Evolution of genes and genomes on the Drosophila phylogeny

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Clark, Andrew G. (author)

Evolution of genes and genomes on the Drosophila phylogeny

Article/chapterEnglish2007

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Springer Science and Business Media LLC,2007
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LIBRIS-ID:oai:DiVA.org:uu-143441
https://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-143441URI
https://doi.org/10.1038/nature06341DOI
https://urn.kb.se/resolve?urn=urn:nbn:se:umu:diva-17941URI

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Language:English
Summary in:English

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SwePubSwePub

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Subject category:ref swepub-contenttype
Subject category:art swepub-publicationtype

Notes

Drosophila 12 Genomes Consortium includes authors from 102 labs. Dan Hultmark contributed to the analysis of genes involved in immunity
Comparative analysis of multiple genomes in a phylogenetic framework dramatically improves the precision and sensitivity of evolutionary inference, producing more robust results than single-genome analyses can provide. The genomes of 12 Drosophila species, ten of which are presented here for the first time (sechellia, simulans, yakuba, erecta, ananassae, persimilis, willistoni, mojavensis, virilis and grimshawi), illustrate how rates and patterns of sequence divergence across taxa can illuminate evolutionary processes on a genomic scale. These genome sequences augment the formidable genetic tools that have made Drosophila melanogaster a pre-eminent model for animal genetics, and will further catalyse fundamental research on mechanisms of development, cell biology, genetics, disease, neurobiology, behaviour, physiology and evolution. Despite remarkable similarities among these Drosophila species, we identified many putatively non-neutral changes in protein-coding genes, non-coding RNA genes, and cis-regulatory regions. These may prove to underlie differences in the ecology and behaviour of these diverse species.

Subject headings and genre

NATURVETENSKAP Biologi hsv//swe
NATURAL SCIENCES Biological Sciences hsv//eng
Biology
Biologi

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Eisen, Michael B. (author)
Smith, Douglas R. (author)
Bergman, Casey M. (author)
Oliver, Brian (author)
Markow, Therese A. (author)
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Chin, CheeWhye (author)
Grabherr, Manfred (author)
Kleber, Michael (author)
Mauceli, Evan (author)
MacCallum, Iain (author)
Drosophila 12 Genomes Consortium, (author)
Uppsala universitetCentrum för bioinformatik (creator_code:org_t)

