Annotating public fungal ITS sequences from the built environment according to the MIxS-Built Environment standard – a report from a May 23-24, 2016 workshop (Gothenburg, Sweden)

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Abarenkov, KessyTartu Ülikool,University of Tartu,Univ Tartu, Nat Hist Museum, Tartu, Estonia. (author)

Annotating public fungal ITS sequences from the built environment according to the MIxS-Built Environment standard – a report from a May 23-24, 2016 workshop (Gothenburg, Sweden)

Article/chapterEnglish2016

Publisher, publication year, extent ...

2016-09-26
Pensoft Publishers,2016
electronicrdacarrier

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LIBRIS-ID:oai:gup.ub.gu.se/242385
https://gup.ub.gu.se/publication/242385URI
https://doi.org/10.3897/mycokeys.16.10000DOI
https://research.chalmers.se/publication/242385URI
https://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-308963URI
https://urn.kb.se/resolve?urn=urn:nbn:se:hb:diva-24089URI

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Language:English

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SwePubSwePub

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Subject category:ref swepub-contenttype
Subject category:art swepub-publicationtype

Notes

Recent molecular studies have identified substantial fungal diversity in indoor environments. Fungi and fungal particles have been linked to a range of potentially unwanted effects in the built environment, including asthma, decay of building materials, and food spoilage. The study of the built mycobiome is hampered by a number of constraints, one of which is the poor state of the metadata annotation of fungal DNA sequences from the built environment in public databases. In order to enable precise interrogation of such data – for example, “retrieve all fungal sequences recovered from bathrooms” – a workshop was organized at the University of Gothenburg (May 23-24, 2016) to annotate public fungal barcode (ITS) sequences according to the MIxS-Built Environment annotation standard (http://gensc.org/mixs/). The 36 participants assembled a total of 45,488 data points from the published literature, including the addition of 8,430 instances of countries of collection from a total of 83 countries, 5,801 instances of building types, and 3,876 instances of surface-air contaminants. The results were implemented in the UNITE database for molecular identification of fungi (http://unite.ut.ee) and were shared with other online resources. Data obtained from human/animal pathogenic fungi will furthermore be verified on culture based metadata for subsequent inclusion in the ISHAM-ITS database (http://its.mycologylab.org).

Subject headings and genre

NATURVETENSKAP Biologi Biologisk systematik hsv//swe
NATURAL SCIENCES Biological Sciences Biological Systematics hsv//eng
NATURVETENSKAP Biologi Bioinformatik och systembiologi hsv//swe
NATURAL SCIENCES Biological Sciences Bioinformatics and Systems Biology hsv//eng
NATURVETENSKAP Data- och informationsvetenskap Bioinformatik hsv//swe
NATURAL SCIENCES Computer and Information Sciences Bioinformatics hsv//eng
NATURVETENSKAP Biologi Ekologi hsv//swe
NATURAL SCIENCES Biological Sciences Ecology hsv//eng
NATURVETENSKAP Data- och informationsvetenskap Systemvetenskap, informationssystem och informatik hsv//swe
NATURAL SCIENCES Computer and Information Sciences Information Systems hsv//eng
TEKNIK OCH TEKNOLOGIER Samhällsbyggnadsteknik Byggproduktion hsv//swe
ENGINEERING AND TECHNOLOGY Civil Engineering Construction Management hsv//eng
NATURVETENSKAP Biologi Evolutionsbiologi hsv//swe
NATURAL SCIENCES Biological Sciences Evolutionary Biology hsv//eng
MEDICIN OCH HÄLSOVETENSKAP Hälsovetenskap Arbetsmedicin och miljömedicin hsv//swe
MEDICAL AND HEALTH SCIENCES Health Sciences Occupational Health and Environmental Health hsv//eng
NATURVETENSKAP Biologi Botanik hsv//swe
NATURAL SCIENCES Biological Sciences Botany hsv//eng
NATURVETENSKAP Biologi Mikrobiologi hsv//swe
NATURAL SCIENCES Biological Sciences Microbiology hsv//eng
NATURVETENSKAP Biologi Immunologi hsv//swe
NATURAL SCIENCES Biological Sciences Immunology hsv//eng
NATURVETENSKAP Data- och informationsvetenskap Datavetenskap hsv//swe
NATURAL SCIENCES Computer and Information Sciences Computer Sciences hsv//eng
MEDICIN OCH HÄLSOVETENSKAP Medicinska och farmaceutiska grundvetenskaper Mikrobiologi inom det medicinska området hsv//swe
MEDICAL AND HEALTH SCIENCES Basic Medicine Microbiology in the medical area hsv//eng
NATURVETENSKAP Biologi hsv//swe
NATURAL SCIENCES Biological Sciences hsv//eng
Built environment
Indoor fungi
ITS
Annotation
Mycobiome
ITS

