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Dynamics of release factor recycling during translation termination in bacteria

Prabhakar, Arjun (author)
Stanford Univ, Dept Struct Biol, Sch Med, Stanford, CA 94305 USA.;Stanford Univ, Program Biophys, Stanford, CA USA.;Pacific Biosci Inc, Menlo Pk, CA 94025 USA
Pavlov, Michael Y. (author)
Uppsala universitet,Molekylärbiologi
Zhang, Jingji (author)
Stanford Univ, Dept Struct Biol, Sch Med, Stanford, CA 94305 USA
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Indrisiunaite, Gabriele (author)
Uppsala universitet,Molekylärbiologi
Wang, Jinfan (author)
Stanford Univ, Dept Struct Biol, Sch Med, Stanford, CA 94305 USA
Lawson, Michael R. (author)
Stanford Univ, Dept Struct Biol, Sch Med, Stanford, CA 94305 USA
Ehrenberg, Måns (author)
Uppsala universitet,Molekylärbiologi
Puglisi, Joseph D. (author)
Stanford Univ, Dept Struct Biol, Sch Med, Stanford, CA 94305 USA
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Stanford Univ, Dept Struct Biol, Sch Med, Stanford, CA 94305 USA;Stanford Univ, Program Biophys, Stanford, CA USA.;Pacific Biosci Inc, Menlo Pk, CA 94025 USA Molekylärbiologi (creator_code:org_t)
Oxford University Press, 2023
2023
English.
In: Nucleic Acids Research. - : Oxford University Press. - 0305-1048 .- 1362-4962. ; 51:11, s. 5774-5790
  • Journal article (peer-reviewed)
Abstract Subject headings
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  • In bacteria, release of newly synthesized proteins from ribosomes during translation termination is catalyzed by class-I release factors (RFs) RF1 or RF2, reading UAA and UAG or UAA and UGA codons, respectively. Class-I RFs are recycled from the post-termination ribosome by a class-II RF, the GTPase RF3, which accelerates ribosome intersubunit rotation and class-I RF dissociation. How conformational states of the ribosome are coupled to the binding and dissociation of the RFs remains unclear and the importance of ribosome-catalyzed guanine nucleotide exchange on RF3 for RF3 recycling in vivo has been disputed. Here, we profile these molecular events using a single-molecule fluorescence assay to clarify the timings of RF3 binding and ribosome intersubunit rotation that trigger class-I RF dissociation, GTP hydrolysis, and RF3 dissociation. These findings in conjunction with quantitative modeling of intracellular termination flows reveal rapid ribosome-dependent guanine nucleotide exchange to be crucial for RF3 action in vivo.

Subject headings

NATURVETENSKAP  -- Biologi -- Biokemi och molekylärbiologi (hsv//swe)
NATURAL SCIENCES  -- Biological Sciences -- Biochemistry and Molecular Biology (hsv//eng)

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