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Escherichia coli ca...
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Nielsen, Karen LethDepartment of Clinical Microbiology, Rigshospitalet, Copenhagen, Denmark
(author)
Escherichia coli causing recurrent urinary tract infections: Comparison to non-recurrent isolates and genomic adaptation in recurrent infections
- Article/chapterEnglish2021
Publisher, publication year, extent ...
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2021-06-30
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MDPI,2021
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electronicrdacarrier
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LIBRIS-ID:oai:DiVA.org:umu-185758
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https://urn.kb.se/resolve?urn=urn:nbn:se:umu:diva-185758URI
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https://doi.org/10.3390/microorganisms9071416DOI
Supplementary language notes
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Language:English
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Summary in:English
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Subject category:ref swepub-contenttype
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Subject category:art swepub-publicationtype
Notes
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Recurrent urinary tract infection (rUTI) remains a major problem for many women and therefore the pursuit for genomic and phenotypic traits which could define rUTI has been ongoing. The present study applied a genomic approach to investigate recurrent urinary tract infections by comparative analyses of recurrent and non-recurrent Escherichia coli isolates from general practice. From whole-genome sequencing data, phylogenetic clustering and genomic traits were studied on a collection of isolates which caused recurrent infection compared to non-recurrent isolates. In addition, genomic variation between the 1st and following infection was studied on a subset of the isolates. Evidence of limited adaptation between the recurrent infections based on single nucleotide polymorphism analyses with a range of 0–13 non-synonymous single nucleotide polymorphisms (SNPs) between the paired isolates. This included an overrepresentation of SNPs in metabolism genes. We identified several genes which were more common in rUTI isolates, including nine fimbrial genes, however, not significantly after false-discovery rate. Finally, the results show that recurrent isolates of the present dataset are not distinctive by variation in the core genome, and thus, did not cluster distinct from non-rUTI isolates in a SNP phylogeny.
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Stegger, MarcDepartment of Bacteria, Parasites and Fungi, Statens Serum Institut, Copenhagen, Denmark
(author)
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Kiil, KristofferDepartment of Bacteria, Parasites and Fungi, Statens Serum Institut, Copenhagen, Denmark
(author)
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Lilje, BeritDepartment of Bacteria, Parasites and Fungi, Statens Serum Institut, Copenhagen, Denmark
(author)
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Ejrnæs, KarenDepartment of Bacteria, Parasites and Fungi, Statens Serum Institut, Copenhagen, Denmark; Department of Pathology, Herlev Hospital, Herlev, Denmark
(author)
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Leihof, Rikke FleronDepartment of Bacteria, Parasites and Fungi, Statens Serum Institut, Copenhagen, Denmark; Analytical Development, Novo Nordisk, Måløv, Denmark
(author)
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Skjøt-Rasmussen, LineDepartment of Bacteria, Parasites and Fungi, Statens Serum Institut, Copenhagen, Denmark; Animal Health Innovation, Chr. Hansen, Hørsholm, Denmark
(author)
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Godfrey, PaulGenome Sequencing and Analysis Program, Institute of Technology, Broad Institute of Harvard and Massachusetts, MA, Cambridge, United States
(author)
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Monsen, Tor J.Umeå universitet,Institutionen för klinisk mikrobiologi(Swepub:umu)tomo0002
(author)
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Ferry, Sven A.Umeå universitet,Institutionen för klinisk mikrobiologi(Swepub:umu)svfe0003
(author)
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Hammerum, Anette M.Department of Bacteria, Parasites and Fungi, Statens Serum Institut, Copenhagen, Denmark
(author)
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Frimodt-Møller, NielsDepartment of Clinical Microbiology, Rigshospitalet, Copenhagen, Denmark
(author)
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Department of Clinical Microbiology, Rigshospitalet, Copenhagen, DenmarkDepartment of Bacteria, Parasites and Fungi, Statens Serum Institut, Copenhagen, Denmark
(creator_code:org_t)
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In:Microorganisms: MDPI9:72076-2607
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Stegger, Marc
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Kiil, Kristoffer
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Lilje, Berit
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Skjøt-Rasmussen, ...
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Godfrey, Paul
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