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Genomic insights in...
Genomic insights into salt adaptation in a desert poplar
- Article/chapterEnglish2013
Publisher, publication year, extent ...
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2013-11-21
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Springer Science and Business Media LLC,2013
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printrdacarrier
Numbers
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LIBRIS-ID:oai:DiVA.org:uu-214049
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https://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-214049URI
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https://doi.org/10.1038/ncomms3797DOI
Supplementary language notes
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Language:English
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Summary in:English
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Classification
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Subject category:ref swepub-contenttype
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Subject category:art swepub-publicationtype
Notes
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Despite the high economic and ecological importance of forests, our knowledge of the genomic evolution of trees under salt stress remains very limited. Here we report the genome sequence of the desert poplar, Populus euphratica, which exhibits high tolerance to salt stress. Its genome is very similar and collinear to that of the closely related mesophytic congener, P. trichocarpa. However, we find that several gene families likely to be involved in tolerance to salt stress contain significantly more gene copies within the P. euphratica lineage. Furthermore, genes showing evidence of positive selection are significantly enriched in functional categories related to salt stress. Some of these genes, and others within the same categories, are significantly upregulated under salt stress relative to their expression in another salt-sensitive poplar. Our results provide an important background for understanding tree adaptation to salt stress and facilitating the genetic improvement of cultivated poplars for saline soils.
Subject headings and genre
Added entries (persons, corporate bodies, meetings, titles ...)
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Wang, Junyi
(author)
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Zhou, Gongke
(author)
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Yue, Zhen
(author)
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Hu, Quanjun
(author)
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Chen, Yan
(author)
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Liu, Bingbing
(author)
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Qiu, Qiang
(author)
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Wang, Zhuo
(author)
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Zhang, Jian
(author)
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Wang, Kun
(author)
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Jiang, Dechun
(author)
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Gou, Caiyun
(author)
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Yu, Lili
(author)
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Zhan, Dongliang
(author)
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Zhou, Ran
(author)
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Luo, Wenchun
(author)
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Ma, Hui
(author)
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Yang, Yongzhi
(author)
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Pan, Shengkai
(author)
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Fang, Dongming
(author)
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Luo, Yadan
(author)
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Wang, Xia
(author)
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Wang, Gaini
(author)
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Wang, Juan
(author)
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Wang, Qian
(author)
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Lu, Xu
(author)
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Chen, Zhe
(author)
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Liu, Jinchao
(author)
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Lu, Yao
(author)
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Yin, Ye
(author)
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Yang, Huanming
(author)
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Abbott, Richard J.
(author)
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Wu, Yuxia
(author)
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Wan, Dongshi
(author)
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Li, Jia
(author)
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Yin, Tongming
(author)
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Lascoux, MartinUppsala universitet,Växtekologi och evolution(Swepub:uu)martlasc
(author)
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DiFazio, Stephen P.
(author)
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Tuskan, Gerald A.
(author)
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Wang, Jun
(author)
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Jianquan, Liu
(author)
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Uppsala universitetVäxtekologi och evolution
(creator_code:org_t)
Related titles
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In:Nature Communications: Springer Science and Business Media LLC4, s. 2797-2041-1723
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To the university's database
- By the author/editor
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Ma, Tao
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Wang, Junyi
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Zhou, Gongke
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Yue, Zhen
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Hu, Quanjun
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Chen, Yan
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show more...
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Liu, Bingbing
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Qiu, Qiang
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Wang, Zhuo
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Zhang, Jian
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Wang, Kun
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Jiang, Dechun
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Gou, Caiyun
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Yu, Lili
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Zhan, Dongliang
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Zhou, Ran
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Luo, Wenchun
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Ma, Hui
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Yang, Yongzhi
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Pan, Shengkai
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Fang, Dongming
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Luo, Yadan
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Wang, Xia
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Wang, Gaini
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Wang, Juan
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Wang, Qian
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Lu, Xu
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Chen, Zhe
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Liu, Jinchao
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Lu, Yao
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Yin, Ye
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Yang, Huanming
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Abbott, Richard ...
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Wu, Yuxia
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Wan, Dongshi
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Li, Jia
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Yin, Tongming
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Lascoux, Martin
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DiFazio, Stephen ...
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Tuskan, Gerald A ...
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Wang, Jun
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Jianquan, Liu
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- NATURAL SCIENCES
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NATURAL SCIENCES
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and Biological Scien ...
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and Evolutionary Bio ...
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Nature Communica ...
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Uppsala University