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Unsupervised Domain...
Unsupervised Domain Adaptation with Contrastive Learning for OCT Segmentation
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- Gomariz, Alvaro (author)
- F Hoffmann La Roche & Cie AG, Basel, Switzerland.
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- Lu, Huanxiang (author)
- F Hoffmann La Roche & Cie AG, Basel, Switzerland.
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- Li, Yun Yvonna (author)
- F Hoffmann La Roche & Cie AG, Basel, Switzerland.
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- Albrecht, Thomas (author)
- F Hoffmann La Roche & Cie AG, Basel, Switzerland.
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- Maunz, Andreas (author)
- F Hoffmann La Roche & Cie AG, Basel, Switzerland.
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- Benmansour, Fethallah (author)
- F Hoffmann La Roche & Cie AG, Basel, Switzerland.
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- Valcarcel, Alessandra M. (author)
- Genentech Inc, South San Francisco, CA USA.
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- Luu, Jennifer (author)
- Genentech Inc, South San Francisco, CA USA.
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- Ferrara, Daniela (author)
- Genentech Inc, South San Francisco, CA USA.
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- Göksel, Orcun (author)
- Uppsala universitet,Avdelningen Vi3,Bildanalys och människa-datorinteraktion,Swiss Fed Inst Technol, Comp Assisted Applicat Med, Zurich, Switzerland.
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F Hoffmann La Roche & Cie AG, Basel, Switzerland Genentech Inc, South San Francisco, CA USA. (creator_code:org_t)
- 2022-09-16
- 2022
- English.
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In: Medical Image Computing and Computer Assisted Intervention, MICCAI 2022, pt viii. - Cham : Springer Nature. - 9783031164521 - 9783031164514 ; , s. 351-361
- Related links:
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https://urn.kb.se/re...
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https://doi.org/10.1...
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Abstract
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- Accurate segmentation of retinal fluids in 3D Optical Coherence Tomography images is key for diagnosis and personalized treatment of eye diseases. While deep learning has been successful at this task, trained supervised models often fail for images that do not resemble labeled examples, e.g. for images acquired using different devices. We hereby propose a novel semi-supervised learning framework for segmentation of volumetric images from new unlabeled domains. We jointly use supervised and contrastive learning, also introducing a contrastive pairing scheme that leverages similarity between nearby slices in 3D. In addition, we propose channel-wise aggregation as an alternative to conventional spatial-pooling aggregation for contrastive feature map projection. We evaluate our methods for domain adaptation from a (labeled) source domain to an (unlabeled) target domain, each containing images acquired with different acquisition devices. In the target domain, our method achieves a Dice coefficient 13.8% higher than SimCLR (a state-of-the-art contrastive framework), and leads to results comparable to an upper bound with supervised training in that domain. In the source domain, our model also improves the results by 5.4% Dice, by successfully leveraging information from many unlabeled images.
Subject headings
- NATURVETENSKAP -- Data- och informationsvetenskap -- Datavetenskap (hsv//swe)
- NATURAL SCIENCES -- Computer and Information Sciences -- Computer Sciences (hsv//eng)
Keyword
- Segmentation of 3D volumes
- Semi-supervised learning
- Computerized Image Processing
- Datoriserad bildbehandling
Publication and Content Type
- ref (subject category)
- kon (subject category)
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- By the author/editor
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Gomariz, Alvaro
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Lu, Huanxiang
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Li, Yun Yvonna
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Albrecht, Thomas
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Maunz, Andreas
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Benmansour, Feth ...
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show more...
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Valcarcel, Aless ...
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Luu, Jennifer
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Ferrara, Daniela
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Göksel, Orcun
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- About the subject
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- NATURAL SCIENCES
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NATURAL SCIENCES
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and Computer and Inf ...
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and Computer Science ...
- Articles in the publication
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Medical Image Co ...
- By the university
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Uppsala University