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Explicit formulation of different receptor-G-protein interactions and effector regulation.

Kukkonen, Jyrki (author)
Uppsala universitet,Institutionen för neurovetenskap,Fysiologi,Kukkonen
 (creator_code:org_t)
2004
2004
English.
In: Bioinformatics. - 1367-4803 .- 1367-4811. ; 20:15, s. 2411-20
  • Journal article (peer-reviewed)
Abstract Subject headings
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  • MOTIVATION: G-protein-coupled receptors (GPCRs) can create different intracellular signals depending on which G-proteins they couple to and which intracellular signal-integrators, such as adenylyl cyclases, are expressed in the cell. One and the same GPCR can activate multiple G-protein species, generating signals, which either inhibit or amplify each other. Because of this complexity, extraction of mechanistic information from concentration-response curves is not straightforward. RESULTS: To tackle this problem, I describe in this paper explicit equations for GPCR-interaction with two G-protein species by different possible mechanisms, and also an equation for the regulation of an effector enzyme by the activated G-proteins or their effectors. Arithmetic solutions to these equations are presented, which resulted in the equations being applicable in a spreadsheet program environment. These equations are useful in simulations to analyze results, to design experiments and to test hypotheses. Some examples of this are presented in this study.

Keyword

Adaptation; Physiological/physiology
Binding Sites
Comparative Study
Computer Simulation
GTP-Binding Proteins/*chemistry/*metabolism
Models; Biological
Models; Chemical
Protein Binding
Protein Interaction Mapping/*methods
Receptors; G-Protein-Coupled/*chemistry/*metabolism
Research Support; Non-U.S. Gov't
Signal Transduction/physiology

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ref (subject category)
art (subject category)

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Bioinformatics
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