Machine Learning for Large-Scale Quality Control of 3D Shape Models in Neuroimaging

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MARC

Petrov, Dmitry (author)

Machine Learning for Large-Scale Quality Control of 3D Shape Models in Neuroimaging

Article/chapterEnglish2017

Publisher, publication year, extent ...

2017-09-07
Cham :Springer International Publishing,2017
electronicrdacarrier

Numbers

LIBRIS-ID:oai:DiVA.org:uu-440809
https://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-440809URI
https://doi.org/10.1007/978-3-319-67389-9_43DOI
http://kipublications.ki.se/Default.aspx?queryparsed=id:230035274URI

Supplementary language notes

Language:English
Summary in:English

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SwePubSwePub

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Subject category:ref swepub-contenttype
Subject category:art swepub-publicationtype

Notes

As very large studies of complex neuroimaging phenotypes become more common, human quality assessment of MRI-derived data remains one of the last major bottlenecks. Few attempts have so far been made to address this issue with machine learning. In this work, we optimize predictive models of quality for meshes representing deep brain structure shapes. We use standard vertex-wise and global shape features computed homologously across 19 cohorts and over 7500 human-rated subjects, training kernelized Support Vector Machine and Gradient Boosted Decision Trees classifiers to detect meshes of failing quality. Our models generalize across datasets and diseases, reducing human workload by 30-70%, or equivalently hundreds of human rater hours for datasets of comparable size, with recall rates approaching inter-rater reliability.

Subject headings and genre

MEDICIN OCH HÄLSOVETENSKAP Klinisk medicin Radiologi och bildbehandling hsv//swe
MEDICAL AND HEALTH SCIENCES Clinical Medicine Radiology, Nuclear Medicine and Medical Imaging hsv//eng
machine learning
quality control
shape analysis

Added entries (persons, corporate bodies, meetings, titles ...)

Gutman, Boris A (author)
Yu, Shih-Hua Julie (author)
van Erp, Theo G M (author)
Turner, Jessica A (author)
Schmaal, Lianne (author)
Veltman, Dick (author)
Wang, Lei (author)
Alpert, Kathryn (author)
Isaev, Dmitry (author)
Zavaliangos-Petropulu, Artemis (author)
Ching, Christopher R K (author)
Calhoun, Vince (author)
Glahn, David (author)
Satterthwaite, Theodore D (author)
Andreasen, Ole Andreas (author)
Borgwardt, Stefan (author)
Howells, Fleur (author)
Groenewold, Nynke (author)
Voineskos, Aristotle (author)
Radua, JoaquimKarolinska Institutet (author)
Potkin, Steven G (author)
Crespo-Facorro, Benedicto (author)
Tordesillas-Gutiérrez, Diana (author)
Shen, Li (author)
Lebedeva, Irina (author)
Spalletta, Gianfranco (author)
Donohoe, Gary (author)
Kochunov, Peter (author)
Rosa, Pedro G P (author)
James, Anthony (author)
Dannlowski, Udo (author)
Baune, Bernhard T (author)
Aleman, André (author)
Gotlib, Ian H (author)
Walter, Henrik (author)
Walter, Martin (author)
Soares, Jair CKarolinska Institutet (author)
Ehrlich, Stefan (author)
Gur, Ruben C (author)
Doan, N Trung (author)
Agartz, IngridKarolinska Institutet (author)
Westlye, Lars T (author)
Harrisberger, Fabienne (author)
Riecher-Rössler, Anita (author)
Uhlmann, Anne (author)
Stein, Dan J (author)
Dickie, Erin W (author)
Pomarol-Clotet, Edith (author)
Fuentes-Claramonte, Paola (author)
Canales-Rodríguez, Erick Jorge (author)
Salvador, Raymond (author)
Huang, Alexander J (author)
Roiz-Santiañez, Roberto (author)
Cong, Shan (author)
Tomyshev, Alexander (author)
Piras, Fabrizio (author)
Vecchio, Daniela (author)
Banaj, Nerisa (author)
Ciullo, Valentina (author)
Hong, Elliot (author)
Busatto, Geraldo (author)
Zanetti, Marcus V (author)
Serpa, Mauricio H (author)
Cervenka, SimonCentre for Psychiatry Research, Department of Clinical Neuroscience, Karolinska Institutet, Stockholm, Sweden(Swepub:uu)simce160 (author)
Kelly, Sinead (author)
Grotegerd, Dominik (author)
Sacchet, Matthew D (author)
Veer, Ilya M (author)
Li, Meng (author)
Wu, Mon-Ju (author)
Irungu, Benson (author)
Walton, Esther (author)
Thompson, Paul M (author)
Karolinska InstitutetCentre for Psychiatry Research, Department of Clinical Neuroscience, Karolinska Institutet, Stockholm, Sweden (creator_code:org_t)

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In:Machine learning in medical imaging. MLMI (Workshop)Cham : Springer International Publishing10541, s. 371-378

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By the author/editor: Petrov, Dmitry; Gutman, Boris A; Yu, Shih-Hua Jul ...; van Erp, Theo G ...; Turner, Jessica ...; Schmaal, Lianne; show more...; Veltman, Dick; Wang, Lei; Alpert, Kathryn; Isaev, Dmitry; Zavaliangos-Petr ...; Ching, Christoph ...; Calhoun, Vince; Glahn, David; Satterthwaite, T ...; Andreasen, Ole A ...; Borgwardt, Stefa ...; Howells, Fleur; Groenewold, Nynk ...; Voineskos, Arist ...; Radua, Joaquim; Potkin, Steven G; Crespo-Facorro, ...; Tordesillas-Guti ...; Shen, Li; Lebedeva, Irina; Spalletta, Gianf ...; Donohoe, Gary; Kochunov, Peter; Rosa, Pedro G P; James, Anthony; Dannlowski, Udo; Baune, Bernhard ...; Aleman, André; Gotlib, Ian H; Walter, Henrik; Walter, Martin; Soares, Jair C; Ehrlich, Stefan; Gur, Ruben C; Doan, N Trung; Agartz, Ingrid; Westlye, Lars T; Harrisberger, Fa ...; Riecher-Rössler, ...; Uhlmann, Anne; Stein, Dan J; Dickie, Erin W; Pomarol-Clotet, ...; Fuentes-Claramon ...; Canales-Rodrígue ...; Salvador, Raymon ...; Huang, Alexander ...; Roiz-Santiañez, ...; Cong, Shan; Tomyshev, Alexan ...; Piras, Fabrizio; Vecchio, Daniela; Banaj, Nerisa; Ciullo, Valentin ...; Hong, Elliot; Busatto, Geraldo; Zanetti, Marcus ...; Serpa, Mauricio ...; Cervenka, Simon; Kelly, Sinead; Grotegerd, Domin ...; Sacchet, Matthew ...; Veer, Ilya M; Li, Meng; Wu, Mon-Ju; Irungu, Benson; Walton, Esther; Thompson, Paul M; show less...

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MEDICAL AND HEALTH SCIENCES: MEDICAL AND HEAL ...; and Clinical Medicin ...; and Radiology Nuclea ...

Articles in the publication: Machine learning ...

By the university: Uppsala University; Karolinska Institutet

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