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By the author/editor: Clark, Andrew G.; Eisen, Michael B ...; Smith, Douglas R ...; Bergman, Casey M ...; Oliver, Brian; Markow, Therese ...; show more...; Kaufman, Thomas ...; Kellis, Manolis; Gelbart, William; Iyer, Venky N.; Pollard, Daniel ...; Sackton, Timothy ...; Larracuente, Ama ...; Singh, Nadia D.; Abad, Jose P.; Abt, Dawn N.; Adryan, Boris; Aguade, Montserr ...; Akashi, Hiroshi; Anderson, Wyatt ...; Aquadro, Charles ...; Ardell, David H.; Arguello, Roman; Artieri, Carlo G ...; Barbash, Daniel ...; Barker, Daniel; Barsanti, Paolo; Batterham, Phil; Batzoglou, Seraf ...; Begun, Dave; Bhutkar, Arjun; Blanco, Enrico; Bosak, Stephanie ...; Bradley, Robert ...; Brand, Adrianne ...; Brent, Michael R ...; Brooks, Angela N ...; Brown, Randall H ...; Butlin, Roger K.; Caggese, Corrado; Calvi, Brian R.; de Carvalho, A. ...; Caspi, Anat; Castrezana, Serg ...; Celniker, Susan ...; Chang, Jean L.; Chapple, Charles; Chatterji, Soura ...; Chinwalla, Asif; Civetta, Alberto; Clifton, Sandra ...; Comeron, Josep M ...; Costello, James ...; Coyne, Jerry A.; Daub, Jennifer; David, Robert G.; Delcher, Arthur ...; Delehaunty, Kim; Do, Chuong B.; Ebling, Heather; Edwards, Kevin; Eickbush, Thomas; Evans, Jay D.; Filipski, Alan; Findeiss, Sven; Freyhult, Eva, 1 ...; Fulton, Lucinda; Fulton, Robert; Garcia, Ana C. L ...; Gardiner, Anasta ...; Garfield, David ...; Garvin, Barry E.; Gibson, Greg; Gilbert, Don; Gnerre, Sante; Godfrey, Jennife ...; Good, Robert; Gotea, Valer; Gravely, Brenton; Greenberg, Antho ...; Griffiths-Jones, ...; Gross, Samuel; Guigo, Roderic; Gustafson, Erik ...; Haerty, Wilfried; Hahn, Matthew W.; Halligan, Daniel ...; Halpern, Aaron L ...; Halter, Gillian ...; Han, Mira V.; Heger, Andreas; Hillier, LaDeana; Hinrichs, Angie ...; Holmes, Ian; Hoskins, Roger A ...; Hubisz, Melissa ...; Hultmark, Dan; Huntley, Melanie ...; Jaffe, David B.; Jagadeeshan, San ...; Jeck, William R.; Johnson, Justin; Jones, Corbin D.; Jordan, William ...; Karpen, Gary H.; Kataoka, Eiko; Keightley, Peter ...; Kheradpour, Pouy ...; Kirkness, Ewen F ...; Koerich, Leonard ...; Kristiansen, Kar ...; Kudrna, Dave; Kulathinal, Rob ...; Kumar, Sudhir; Kwok, Roberta; Lander, Eric; Langley, Charles ...; Lapoint, Richard; Lazzaro, Brian P ...; Lee, So-Jeong; Levesque, Lisa; Li, Ruiqiang; Lin, Chiao-Feng; Lin, Michael F.; Lindblad-Toh, Ke ...; Llopart, Ana; Long, Manyuan; Low, Lloyd; Lozovsky, Elena; Lu, Jian; Luo, Meizhong; Machado, Carlos ...; Makalowski, Wojc ...; Marzo, Mar; Matsuda, Muneo; Matzkin, Luciano; McAllister, Brya ...; McBride, Carolyn ...; McKernan, Brenda ...; McKernan, Kevin; Mendez-Lago, Mar ...; Minx, Patrick; Mollenhauer, Mic ...; Montooth, Kristi; Mount, Stephen M ...; Mu, Xu; Myers, Eugene; Negre, Barbara; Newfeld, Stuart; Nielsen, Rasmus; Noor, Mohamed A. ...; O'Grady, Patrick; Pachter, Lior; Papaceit, Montse ...; Parisi, Matthew ...; Parisi, Michael; Parts, Leopold; Pedersen, Jakob ...; Pesole, Graziano; Phillippy, Adam ...; Ponting, Chris P ...; Pop, Mihai; Porcelli, Damian ...; Powell, Jeffrey ...; Prohaska, Sonja; Pruitt, Kim; Puig, Marta; Quesneville, Had ...; Ram, Kristipati ...; Rand, David; Rasmussen, Matth ...; Reed, Laura K.; Reenan, Robert; Reily, Amy; Remington, Karin ...; Rieger, Tania T.; Ritchie, Michael ...; Robin, Charles; Rogers, Yu-Hui; Rohde, Claudia; Rozas, Julio; Rubenfield, Marc ...; Ruiz, Alfredo; Russo, Susan; Salzberg, Steven ...; Sanchez-Gracia, ...; Saranga, David J ...; Sato, Hajime; Schaeffer, Steph ...; Schatz, Michael ...; Schlenke, Todd; Schwartz, Russel ...; Segarra, Carmen; Singh, Rama S.; Sirot, Laura; Sirota, Marina; Sisneros, Nichol ...; Smith, Chris D.; Smith, Temple F.; Spieth, John; Stage, Deborah