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Ghost admixture in ...
Ghost admixture in eastern gorillas
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- Pawar, Harvinder (author)
- Inst Evolutionary Biol UPF CSIC, PRBB, Barcelona, Spain.
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- Rymbekova, Aigerim (author)
- Univ Vienna, Dept Evolutionary Anthropol, Vienna, Austria.;Univ Vienna, Human Evolut & Archaeol Sci HEAS, Vienna, Austria.
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- Cuadros-Espinoza, Sebastian (author)
- Inst Evolutionary Biol UPF CSIC, PRBB, Barcelona, Spain.
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- Huang, Xin (author)
- Univ Vienna, Dept Evolutionary Anthropol, Vienna, Austria.;Univ Vienna, Human Evolut & Archaeol Sci HEAS, Vienna, Austria.
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- de Manuel, Marc (author)
- Inst Evolutionary Biol UPF CSIC, PRBB, Barcelona, Spain.
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- van der Valk, Tom (author)
- Naturhistoriska riksmuseet,Enheten för bioinformatik och genetik,Swedish Museum Nat Hist, Dept Bioinformat & Genet, Scilifelab, Stockholm, Sweden.;Ctr Palaeogenet, Stockholm, Sweden.
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- Lobon, Irene (author)
- Inst Evolutionary Biol UPF CSIC, PRBB, Barcelona, Spain.
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- Alvarez-Estape, Marina (author)
- Inst Evolutionary Biol UPF CSIC, PRBB, Barcelona, Spain.
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- Haber, Marc (author)
- Univ Birmingham, Inst Canc & Genom Sci, Dubai, U Arab Emirates.
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- Dolgova, Olga (author)
- CIC bioGUNE Ctr Invest Cooperat Biociencias, Integrat Genom Lab, Parque Cient Tecnol Bizkaia Bldg 801A, Derio, Spain.
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- Han, Sojung (author)
- Inst Evolutionary Biol UPF CSIC, PRBB, Barcelona, Spain.;Univ Vienna, Dept Evolutionary Anthropol, Vienna, Austria.;Univ Vienna, Human Evolut & Archaeol Sci HEAS, Vienna, Austria.
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- Esteller-Cucala, Paula (author)
- Inst Evolutionary Biol UPF CSIC, PRBB, Barcelona, Spain.
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- Juan, David (author)
- Inst Evolutionary Biol UPF CSIC, PRBB, Barcelona, Spain.
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- Ayub, Qasim (author)
- Wellcome Sanger Inst, Hinxton, England.;Monash Univ Malaysia, Genom Facil, Sch Sci, Batang Berjuntai, Selangor Darul, Malaysia.
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- Bautista, Ruben (author)
- Wellcome Sanger Inst, Hinxton, England.
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- Kelley, Joanna L. (author)
- Univ Calif Santa Cruz, Dept Ecol & Evolutionary Biol, Santa Cruz, CA USA.
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- Cornejo, Omar. E. (author)
- Univ Calif Santa Cruz, Dept Ecol & Evolutionary Biol, Santa Cruz, CA USA.
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- Lao, Oscar (author)
- Inst Evolutionary Biol UPF CSIC, PRBB, Barcelona, Spain.
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- Andres, Aida. M. (author)
- UCL, UCL Genet Inst, Dept Genet Evolut & Environm, London, England.
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- Guschanski, Katerina, Dr. 1978- (author)
- Uppsala universitet,Zooekologi,Science for Life Laboratory, SciLifeLab,Univ Edinburgh, Inst Ecol & Evolut, Sch Biol Sci, Edinburgh, Scotland
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- Ssebide, Benard (author)
- Gorilla Doctors, Kampala, Uganda.
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- Cranfield, Mike (author)
- Univ Calif Davis, One Hlth Inst, Karen C Drayer Wildlife Hlth Ctr, Sch Vet Med, Davis, CA USA.
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- Tyler-Smith, Chris (author)
- Wellcome Sanger Inst, Hinxton, England.
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- Xue, Yali (author)
- Wellcome Sanger Inst, Hinxton, England.
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- Prado-Martinez, Javier (author)
- Inst Evolutionary Biol UPF CSIC, PRBB, Barcelona, Spain.;Wellcome Sanger Inst, Hinxton, England.
