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- Martinez Barrio, Alvaro,1977-Uppsala universitet,Centrum för bioinformatik,Bongcam-Rudloff (author)
GeneFinder: "in silico" positional cloning of trait genes
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- LIBRIS-ID:oai:DiVA.org:uu-112124
- https://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-112124URI
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- Language:English
- Summary in:English
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- Motivation: Positional cloning of trait genes is extremely laborious and the amount of information available on gene function in different organisms is increasing so rapidly that it is hard for a research group to collect all the relevant information from a number of data sources without performing a large number of manual and time consuming searches. Results: A web service application named GeneFinder was designed and implemented. It collects selected available information related to trait loci within a given chromosomal region that control a specific phenotype. The information contains details on gene function, disease conditions, tissue expression as well as predicted gene homologies in several other species. The information gathered is further ordered by a special-purpose ranking algorithm. A web interface to the GeneFinder web service was also developed where the results are presented in a ranked list easing its interpretation. We explain the design of the architecture, show how our web interface works, and finally test a candidate region. Availability: GeneFinder is publicly available and free to use. The web interface is available at http://www.genefinder.org/.
Subject headings and genre
- MEDICIN OCH HÄLSOVETENSKAP Medicinska och farmaceutiska grundvetenskaper Medicinsk genetik hsv//swe
- MEDICAL AND HEALTH SCIENCES Basic Medicine Medical Genetics hsv//eng
- NATURVETENSKAP Biologi Bioinformatik och systembiologi hsv//swe
- NATURAL SCIENCES Biological Sciences Bioinformatics and Systems Biology hsv//eng
- data integration
- web services
- GWAS
- genome-wide association studies
- Molecular medicine (genetics and pathology)
- Molekylär medicin (genetik och patologi)
- Bioinformatics
- Bioinformatik
- Medical Genetics
- medicinsk genetik
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- Feifei, XuUppsala universitet,Institutionen för evolution, genomik och systematik,Molekylär evolution (author)
- Lagercrantz, ErikDepartment of Animal Breeding and Genetics, Swedish University of Agricultural Sciences,Bongcam-Rudloff (author)
- Bongcam-Rudloff, ErikDepartment of Animal Breeding and Genetics, Swedish University of Agricultural Sciences,Bongcam-Rudloff (author)
- Uppsala universitetCentrum för bioinformatik (creator_code:org_t)
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