E ...; Stark, Alexander; Stephan, Wolfgan ...; Strausberg, Robe ...; Strempel, Sebast ...; Sturgill, David; Sutton, Granger; Sutton, Granger ...; Tao, Wei; Teichmann, Sarah; Tobari, Yoshiko ...; Tomimura, Yoshih ...; Tsolas, Jason M.; Valente, Vera L. ...; Venter, Eli; Venter, J. Craig; Vicario, Saverio; Vieira, Filipe G ...; Vilella, Albert ...; Villasante, Alfr ...; Walenz, Brian; Wang, Jun; Wasserman, Marvi ...; Watts, Thomas; Wilson, Derek; Wilson, Richard ...; Wing, Rod A.; Wolfner, Mariana ...; Wong, Alex; Wong, Gane Ka-Sh ...; Wu, Chung-I; Wu, Gabriel; Yamamoto, Daisuk ...; Yang, Hsiao-Pei; Yang, Shiaw-Pyng; Yorke, James A.; Yoshida, Kiyohit ...; Zdobnov, Evgeny; Zhang, Peili; Zhang, Yu; Zimin, Aleksey V ...; Baldwin, Jennife ...; Abdouelleil, Amr; Abdulkadir, Jama ...; Abebe, Adal; Abera, Brikti; Abreu, Justin; Acer, St Christo ...; Aftuck, Lynne; Alexander, Allen; An, Peter; Anderson, Erica; Anderson, Scott; Arachi, Harindra; Azer, Marc; Bachantsang, Pas ...; Barry, Andrew; Bayul, Tashi; Berlin, Aaron; Bessette, Daniel; Bloom, Toby; Blye, Jason; Boguslavskiy, Le ...; Bonnet, Claude; Boukhgalter, Bor ...; Bourzgui, Imane; Brown, Adam; Cahill, Patrick; Channer, Sherido ...; Cheshatsang, Yam ...; Chuda, Lisa; Citroen, Mieke; Collymore, Alvil ...; Cooke, Patrick; Costello, Maura; D'Aco, Katie; Daza, Riza; De Haan, Georgiu ...; DeGray, Stuart; DeMaso, Christin ...; Dhargay, Norbu; Dooley, Kimberly; Dooley, Erin; Doricent, Missol ...; Dorje, Passang; Dorjee, Kunsang; Dupes, Alan; Elong, Richard; Falk, Jill; Farina, Abderrah ...; Faro, Susan; Ferguson, Diallo; Fisher, Sheila; Foley, Chelsea D ...; Franke, Alicia; Friedrich, Denni ...; Gadbois, Loryn; Gearin, Gary; Gearin, Christin ...; Giannoukos, Geor ...; Goode, Tina; Graham, Joseph; Grandbois, Edwar ...; Grewal, Sharleen; Gyaltsen, Kunsan ...; Hafez, Nabil; Hagos, Birhane; Hall, Jennifer; Henson, Charlott ...; Hollinger, Andre ...; Honan, Tracey; Huard, Monika D.; Hughes, Leanne; Hurhula, Brian; Husby, M. Erii; Kamat, Asha; Kanga, Ben; Kashin, Seva; Khazanovich, Dmi ...; Kisner, Peter; Lance, Krista; Lara, Marcia; Lee, William; Lennon, Niall; Letendre, France ...; LeVine, Rosie; Lipovsky, Alex; Liu, Xiaohong; Liu, Jinlei; Liu, Shangtao; Lokyitsang, Tash ...; Lokyitsang, Yesh ...; Lubonja, Rakela; Lui, Annie; MacDonald, Pen; Magnisalis, Vasi ...; Maru, Kebede; Matthews, Charle ...; McCusker, Willia ...; McDonough, Susan; Mehta, Teena; Meldrim, James; Meneus, Louis; Mihai, Oana; Mihalev, Atanas; Mihova, Tanya; Mittelman, Rache ...; Mlenga, Valentin ...; Montmayeur, Anna; Mulrain, Leonida ...; Navidi, Adam; Naylor, Jerome; Negash, Tamrat; Nguyen, Thu; Nguyen, Nga; Nicol, Robert; Norbu, Choe; Norbu, Nyima; Novod, Nathaniel; O'Neill, Barry; Osman, Sahal; Markiewicz, Eva; Oyono, Otero L.; Patti, Christoph ...; Phunkhang, Pema; Pierre, Fritz; Priest, Margaret; Raghuraman, Suja ...; Rege, Filip; Reyes, Rebecca; Rise, Cecil; Rogov, Peter; Ross, Keenan; Ryan, Elizabeth; Settipalli, Samp ...; Shea, Terry; Sherpa, Ngawang; Shi, Lu; Shih, Diana; Sparrow, Todd; Spaulding, Jessi ...; Stalker, John; Stange-Thomann, ...; Stavropoulos, Sh ...; Stone, Catherine; Strader, Christo ...; Tesfaye, Senait; Thomson, Talene; Thoulutsang, Yam ...; Thoulutsang, Daw ...; Topham, Kerri; Topping, Ira; Tsamla, Tsamla; Vassiliev, Helen; Vo, Andy; Wangchuk, Tserin ...; Wangdi, Tsering; Weiand, Michael; Wilkinson, Jane; Wilson, Adam; Yadav, Shailendr ...; Young, Geneva; Yu, Qing; Zembek, Lisa; Zhong, Danni; Zimmer, Andrew; Zwirko, Zac; Alvarez, Pablo; Brockman, Will; Butler, Jonathan; Chin, CheeWhye; Grabherr, Manfre ...; Kleber, Michael; Mauceli, Evan; MacCallum, Iain; Drosophila 12 Ge ...; show less...

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