Search: onr:"swepub:oai:gup.ub.gu.se/282836" >
Towards a standardi...
Towards a standardized bioinformatics infrastructure for N- and O-glycomics
-
- Rojas-Macias, Miguel A., 1979 (author)
- University of Gothenburg,Gothenburg University,Göteborgs universitet,Institutionen för biomedicin, avdelningen för medicinsk kemi och cellbiologi,Institute of Biomedicine, Department of Medical Biochemistry and Cell Biology
-
- Mariethoz, J. (author)
- University of Geneva
-
- Andersson, Peter (author)
- University of Gothenburg,Gothenburg University,Göteborgs universitet,Institutionen för biomedicin, avdelningen för medicinsk kemi och cellbiologi,Institute of Biomedicine, Department of Medical Biochemistry and Cell Biology
-
show more...
-
- Jin, Chunsheng (author)
- University of Gothenburg,Gothenburg University,Göteborgs universitet,Institutionen för biomedicin, avdelningen för medicinsk kemi och cellbiologi,Institute of Biomedicine, Department of Medical Biochemistry and Cell Biology
-
- Venkatakrishnan, Vignesh, 1987 (author)
- University of Gothenburg,Gothenburg University,Göteborgs universitet,Institutionen för biomedicin, avdelningen för medicinsk kemi och cellbiologi,Institute of Biomedicine, Department of Medical Biochemistry and Cell Biology
-
- Aoki, N. P. (author)
- SparqLite LLC.
-
- Shinmachi, D. (author)
- SparqLite LLC.
-
- Ashwood, C. (author)
- Medical College of Wisconsin
-
- Madunic, K. (author)
- Leiden University
-
- Zhang, T. (author)
- Leiden University
-
- Miller, R. L. (author)
- University of Copenhagen
-
- Horlacher, O. (author)
- Swiss Institute for Bioinformatics (SIB)
-
- Struwe, W. B. (author)
- University of Oxford
-
- Watanabe, Y. (author)
- Niigata University
-
- Okuda, S. (author)
- Niigata University
-
- Levander, Fredrik (author)
- Lund University,Lunds universitet,Institutionen för immunteknologi,Institutioner vid LTH,Lunds Tekniska Högskola,Department of Immunotechnology,Departments at LTH,Faculty of Engineering, LTH,National Bioinformatics Infrastructure Sweden (NBIS), SciLifeLab
-
- Kolarich, D. (author)
- ARC Centre of Excellence for Nanoscale BioPhotonics
-
- Rudd, P. M. (author)
- A*Star, Bioprocessing Technology Institute (BTI)
-
- Wuhrer, M. (author)
- Leiden University
-
- Kettner, C. (author)
- Beilstein Institute for the Advancement of Chemical Sciences
-
- Packer, N. H. (author)
- ARC Centre of Excellence for Nanoscale BioPhotonics
-
- Aoki-Kinoshita, K. F. (author)
- Soka University
-
- Lisacek, F. (author)
- University of Geneva
-
- Karlsson, N. G. (author)
- University of Gothenburg
-
show less...
-
(creator_code:org_t)
- 2019-07-22
- 2019
- English.
-
In: Nature Communications. - : Springer Science and Business Media LLC. - 2041-1723. ; 10
- Related links:
-
https://www.nature.c...
-
show more...
-
http://dx.doi.org/10... (free)
-
https://gup.ub.gu.se...
-
https://doi.org/10.1...
-
https://lup.lub.lu.s...
-
show less...
Abstract
Subject headings
Close
- The mass spectrometry (MS)-based analysis of free polysaccharides and glycans released from proteins, lipids and proteoglycans increasingly relies on databases and software. Here, we review progress in the bioinformatics analysis of protein-released N- and O-linked glycans (N-and O-glycomics) and propose an e-infrastructure to overcome current deficits in data and experimental transparency. This workflow enables the standardized submission of MS-based glycomics information into the public repository UniCarb-DR. It implements the MIRAGE (Minimum Requirement for A Glycomics Experiment) reporting guidelines, storage of unprocessed MS data in the GlycoPOST repository and glycan structure registration using the GlyTouCan registry, thereby supporting the development and extension of a glycan structure knowledgebase.
Subject headings
- NATURVETENSKAP -- Biologi -- Biokemi och molekylärbiologi (hsv//swe)
- NATURAL SCIENCES -- Biological Sciences -- Biochemistry and Molecular Biology (hsv//eng)
- MEDICIN OCH HÄLSOVETENSKAP -- Medicinsk bioteknologi -- Biomedicinsk laboratorievetenskap/teknologi (hsv//swe)
- MEDICAL AND HEALTH SCIENCES -- Medical Biotechnology -- Biomedical Laboratory Science/Technology (hsv//eng)
Keyword
- mass-spectrometry
- minimum information
- quantitative glycomics
- unicarb-db
- proteomics
- database
- glycosylation
- glycans
- disease
- platform
- Science & Technology - Other Topics
Publication and Content Type
- ref (subject category)
- art (subject category)
Find in a library
To the university's database
- By the author/editor
-
Rojas-Macias, Mi ...
-
Mariethoz, J.
-
Andersson, Peter
-
Jin, Chunsheng
-
Venkatakrishnan, ...
-
Aoki, N. P.
-
show more...
-
Shinmachi, D.
-
Ashwood, C.
-
Madunic, K.
-
Zhang, T.
-
Miller, R. L.
-
Horlacher, O.
-
Struwe, W. B.
-
Watanabe, Y.
-
Okuda, S.
-
Levander, Fredri ...
-
Kolarich, D.
-
Rudd, P. M.
-
Wuhrer, M.
-
Kettner, C.
-
Packer, N. H.
-
Aoki-Kinoshita, ...
-
Lisacek, F.
-
Karlsson, N. G.
-
show less...
- About the subject
-
- NATURAL SCIENCES
-
NATURAL SCIENCES
-
and Biological Scien ...
-
and Biochemistry and ...
-
- MEDICAL AND HEALTH SCIENCES
-
MEDICAL AND HEAL ...
-
and Medical Biotechn ...
-
and Biomedical Labor ...
- Articles in the publication
-
Nature Communica ...
- By the university
-
University of Gothenburg
-
Lund University