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Search: onr:"swepub:oai:DiVA.org:uu-382011" > The structural basi...

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The structural basis for release-factor activation during translation termination revealed by time-resolved cryogenic electron microscopy

Fu, Ziao (author)
Department of Biochemistry and Molecular Biophysics, Columbia University, New York, USA
Indrisiunaite, Gabriele (author)
Uppsala universitet,Molekylärbiologi
Kaledhonkar, Sandip (author)
Department of Biochemistry and Molecular Biophysics, Columbia University, New York, USA
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Shah, Binita (author)
Department of Biological Sciences, Barnard College, New York, USA
Sun, Ming (author)
Department of Biological Sciences, Colmbia University, New York, USA
Chen, Bo (author)
Department of Biological Sciences, Colmbia University, New York, USA
Grassucci, Robert A. (author)
Department of Biochemistry and Molecular Biophysics, Columbia University, New York, USA
Ehrenberg, Måns (author)
Uppsala universitet,Molekylärbiologi
Frank, Joachim (author)
Department of Biochemistry and Molecular Biophysics, Columbia University, New York, USA; Department of Biological Sciences, Colmbia University, New York, USA
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 (creator_code:org_t)
2019-06-12
2019
English.
In: Nature Communications. - : Springer Science and Business Media LLC. - 2041-1723. ; 10
  • Journal article (peer-reviewed)
Abstract Subject headings
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  • When the ribosome encounters a stop codon, it recruits a release factor (RF) to hydrolyze the ester bond between the peptide chain and tRNA. RFs have structural motifs that recognize stop codons in the decoding center and a GGQ motif for induction of hydrolysis in the peptidyl transfer center 70 Å away. Surprisingly, free RF2 is compact, with only 20 Å between its codon-reading and GGQ motifs. Cryo-EM showed that ribosome-bound RFs have extended structures, suggesting that RFs are compact when entering the ribosome and then extend their structures upon stop codon recognition. Here we use time-resolved cryo-EM to visualize transient compact forms of RF1 and RF2 at 3.5 and 4 Å resolution, respectively, in the codon-recognizing ribosome complex on the native pathway. About 25% of complexes have RFs in the compact state at 24 ms reaction time, and within 60 ms virtually all ribosome-bound RFs are transformed to their extended forms.

Subject headings

NATURVETENSKAP  -- Biologi -- Biokemi och molekylärbiologi (hsv//swe)
NATURAL SCIENCES  -- Biological Sciences -- Biochemistry and Molecular Biology (hsv//eng)

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