Search: onr:"swepub:oai:DiVA.org:uu-283187" >
The Gypsy Database ...
The Gypsy Database (GyDB) of mobile genetic elements : release 2.0.
- Article/chapterEnglish2011
Publisher, publication year, extent ...
-
2010-10-29
-
Oxford University Press (OUP),2011
-
printrdacarrier
Numbers
-
LIBRIS-ID:oai:DiVA.org:uu-283187
-
https://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-283187URI
-
https://doi.org/10.1093/nar/gkq1061DOI
Supplementary language notes
-
Language:English
-
Summary in:English
Part of subdatabase
Classification
-
Subject category:ref swepub-contenttype
-
Subject category:art swepub-publicationtype
Notes
-
This article introduces the second release of the Gypsy Database of Mobile Genetic Elements (GyDB 2.0): a research project devoted to the evolutionary dynamics of viruses and transposable elements based on their phylogenetic classification (per lineage and protein domain). The Gypsy Database (GyDB) is a long-term project that is continuously progressing, and that owing to the high molecular diversity of mobile elements requires to be completed in several stages. GyDB 2.0 has been powered with a wiki to allow other researchers participate in the project. The current database stage and scope are long terminal repeats (LTR) retroelements and relatives. GyDB 2.0 is an update based on the analysis of Ty3/Gypsy, Retroviridae, Ty1/Copia and Bel/Pao LTR retroelements and the Caulimoviridae pararetroviruses of plants. Among other features, in terms of the aforementioned topics, this update adds: (i) a variety of descriptions and reviews distributed in multiple web pages; (ii) protein-based phylogenies, where phylogenetic levels are assigned to distinct classified elements; (iii) a collection of multiple alignments, lineage-specific hidden Markov models and consensus sequences, called GyDB collection; (iv) updated RefSeq databases and BLAST and HMM servers to facilitate sequence characterization of new LTR retroelement and caulimovirus queries; and (v) a bibliographic server. GyDB 2.0 is available at http://gydb.org.
Subject headings and genre
Added entries (persons, corporate bodies, meetings, titles ...)
-
Futami, Ricardo
(author)
-
Covelli, Laura
(author)
-
Domínguez-Escribá, Laura
(author)
-
Viu, Jose M
(author)
-
Tamarit, DanielUppsala universitet,Molekylär evolution(Swepub:uu)danta608
(author)
-
Aguilar-Rodríguez, Jose
(author)
-
Vicente-Ripolles, Miguel
(author)
-
Fuster, Gonzalo
(author)
-
Bernet, Guillermo P
(author)
-
Maumus, Florian
(author)
-
Munoz-Pomer, Alfonso
(author)
-
Sempere, Jose M
(author)
-
Latorre, Amparo
(author)
-
Moya, Andres
(author)
-
Uppsala universitetMolekylär evolution
(creator_code:org_t)
Related titles
-
In:Nucleic Acids Research: Oxford University Press (OUP)39:Database issue0305-10481362-4962
Internet link
Find in a library
To the university's database
- By the author/editor
-
Llorens, Carlos
-
Futami, Ricardo
-
Covelli, Laura
-
Domínguez-Escrib ...
-
Viu, Jose M
-
Tamarit, Daniel
-
show more...
-
Aguilar-Rodrígue ...
-
Vicente-Ripolles ...
-
Fuster, Gonzalo
-
Bernet, Guillerm ...
-
Maumus, Florian
-
Munoz-Pomer, Alf ...
-
Sempere, Jose M
-
Latorre, Amparo
-
Moya, Andres
-
show less...
- About the subject
-
- NATURAL SCIENCES
-
NATURAL SCIENCES
-
and Biological Scien ...
-
and Bioinformatics a ...
- Articles in the publication
-
Nucleic Acids Re ...
- By the university
-
Uppsala University