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A baseline for the ...
A baseline for the genetic stock identification of Atlantic herring, Clupea harengus, in ICES Divisions 6.a, 7.b-c
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- Farrell, Edward D. D. (author)
- EDF Sci Ltd, Ladysbridge, Cork, Ireland.;Univ Coll Dublin, Earth Inst, Sci Ctr West, Sch Biol & Environm Sci,Area 52 Res Grp, Dublin, Ireland.
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- Andersson, Leif (author)
- Swedish University of Agricultural Sciences,Sveriges lantbruksuniversitet,Uppsala universitet,Institutionen för medicinsk biokemi och mikrobiologi,Science for Life Laboratory, SciLifeLab,Uppsala Univ, Dept MedTexas A&M Univ, Dept Vet Integrat Biosci, College Stn, TX USA.;Swedish Univ Agr Sci, Dept Anim Breeding & Genet, Uppsala, Sweden.,Institutionen för husdjursgenetik (HGEN),Department of Animal Breeding and Genetics,Uppsala University,Texas AandM University College Station
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- Bekkevold, Dorte (author)
- Tech Univ Denmark, Natl Inst Aquat Resources, Silkeborg, Denmark.
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- Campbell, Neil (author)
- Marine Scotland Sci, 375 Victoria Rd, Aberdeen 119, Scotland.
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- Carlsson, Jens (author)
- Univ Coll Dublin, Earth Inst, Sci Ctr West, Sch Biol & Environm Sci,Area 52 Res Grp, Dublin, Ireland.
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- Clarke, Maurice W. W. (author)
- Marine Inst, Galway, Ireland.
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- Egan, Afra (author)
- Marine Inst, Galway, Ireland.
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- Folkvord, Arild (author)
- Univ Bergen, Dept Biol Sci, Bergen, Norway.
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- Gras, Michael (author)
- Marine Inst, Galway, Ireland.;European Commiss, Joint Res Ctr JRC, Ispra, Italy.
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- Lusseau, Susan Maersk (author)
- Marine Scotland Sci, 375 Victoria Rd, Aberdeen 119, Scotland.;Natl Inst Aquat Resources, Willemoesvej 2,Hovedbygning 067, DK-9850 Hirtshals, Denmark.
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- Mackinson, Steven (author)
- Scottish Pelag Fishermens Assoc, Heritage House,135-139 Shore St, Fraserburgh, Aberdeen, Scotland.
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- Nolan, Cormac (author)
- Marine Inst, Galway, Ireland.
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- O'Connell, Steven (author)
- Marine Scotland Sci, 375 Victoria Rd, Aberdeen 119, Scotland.
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- O'Malley, Michael (author)
- Marine Inst, Galway, Ireland.
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- Pastoors, Martin (author)
- Pelag Freezer Trawler Assoc, Louis Braillelaan 80, NL-2719 EK Zoetermeer, Netherlands.
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- Pettersson, Mats (author)
- Uppsala universitet,Institutionen för medicinsk biokemi och mikrobiologi,Science for Life Laboratory, SciLifeLab
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- White, Emma (author)
- Marine Inst, Galway, Ireland.
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EDF Sci Ltd, Ladysbridge, Cork, Ireland;Univ Coll Dublin, Earth Inst, Sci Ctr West, Sch Biol & Environm Sci,Area 52 Res Grp, Dublin, Ireland. Institutionen för medicinsk biokemi och mikrobiologi (creator_code:org_t)
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- 2022-09-07
- 2022
- English.
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In: Royal Society Open Science. - : The Royal Society. - 2054-5703. ; 9:9
- Related links:
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Abstract
Subject headings
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- Atlantic herring in International Council for Exploration of the Sea (ICES) Divisions 6.a, 7.b-c comprises at least three populations, distinguished by temporal and spatial differences in spawning, which have until recently been managed as two stocks defined by geographical delineators. Outside of spawning the populations form mixed aggregations, which are the subject of acoustic surveys. The inability to distinguish the populations has prevented the development of separate survey indices and separate stock assessments. A panel of 45 single-nucleotide polymorphisms, derived from whole-genome sequencing, were used to genotype 3480 baseline spawning samples (2014-2021). A temporally stable baseline comprising 2316 herring from populations known to inhabit Division 6.a was used to develop a genetic assignment method, with a self-assignment accuracy greater than 90%. The long-term temporal stability of the assignment model was validated by assigning archive (2003-2004) baseline samples (270 individuals) with a high level of accuracy. Assignment of non-baseline samples (1514 individuals) from Divisions 6.a, 7.b-c indicated previously unrecognized levels of mixing of populations outside of the spawning season. The genetic markers and assignment models presented constitute a 'toolbox' that can be used for the assignment of herring caught in mixed survey and commercial catches in Division 6.a into their population of origin with a high level of accuracy.
Subject headings
- NATURVETENSKAP -- Biologi -- Ekologi (hsv//swe)
- NATURAL SCIENCES -- Biological Sciences -- Ecology (hsv//eng)
- LANTBRUKSVETENSKAPER -- Lantbruksvetenskap, skogsbruk och fiske -- Fisk- och akvakulturforskning (hsv//swe)
- AGRICULTURAL SCIENCES -- Agriculture, Forestry and Fisheries -- Fish and Aquacultural Science (hsv//eng)
- LANTBRUKSVETENSKAPER -- Annan lantbruksvetenskap -- Vilt- och fiskeförvaltning (hsv//swe)
- AGRICULTURAL SCIENCES -- Other Agricultural Sciences -- Fish and Wildlife Management (hsv//eng)
Keyword
- fisheries
- management
- genetic assignment
- stock identification
- Northwest herring
- West of Scotland herring
Publication and Content Type
- ref (subject category)
- art (subject category)
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- By the author/editor
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Farrell, Edward ...
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Andersson, Leif
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Bekkevold, Dorte
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Campbell, Neil
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Carlsson, Jens
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Clarke, Maurice ...
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show more...
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Egan, Afra
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Folkvord, Arild
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Gras, Michael
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Lusseau, Susan M ...
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Mackinson, Steve ...
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Nolan, Cormac
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O'Connell, Steve ...
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O'Malley, Michae ...
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Pastoors, Martin
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Pettersson, Mats
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White, Emma
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show less...
- About the subject
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- NATURAL SCIENCES
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NATURAL SCIENCES
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and Biological Scien ...
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and Ecology
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- AGRICULTURAL SCIENCES
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AGRICULTURAL SCI ...
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and Agriculture Fore ...
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and Fish and Aquacul ...
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- AGRICULTURAL SCIENCES
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AGRICULTURAL SCI ...
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and Other Agricultur ...
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and Fish and Wildlif ...
- Articles in the publication
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Royal Society Op ...
- By the university
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Uppsala University
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Swedish University of Agricultural Sciences