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Rare variants of la...
Rare variants of large effect in BRCA2 and CHEK2 affect risk of lung cancer
- Article/chapterEnglish2014
Publisher, publication year, extent ...
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2014-06-01
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Springer Science and Business Media LLC,2014
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printrdacarrier
Numbers
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LIBRIS-ID:oai:DiVA.org:umu-91271
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https://urn.kb.se/resolve?urn=urn:nbn:se:umu:diva-91271URI
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https://doi.org/10.1038/ng.3002DOI
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http://kipublications.ki.se/Default.aspx?queryparsed=id:129272924URI
Supplementary language notes
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Language:English
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Summary in:English
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Subject category:ref swepub-contenttype
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Subject category:art swepub-publicationtype
Notes
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Correction: Wang, Y., McKay, J., Rafnar, T. et al. Correction: Corrigendum: Rare variants of large effect in BRCA2 and CHEK2 affect risk of lung cancer. Nat Genet 49, 651 (2017). DOI: 10.1038/ng0417-651a
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We conducted imputation to the 1000 Genomes Project of four genome-wide association studies of lung cancer in populations of European ancestry (11,348 cases and 15,861 controls) and genotyped an additional 10,246 cases and 38,295 controls for follow-up. We identified large-effect genome-wide associations for squamous lung cancer with the rare variants BRCA2 p.Lys3326X (rs11571833, odds ratio (OR) = 2.47, P = 4.74 x 10(-20)) and CHEK2 p.Ile157Thr (rs17879961, OR = 0.38, P = 1.27 x 10(-13)). We also showed an association between common variation at 3q28 (TP63, rs13314271, OR = 1.13, P = 7.22 x 10(-10)) and lung adenocarcinoma that had been previously reported only in Asians. These findings provide further evidence for inherited genetic susceptibility to lung cancer and its biological basis. Additionally, our analysis demonstrates that imputation can identify rare disease-causing variants with substantive effects on cancer risk from preexisting genome-wide association study data.
Subject headings and genre
Added entries (persons, corporate bodies, meetings, titles ...)
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Mckay, James D.
(author)
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Rafnar, Thorunn
(author)
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Wang, Zhaoming
(author)
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Timofeeva, Maria N.
(author)
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Broderick, Peter
(author)
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Zong, Xuchen
(author)
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Laplana, Marina
(author)
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Wei, Yongyue
(author)
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Han, Younghun
(author)
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Lloyd, Amy
(author)
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Delahaye-Sourdeix, Manon
(author)
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Chubb, Daniel
(author)
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Gaborieau, Valerie
(author)
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Wheeler, William
(author)
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Chatterjee, Nilanjan
(author)
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Thorleifsson, Gudmar
(author)
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Sulem, Patrick
(author)
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Liu, Geoffrey
(author)
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Kaaks, Rudolf
(author)
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Henrion, Marc
(author)
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Kinnersley, Ben
(author)
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Vallee, Maxime
(author)
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LeCalvez-Kelm, Florence
(author)
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Stevens, Victoria L.
(author)
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Gapstur, Susan M.
(author)
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Chen, Wei V.
(author)
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Zaridze, David
(author)
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Szeszenia-Dabrowska, Neonilia
(author)
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Lissowska, Jolanta
(author)
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Rudnai, Peter
(author)
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Fabianova, Eleonora
(author)
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Mates, Dana
(author)
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Bencko, Vladimir
(author)
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Foretova, Lenka
(author)
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Janout, Vladimir
(author)
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Krokan, Hans E.
(author)
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Gabrielsen, Maiken Elvestad
(author)
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Skorpen, Frank
(author)
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Vatten, Lars
(author)
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Njolstad, Inger
(author)
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Chen, Chu
(author)
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Goodman, Gary
(author)
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Benhamou, Simone
(author)
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Vooder, Tonu
(author)
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Valk, Kristjan
(author)
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Nelis, Mari
(author)
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Metspalu, Andres
(author)
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Lener, Marcin
(author)
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Lubinski, Jan
(author)
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Johansson, Mattias
(author)
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Vineis, Paolo
(author)
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Agudo, Antonio
(author)
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Clavel-Chapelon, Francoise
(author)
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Bueno-de-Mesquita, H. Bas
(author)
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Trichopoulos, Dimitrios
(author)
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Khaw, Kay-Tee
(author)
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Johansson, MikaelUmeå universitet,Onkologi(Swepub:umu)mijo0025
(author)
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Weiderpass, ElisabeteKarolinska Institutet
(author)
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Tjonneland, Anne
(author)
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Riboli, Elio
(author)
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Lathrop, Mark
(author)
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Scelo, Ghislaine
(author)
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Albanes, Demetrius
(author)
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Caporaso, Neil E.