Added entries (persons, corporate bodies, meetings, titles ...)

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Laszlo, IrinyiWestmead Institute for Medical Research,The University of Sydney,Westmead Hospital,Westmead Hosp, Ctr Infect Dis & Microbiol, Mol Mycol Res Lab, Sydney Med Sch, Sydney, NSW, Australia.;Univ Sydney, Marie Bashir Inst Infect Dis & Biosecur, Sydney, NSW, Australia.;Westmead Inst Med Res, Westmead, NSW, Australia. (author)
Agan, AhtoEstonian Institute of Ecology,Univ Tartu, Inst Ecol & Earth Sci, Tartu, Estonia. (author)
Ambrosio, EliaEstonian Institute of Ecology,Tartu Ülikool,University of Tartu,Univ Tartu, Nat Hist Museum, Tartu, Estonia.;Univ Tartu, Inst Ecol & Earth Sci, Tartu, Estonia.;Via Calamandrei 2, I-53035 Siena, Italy. (author)
Antonelli, Alexandre,1978Gothenburg University,Göteborgs universitet,Institutionen för biologi och miljövetenskap,Department of Biological and Environmental Sciences,University of Gothenburg,Univ Gothenburg, Dept Biol & Environm Sci, Box 461, S-40530 Gothenburg, Sweden.;Gothenburg Bot Garden, Carl Skottsbergs Gata 22A, S-41319 Gothenburg, Sweden.(Swepub:gu)xantal (author)
Bahram, MohammadUppsala universitet,Systematisk biologi,Univ Tartu, Inst Ecol & Earth Sci, Tartu, Estonia(Swepub:uu)mohba915 (author)
Bengtsson-Palme, Johan,1985Gothenburg University,Göteborgs universitet,Institutionen för kemi och molekylärbiologi,Department of Chemistry and Molecular Biology,University of Gothenburg,Univ Gothenburg, Sahlgrenska Acad, Dept Infect Dis, Guldhedsgatan 10, S-41346 Gothenburg, Sweden.(Swepub:gu)xbengg (author)
Bok, Gunilla,1961SP Sveriges Tekniska Forskningsinstitut AB,SP Tech Res Inst Sweden, Box 857, S-50115 Boras, Sweden.(Swepub:gu)xbokgm (author)
Cangren, PatrikGothenburg University,Göteborgs universitet,Institutionen för biologi och miljövetenskap,Department of Biological and Environmental Sciences,University of Gothenburg,Univ Gothenburg, Dept Biol & Environm Sci, Box 461, S-40530 Gothenburg, Sweden.(Swepub:gu)xcanpa (author)
Ryberg, Martin,1976Uppsala universitet,Gothenburg University,Göteborgs universitet,Institutionen för biologi och miljövetenskap,Department of Biological and Environmental Sciences,University of Gothenburg,Systematisk biologi(Swepub:uu)marry118 (author)
Coleine, ClaudiaUniversita degli Studi della Tuscia,Tuscia University,Univ Tuscia, Dept Ecol & Biol Sci, I-01100 Viterbo, Italy. (author)
Gustafsson, Claes G. R.,1965Gothenburg University,Göteborgs universitet,Institutionen för biologi och miljövetenskap,Department of Biological and Environmental Sciences,University of Gothenburg,Univ Gothenburg, Herbarium GB, Box 461, S-40530 Gothenburg, Sweden.(Swepub:gu)xguscl (author)
He, JinhongChinese Academy of Sciences,Chinese Acad Sci, South China Bot Garden, 723 Xingke Rd, Guangzhou 510650, Guangdong, Peoples R China. (author)
