Kent, Matthew P.
-
Nome, Torfinn
-
show more...
-
Hvidsten, Torgei ...
-
Leong, Jong S.
-
Minkley, David R ...
-
Zimin, Aleksey
-
Grammes, Fabian
-
Grove, Harald
-
Gjuvsland, Arne
-
Walenz, Brian
-
Hermansen, Russe ...
-
von Schalburg, K ...
-
Rondeau, Eric B.
-
Di Genova, Alex
-
Samy, Jeevan K. ...
-
Vik, Jon Olav
-
Vigeland, Magnus ...
-
Caler, Lis
-
Grimholt, Unni
-
Jentoft, Sissel
-
Vage, Dag Inge
-
de Jong, Pieter
-
Moen, Thomas
-
Baranski, Matthe ...
-
Palti, Yniv
-
Smith, Douglas R ...
-
Yorke, James A.
-
Nederbragt, Alex ...
-
Tooming-Klunderu ...
-
Jakobsen, Kjetil ...
-
Jiang, Xuanting
-
Fan, Dingding
-
Liberles, David ...
-
Vidal, Rodrigo
-
Iturra, Patricia
-
Jones, Steven J. ...
-
Jonassen, Inge
-
Maass, Alejandro
-
Omholt, Stig W.
-
Davidson, Willia ...
-
show less...
- About the subject
-
- NATURAL SCIENCES
-
NATURAL SCIENCES
-
and Biological Scien ...
- Articles in the publication
-
Nature
- By the university
-
Umeå University