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- Marques-Bonet, Tomas (author)
- Inst Evolutionary Biol UPF CSIC, PRBB, Barcelona, Spain.;Catalan Inst Res & Adv Studies ICREA, Passeig Lluis Co, Barcelona, Spain.;Barcelona Inst Sci & Technol BIST, Ctr Genom Regulat CRG, CNAG CRG, Barcelona, Spain.;Univ Autonoma Barcelona, Inst Catala Paleontol Miquel Crusafont, Edif ICTA ICP, Barcelona, Spain.
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- Kuhlwilm, Martin (author)
- Inst Evolutionary Biol UPF CSIC, PRBB, Barcelona, Spain.;Univ Vienna, Dept Evolutionary Anthropol, Vienna, Austria.;Univ Vienna, Human Evolut & Archaeol Sci HEAS, Vienna, Austria.
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Inst Evolutionary Biol UPF CSIC, PRBB, Barcelona, Spain Univ Vienna, Dept Evolutionary Anthropol, Vienna, Austria.;Univ Vienna, Human Evolut & Archaeol Sci HEAS, Vienna, Austria. (creator_code:org_t)
- Springer Nature, 2023
- 2023
- English.
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In: Nature Ecology & Evolution. - : Springer Nature. - 2397-334X. ; 7:9, s. 1503-1514
- Related links:
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https://doi.org/10.1...
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https://uu.diva-port... (primary) (Raw object)
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Abstract
Subject headings
Close
- Archaic admixture has had a significant impact on human evolution with multiple events across different clades, including from extinct hominins such as Neanderthals and Denisovans into modern humans. Within the great apes archaic admixture has been identified in chimpanzees and bonobos, but the possibility of such events has not been explored in other species. Here, we address this question using high-coverage whole genome sequences from all four extant gorilla subspecies, including six newly sequenced eastern gorillas from previously unsampled geographic regions. Using Approximate Bayesian Computation (ABC) with neural networks to model the demographic history of gorillas, we find a signature of admixture from an archaic 'ghost' lineage into the common ancestor of eastern gorillas, but not western gorillas. We infer that up to 3% of the genome of these individuals is introgressed from an archaic lineage that diverged more than 3 million years ago from the common ancestor of all extant gorillas. This introgression event took place before the split of mountain and eastern lowland gorillas, likely more than 40 thousand years ago, and may have influenced perception of bitter taste in eastern gorillas. When comparing the introgression landscapes of gorillas, humans and bonobos, we find a consistent depletion of introgressed fragments on the X chromosome across these species. However, depletion in protein-coding content is not detectable in eastern gorillas, possibly as a consequence of stronger genetic drift in this species.
Subject headings
- NATURVETENSKAP -- Biologi -- Evolutionsbiologi (hsv//swe)
- NATURAL SCIENCES -- Biological Sciences -- Evolutionary Biology (hsv//eng)
- NATURVETENSKAP -- Biologi -- Genetik (hsv//swe)
- NATURAL SCIENCES -- Biological Sciences -- Genetics (hsv//eng)
Publication and Content Type
- ref (subject category)
- art (subject category)
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- By the author/editor
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Pawar, Harvinder
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Rymbekova, Aiger ...
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Cuadros-Espinoza ...
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Huang, Xin
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de Manuel, Marc
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van der Valk, To ...
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show more...
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Lobon, Irene
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Alvarez-Estape, ...
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Haber, Marc
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Dolgova, Olga
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Han, Sojung
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Esteller-Cucala, ...
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Juan, David
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Ayub, Qasim
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Bautista, Ruben
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Kelley, Joanna L ...
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Cornejo, Omar. E ...
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Lao, Oscar
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Andres, Aida. M.
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Guschanski, Kate ...
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Ssebide, Benard
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Cranfield, Mike
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Tyler-Smith, Chr ...
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Xue, Yali
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Prado-Martinez, ...
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Marques-Bonet, T ...
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Kuhlwilm, Martin
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- About the subject
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- NATURAL SCIENCES
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NATURAL SCIENCES
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and Biological Scien ...
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and Evolutionary Bio ...
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- NATURAL SCIENCES
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NATURAL SCIENCES
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and Biological Scien ...
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and Genetics
- Articles in the publication
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Nature Ecology & ...
- By the university
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Uppsala University
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Swedish Museum of Natural History