SwePub
Sök i LIBRIS databas

  Extended search

onr:"swepub:oai:DiVA.org:uu-512759"
 

Search: onr:"swepub:oai:DiVA.org:uu-512759" > An annotated chromo...

  • 1 of 1
  • Previous record
  • Next record
  •    To hitlist

An annotated chromosome-scale reference genome for Eastern black-eared wheatear (Oenanthe melanoleuca)

Peona, Valentina (author)
Uppsala universitet,Systematisk biologi,Science for Life Laboratory, SciLifeLab
Palacios Gimenez, Octavio Manuel (author)
Uppsala universitet,Systematisk biologi,Science for Life Laboratory, SciLifeLab,Department of Population Ecology, Institute of Ecology and Evolution, Friedrich Schiller University Jena, 07743 Jena, Germany.;German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, 04103 Leipzig, Germany.
Lutgen, Dave (author)
show more...
Olsen, Remi André (author)
Stockholms universitet,Institutionen för biokemi och biofysik,Science for Life Laboratory (SciLifeLab)
Kakhki, Niloofar Alaei (author)
Andriopoulos, Pavlos (author)
Bontzorlos, Vasileios (author)
Schweizer, Manuel (author)
Suh, Alexander (author)
Uppsala universitet,Science for Life Laboratory, SciLifeLab,Systematisk biologi,School of Biological Sciences, University of East Anglia, NR4 7TU Norwich, UK.
Burri, Reto (author)
show less...
 (creator_code:org_t)
Oxford University Press, 2023
2023
English.
In: G3. - : Oxford University Press. - 2160-1836. ; 13:6
  • Journal article (peer-reviewed)
Abstract Subject headings
Close  
  • Pervasive convergent evolution and in part high incidences of hybridization distinguish wheatears (songbirds of the genus Oenanthe) as a versatile system to address questions at the forefront of research on the molecular bases of phenotypic and species diversification. To prepare the genomic resources for this venture, we here generated and annotated a chromosome-scale assembly of the Eastern black-eared wheatear (Oenanthe melanoleuca). This species is part of the Oenanthe hispanica complex that is characterized by convergent evolution of plumage coloration and high rates of hybridization. The long-read-based male nuclear genome assembly comprises 1.04 Gb in 32 autosomes, the Z chromosome, and the mitogenome. The assembly is highly contiguous (contig N50, 12.6 Mb; scaffold N50, 70 Mb), with 96% of the genome assembled at the chromosome level and 95.5% benchmarking universal single-copy orthologs (BUSCO) completeness. The nuclear genome was annotated with 18,143 protein-coding genes and 31,333 mRNAs (annotation BUSCO completeness, 98.0%), and about 10% of the genome consists of repetitive DNA. The annotated chromosome-scale reference genome of Eastern black-eared wheatear provides a crucial resource for research into the genomics of adaptation and speciation in an intriguing group of passerines.

Subject headings

NATURVETENSKAP  -- Biologi -- Evolutionsbiologi (hsv//swe)
NATURAL SCIENCES  -- Biological Sciences -- Evolutionary Biology (hsv//eng)
NATURVETENSKAP  -- Biologi -- Genetik (hsv//swe)
NATURAL SCIENCES  -- Biological Sciences -- Genetics (hsv//eng)

Keyword

birds
open-habitat chats
Oenanthe melanoleuca
Oenanthe hispanica complex
transcriptome
repeat content
transposable elements

Publication and Content Type

ref (subject category)
art (subject category)

Find in a library

  • G3 (Search for host publication in LIBRIS)

To the university's database

  • 1 of 1
  • Previous record
  • Next record
  •    To hitlist

Kungliga biblioteket hanterar dina personuppgifter i enlighet med EU:s dataskyddsförordning (2018), GDPR. Läs mer om hur det funkar här.
Så här hanterar KB dina uppgifter vid användning av denna tjänst.

 
pil uppåt Close

Copy and save the link in order to return to this view