(author)
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Ye, Yuanqing
(author)
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Gu, Jian
(author)
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Wu, Xifeng
(author)
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Spitz, Margaret R.
(author)
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Dienemann, Hendrik
(author)
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Rosenberger, Albert
(author)
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Su, Li
(author)
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Matakidou, Athena
(author)
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Eisen, Timothy
(author)
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Stefansson, Kari
(author)
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Risch, Angela
(author)
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Chanock, Stephen J.
(author)
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Christiani, David C.
(author)
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Hung, Rayjean J.
(author)
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Brennan, Paul
(author)
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Landi, Maria Teresa
(author)
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Houlston, Richard S.
(author)
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Amos, Christopher I.
(author)
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Umeå universitetOnkologi
(creator_code:org_t)
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In:Nature Genetics: Springer Science and Business Media LLC46:7, s. 736-7411061-40361546-1718
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- By the author/editor
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Wang, Yufei
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Mckay, James D.
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Rafnar, Thorunn
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Wang, Zhaoming
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Timofeeva, Maria ...
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Broderick, Peter
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Zong, Xuchen
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Laplana, Marina
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Wei, Yongyue
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Han, Younghun
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Lloyd, Amy
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Delahaye-Sourdei ...
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Chubb, Daniel
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Gaborieau, Valer ...
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Wheeler, William
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Chatterjee, Nila ...
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Thorleifsson, Gu ...
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Sulem, Patrick
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Liu, Geoffrey
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Kaaks, Rudolf
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Henrion, Marc
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Kinnersley, Ben
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Vallee, Maxime
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LeCalvez-Kelm, F ...
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Stevens, Victori ...
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Gapstur, Susan M ...
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Chen, Wei V.
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Zaridze, David
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Szeszenia-Dabrow ...
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Lissowska, Jolan ...
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Rudnai, Peter
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Fabianova, Eleon ...
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Mates, Dana
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Bencko, Vladimir
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Foretova, Lenka
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Janout, Vladimir
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Krokan, Hans E.
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Gabrielsen, Maik ...
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Skorpen, Frank
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Vatten, Lars
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Njolstad, Inger
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Chen, Chu
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Goodman, Gary
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Benhamou, Simone
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Vooder, Tonu
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Valk, Kristjan
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Nelis, Mari
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Metspalu, Andres
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Lener, Marcin
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Lubinski, Jan
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Johansson, Matti ...
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Vineis, Paolo
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Agudo, Antonio
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Clavel-Chapelon, ...
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Bueno-de-Mesquit ...
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Trichopoulos, Di ...
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Khaw, Kay-Tee
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Johansson, Mikae ...
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Weiderpass, Elis ...
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Tjonneland, Anne
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Riboli, Elio
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Lathrop, Mark
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Scelo, Ghislaine
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Albanes, Demetri ...
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Caporaso, Neil E ...
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Ye, Yuanqing
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Gu, Jian
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Wu, Xifeng
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Spitz, Margaret ...
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Dienemann, Hendr ...
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Rosenberger, Alb ...
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Su, Li
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Matakidou, Athen ...
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Eisen, Timothy
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Stefansson, Kari
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Risch, Angela
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Chanock, Stephen ...
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Christiani, Davi ...
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Hung, Rayjean J.
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Brennan, Paul
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Landi, Maria Ter ...
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Houlston, Richar ...
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Amos, Christophe ...
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- About the subject
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- MEDICAL AND HEALTH SCIENCES
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MEDICAL AND HEAL ...
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and Clinical Medicin ...
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and Cancer and Oncol ...
- Articles in the publication
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Nature Genetics
- By the university
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Umeå University
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Karolinska Institutet