Hofmann, TobiasGothenburg University,Göteborgs universitet,Institutionen för biologi och miljövetenskap,Department of Biological and Environmental Sciences,University of Gothenburg,Univ Gothenburg, Dept Biol & Environm Sci, Box 461, S-40530 Gothenburg, Sweden.(Swepub:gu)xhofmt (author)
Kristiansson, Erik,1978Gothenburg University,Göteborgs universitet,Institutionen för matematiska vetenskaper,Department of Mathematical Sciences,University of Gothenburg,Chalmers tekniska högskola,Chalmers University of Technology,Chalmers, Dept Math Sci, S-41296 Gothenburg, Sweden.(Swepub:cth)erikkr (author)
Larsson, Ellen,1961Gothenburg University,Göteborgs universitet,Institutionen för biologi och miljövetenskap,Department of Biological and Environmental Sciences,University of Gothenburg,Univ Gothenburg, Dept Biol & Environm Sci, Box 461, S-40530 Gothenburg, Sweden.(Swepub:gu)xlaell (author)
Larsson, TomasGothenburg University,Göteborgs universitet,Institutionen för marina vetenskaper,Department of marine sciences,University of Gothenburg,Univ Gothenburg, Dept Marine Sci, Box 460, S-40530 Gothenburg, Sweden. (author)
Liu, YingkuiGothenburg University,Göteborgs universitet,Institutionen för biologi och miljövetenskap,Department of Biological and Environmental Sciences,University of Gothenburg,Univ Gothenburg, Dept Biol & Environm Sci, Box 461, S-40530 Gothenburg, Sweden.(Swepub:gu)xluiyi (author)
Martinsson, Svante,1985Gothenburg University,Göteborgs universitet,Institutionen för biologi och miljövetenskap,Department of Biological and Environmental Sciences,University of Gothenburg,Univ Gothenburg, Dept Biol & Environm Sci, Box 461, S-40530 Gothenburg, Sweden.(Swepub:gu)xmarts (author)
Meyer, WielandWestmead Institute for Medical Research,Westmead Hospital,The University of Sydney,Westmead Hosp, Ctr Infect Dis & Microbiol, Mol Mycol Res Lab, Sydney Med Sch, Sydney, NSW, Australia.;Westmead Inst Med Res, Westmead, NSW, Australia. (author)
Panova, Marina,1973Gothenburg University,Göteborgs universitet,Institutionen för marina vetenskaper,Department of marine sciences,University of Gothenburg,Univ Gothenburg, Dept Marine Sci Tjarno, S-45296 Stromstad, Sweden.(Swepub:gu)xpanma (author)
Pombubpa, NuttaponUniversity of California,Univ Calif Riverside, Dept Plant Pathol & Microbiol, Riverside, CA 92521 USA.;Univ Calif Riverside, Inst Integrat Genome Biol, Riverside, CA 92521 USA. (author)
Ritter, CamilaGothenburg University,Göteborgs universitet,Institutionen för biologi och miljövetenskap,Department of Biological and Environmental Sciences,University of Gothenburg,Univ Gothenburg, Dept Biol & Environm Sci, Box 461, S-40530 Gothenburg, Sweden.(Swepub:gu)xritca (author)
Ryberg, Martin,1976 (author)
Svantesson, StenGothenburg University,Göteborgs universitet,Institutionen för biologi och miljövetenskap,Department of Biological and Environmental Sciences,University of Gothenburg,University of Aberdeen,The James Hutton Institute,Univ Gothenburg, Dept Biol & Environm Sci, Box 461, S-40530 Gothenburg, Sweden.,James Hutton Inst, Aberdeen AB15 8QH, Scotland.;Univ Aberdeen, Inst Biol & Environm Sci, Cruickshank Bldg, Aberdeen AB24 3UU, Scotland.(Swepub:gu)xsvste (author)
Scharn, RuudGothenburg University,Göteborgs universitet,Institutionen för geovetenskaper,Department of Earth Sciences,University of Gothenburg,Univ Gothenburg, Dept Earth Sci, Box 460, S-40530 Gothenburg, Sweden.(Swepub:gu)xschru (author)
Svensson, Ola,1971Gothenburg University,Göteborgs universitet,Institutionen för biologi och miljövetenskap,Linnécentrum för marin evolutionsbiologi (CEMEB),Department of Biological and Environmental Sciences,Linnaeus Centre for Marine Evolutionary Biology (CEMEB),University of Gothenburg,Univ Gothenburg, Dept Biol & Environm Sci, Box 461, S-40530 Gothenburg, Sweden.(Swepub:hb)olsv (author)
Töpel, Mats H.,1973Gothenburg University,Göteborgs universitet,Institutionen för marina vetenskaper,Department of marine sciences,University of Gothenburg,Univ Gothenburg, Dept Marine Sci, Box 460, S-40530 Gothenburg, Sweden.(Swepub:gu)xamatl (author)
Unterseher, MartinUniversität Greifswald,University of Greifswald,Ernst Moritz Arndt Univ Greifswald, Inst Bot & Landscape Ecol, Soldmannstr 15, D-17487 Greifswald, Germany. (author)
Visagie, CobusUniversity of Ottawa,Agr & Agri Food Canada, Biodivers Mycol, 960 Carling Ave, Ottawa, ON K1A 0C6, Canada.;Univ Ottawa, Dept Biol, 30 Marie Curie, Ottawa, ON K1N 6N5, Canada. (author)
Wurzbacher, Christian,1980Gothenburg University,Göteborgs universitet,Institutionen för biologi och miljövetenskap,Department of Biological and Environmental Sciences,University of Gothenburg,Univ Gothenburg, Dept Biol & Environm Sci, Box 461, S-40530 Gothenburg, Sweden.(Swepub:gu)xwurch (author)
Taylor, Andy F.S. (author)
Kõljalg, UrmasTartu Ülikool,University of Tartu,Estonian Institute of Ecology,Univ Tartu, Nat Hist Museum, Tartu, Estonia.;Univ Tartu, Inst Ecol & Earth Sci, Tartu, Estonia. (author)
Schriml, LynnUniversity of Maryland,Univ Maryland, Sch Med, Dept Epidemiol & Publ Hlth, Baltimore, MD 21201 USA.;Univ Maryland, Sch Med, Inst Genome Sci, Baltimore, MD 21201 USA. (author)
Nilsson, R. Henrik,1976Gothenburg University,Göteborgs universitet,Institutionen för biologi och miljövetenskap,Department of Biological and Environmental Sciences,University of Gothenburg,Univ Gothenburg, Dept Biol & Environm Sci, Box 461, S-40530 Gothenburg, Sweden.(Swepub:gu)xnihen (author)
Coimbra, VictorUniv Fed Pernambuco UFPE, Dept Micol, CCB, Av Prof Nelson Chaves S-N, BR-50670901 Recife, PE, Brazil. (author)
Tartu ÜlikoolUniv Tartu, Nat Hist Museum, Tartu, Estonia. (creator_code:org_t)

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